>VPA_BPP2 (Q06419) Replication gene A protein (GpA)|
          Length = 761

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
 Frame = -1

Query: 427 HHGVWHWHFRLLCHLRHNR-----MREFRLRELGHSR--VRRQFVLWHLGHHG 290
           H G  HWH  L C+ R        MR + L+E G  R   R +F   HL   G
Sbjct: 394 HDGTPHWHMMLFCNPRQRNQIIEIMRRYALKEDGDERGAARNRFQAKHLNQGG 446

>KR413_HUMAN (Q9BYU7) Keratin-associated protein 4-13 (Keratin-associated|
           protein 4.13) (Ultrahigh sulfur keratin-associated
           protein 4.13)
          Length = 106

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +3

Query: 264 TLSSPKCHTPWCPR---CQSTNCRRTLLCPSSRSLNSRIRLCLRWQRSLKCQCHTPWCR 431
           T   P C  P C R   CQS  C+ T  CPS       +  C R Q     +C T  CR
Sbjct: 34  TCCRPSCCRPSCCRPQCCQSVCCQPTCCCPS-----YCVSSCCRPQCCQTTRCRTTCCR 87

>KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-associated protein|
           4.4) (Ultrahigh sulfur keratin-associated protein 4.4)
          Length = 166

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = +3

Query: 264 TLSSPKCHTPWCPRCQSTNCRRTLLCPSSRSLNSRIRLCLRWQRSLKCQCHTPWCR 431
           T   P C  P C  CQS  C+ T  CPS       +  C R Q      C T  CR
Sbjct: 99  TCCRPSCCRPQC--CQSVCCQPTCCCPS-----YCVSSCCRPQCCQTTCCRTTCCR 147



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +3

Query: 264 TLSSPKCHTPWC--PRCQSTNCRRTLLCPSSRSLNSRIRLCLRWQ--RSLKCQ--CHTPW 425
           T   P C    C  P+C  T C RT  C  S  ++S    C R Q  +S+ CQ  C  P 
Sbjct: 34  TCCRPSCCVSSCCRPQCCQTTCCRTTCCHPSCCVSS----CCRPQCCQSVCCQPTCCRPQ 89

Query: 426 CRRCQ 440
           C  CQ
Sbjct: 90  C--CQ 92

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
            [Contains: Nuclear pore complex protein Nup98
            (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
            complex protein Nup96 (Nucleoporin Nup96) (96 kDa
            nucleoporin)]
          Length = 1729

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 451  AARAWHLRHHGVWHWHFRLLCHLRHNRMREFRLREL 344
            A+ A  L   G+W W   +L H+ ++ +RE  +REL
Sbjct: 1550 ASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVREL 1585

>KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-associated|
           protein 4.15) (Ultrahigh sulfur keratin-associated
           protein 4.15) (Fragment)
          Length = 193

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 282 CHTPWCPRCQSTNCRRTLLCPSSRSLNSRIRLCLRWQ--RSLKCQ--CHTPWC 428
           C    CP C  T C RT  C  S  ++S    C R Q  +S+ CQ  C  P C
Sbjct: 49  CRPSCCPSCCQTTCCRTTCCRPSCCVSS----CCRPQCCQSVCCQPTCCRPSC 97

>HSPC_ELECI (P83183) Cysteine-rich protamine|
          Length = 84

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = +3

Query: 270 SSPKCHTPWCPRCQSTNCRRTLLC--PSSRSLNS---RIRLCLRWQRSLKCQCHTPWCRR 434
           S P+C     PRC+S + +R   C    SR +     R   C R +R   C C     R 
Sbjct: 4   SKPRCRPRCKPRCRSRSKKRCRRCRRRCSRIVKKCCRRRSKCCRRRRRCPCPCPRKKLRC 63

Query: 435 CQAR 446
           C+ R
Sbjct: 64  CKRR 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,531,499
Number of Sequences: 219361
Number of extensions: 728654
Number of successful extensions: 2003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)