ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart61g08 |
|---|---|
| Clone Library Name | barley_pub |
>Y1A7_ORYSA (Q9FRA7) Hypothetical protein P0001A07.13| Length = 253 Score = 86.7 bits (213), Expect = 2e-17 Identities = 51/119 (42%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Frame = +1 Query: 79 APTSFQKPPRSFDSRAMADSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPL 258 AP S +P + AE RLR L F YA A+ +GPL Sbjct: 8 APIS-NRPEEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPL 66 Query: 259 RPGVDAVESAVRGVAG----RFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQA 423 RPGVD VE V+ V G RFHGVP D+L F+DRKV +VQEL+R +PP VK A A Sbjct: 67 RPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLA 125
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 83.2 bits (204), Expect = 2e-16 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 4/98 (4%) Frame = +1 Query: 151 ERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAG----RFHG 318 E+ RL+ L F +YA A+D SGPL+PGV++VE AV+ V G ++H Sbjct: 18 EKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHD 77 Query: 319 VPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHA 432 VP +VL ++D+KVD +V EL+R +PP VK SAQA A Sbjct: 78 VPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISA 115
>SRP_VITRI (Q9SW70) Stress-related protein| Length = 248 Score = 80.1 bits (196), Expect = 2e-15 Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 4/95 (4%) Frame = +1 Query: 151 ERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAG----RFHG 318 E RL+ L F LY A+++SGPL+PGV VE V+ V G +F+ Sbjct: 16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYD 75 Query: 319 VPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQA 423 VPF++L FVDRKV+ ++ EL RH+P VK AS QA Sbjct: 76 VPFELLMFVDRKVEASIYELERHVPSLVKRASCQA 110
>REF_HEVBR (P15252) Rubber elongation factor protein (REF) (Allergen Hev b 1)| Length = 137 Score = 70.5 bits (171), Expect = 2e-12 Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Frame = +1 Query: 133 DSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVA--- 303 + +QQ + L+ LGF +Y A+D SGPL+PGVD +E V+ VA Sbjct: 4 EDNQQGQGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPL 63 Query: 304 -GRFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQACHA 432 RF +P L FVD V +V ++R LPP VK AS Q A Sbjct: 64 YNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSA 107
>Y2778_ARATH (O82246) Protein At2g47780| Length = 235 Score = 70.1 bits (170), Expect = 2e-12 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 4/112 (3%) Frame = +1 Query: 100 PPRSFDSRAMADSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAV 279 PP S S ++ + + +L+ L F LY LA+D++GPL+ GV+ + Sbjct: 22 PPSSSSSPSLV--VEDDDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENI 79 Query: 280 ESAVRGVAG----RFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQA 423 E VR V +FH VPF +L FVDRKVD ++ ++P VK AS+QA Sbjct: 80 EDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA 131
>SRPP_HEVBR (O82803) Small rubber particle protein (SRPP) (22 kDa rubber| particle protein) (22 kDa RPP) (Latex allergen Hev b 3) (27 kDa natural rubber allergen) Length = 204 Score = 69.3 bits (168), Expect = 4e-12 Identities = 34/94 (36%), Positives = 52/94 (55%) Frame = +1 Query: 139 SQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAGRFHG 318 +++ E RL+ L F LY A+D SGPL+PGVD +E+ V+ V + Sbjct: 2 AEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY 61 Query: 319 VPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQ 420 +P + + FVD+ VD +V L+ +PP +K SAQ Sbjct: 62 IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQ 95
>SRP_PHAVU (Q41112) Stress-related protein (PvSRP)| Length = 167 Score = 63.2 bits (152), Expect = 3e-10 Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Frame = +1 Query: 223 LYALARDHSGPLRPGVDAVESAVRGVAG----RFHGVPFDVLAFVDRKVDGTVQELNRHL 390 LY+ A++ +GPL+PGV+ VE AV+ V RFH VP ++L + DRKV EL+RH+ Sbjct: 6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVG----ELDRHV 61 Query: 391 PPAVKSASAQA 423 P VK S+QA Sbjct: 62 PSNVKKVSSQA 72
>Y1736_ARATH (Q9FYF7) Protein At1g67360| Length = 240 Score = 51.6 bits (122), Expect = 8e-07 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Frame = +1 Query: 127 MADSSQQAERPRLRRLGFXXXXXXXXXXXXXGLYALARDHSGPLRPGVDAVESAVRGVAG 306 M + ++ L+ L F LY A+ +SGPL+ V+ VE AV V Sbjct: 1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60 Query: 307 ----RFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSASAQA 423 +F VP +L F+D KV + + H PP K QA Sbjct: 61 PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQA 103
>HIS4_WOLSU (Q7M9W9) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 240 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 298 VAGRFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKSAS 414 +A F VP D + D DGT++ +NR A+ AS Sbjct: 149 LAALFREVPLDAIICTDISKDGTLEGINREFTQAIAEAS 187
>CSN2_XENLA (Q6IR75) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Fragment) Length = 441 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 226 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 264
>CSN2_RAT (P61203) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>CSN2_MOUSE (P61202) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>CSN2_HUMAN (P61201) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Dch2) (Alien protein) Length = 444 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 229 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 267
>CSN2_BRARE (Q6IQT4) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| Length = 443 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 1 IPFPVLAVAGRKEGGKSHLRRVDFAFAPTSFQKPPRSFD 117 IP P++ R+ GGK HLR +F A T F + +++D Sbjct: 228 IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 266
>RAD18_SCHPO (O74747) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) (RAD18 homolog) Length = 387 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 347 STKARTSKGTPWKRPATPLTADSTASTPGRSGPE 246 ST+ TS G P + PLT D T S G GP+ Sbjct: 353 STEPSTSNGFPATSVSPPLTIDLTNSQTGSDGPQ 386
>TRPF_HALMA (Q5V212) N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3.1.24)| (PRAI) Length = 214 Score = 29.3 bits (64), Expect = 4.2 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +1 Query: 271 DAVESAVRGVAGRFHGVPFDVLAFVDRKVDGTVQELNRHLPPAVKS 408 DAV +A G HGVP D VD +GT + + +PP V S Sbjct: 16 DAVVTAGADAVGIIHGVPVDTPREVD---EGTAETIADGVPPFVTS 58
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 29.3 bits (64), Expect = 4.2 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Frame = -3 Query: 368 TVPSTFRSTKARTSKGTPWKRPATPLTADSTAS---TPGRSGPEWSLASA*SPA 216 T P+ RST S+ +PW R TAS T R+G WS S S A Sbjct: 196 TPPTWQRSTSMPPSRASPWPRYGRRWRTAGTASRTTTRTRTGRSWSTGSIVSAA 249
>ATS4_RAT (Q9ESP7) ADAMTS-4 precursor (EC 3.4.24.82) (A disintegrin and| metalloproteinase with thrombospondin motifs 4) (ADAM-TS 4) (ADAM-TS4) (Aggrecanase 1) (Fragment) Length = 630 Score = 28.9 bits (63), Expect = 5.5 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = -3 Query: 428 WHAWADADFTAGGRCRFSS--CTVPSTFRSTKARTSKGTPWK 309 W W D T GG +FSS CT P K + TP++ Sbjct: 319 WGPWGDCSRTCGGGVQFSSRDCTKPVPRNGGKYCEGRRTPFR 360
>PHF3_HUMAN (Q92576) PHD finger protein 3| Length = 2039 Score = 28.9 bits (63), Expect = 5.5 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Frame = -3 Query: 422 AWADADFTAGGRC--RFSSCTVPSTFRSTKARTSKGTPWKRPATPLTADSTASTPG 261 A A + F G C F S ++ T RST RTS RP P +S PG Sbjct: 1759 AVATSHFEVGNTCPSEFPSKSITFTSRSTSPRTSTNFSPMRPQQPNLQHLKSSPPG 1814
>S10AE_MOUSE (Q9D2Q8) Protein S100-A14 (S100 calcium-binding protein A14) (S114)| Length = 104 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%) Frame = -3 Query: 152 SACWLESAIARESN------ERGGFWKLVGANAKSTR 60 S C LE IA N E G FW+L+G AKS + Sbjct: 60 SNCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVK 96
>S10AE_BOVIN (Q3MHP3) Protein S100-A14 (S100 calcium-binding protein A14)| Length = 104 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%) Frame = -3 Query: 152 SACWLESAIARESN------ERGGFWKLVGANAKSTR 60 S C LE IA N E G FW+L+G AKS + Sbjct: 60 SNCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVK 96
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -3 Query: 386 CRFSSC-TVPSTFRSTKARTSKGTPWKRPATPLTADSTASTPGRSGPEWSLASA*SP 219 C + C + P+T + ++ GT W TA +TAST + P + +A P Sbjct: 4165 CNYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTASTGSTATPSSTPGTAPPP 4221 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -3 Query: 386 CRFSSC-TVPSTFRSTKARTSKGTPWKRPATPLTADSTASTPGRSGPEWSLASA*SP 219 C + C + P+T + ++ GT W TA +T ST + P +L +A P Sbjct: 2409 CNYGHCPSTPATSSTATPSSTPGTTWILTELTTTATTTESTGSTATPTSTLRTAPPP 2465
>MAP2_HUMAN (P11137) Microtubule-associated protein 2 (MAP 2) (MAP-2)| Length = 1827 Score = 28.1 bits (61), Expect = 9.4 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = -3 Query: 377 SSCTVPSTFRSTKARTSKGTPWKRP-----ATPLTADSTASTPGRSGPEWSLASA*SP 219 +S ++ S+ S+ RT++ P +R +TP T STA TPG + P +S + +P Sbjct: 1561 NSFSLNSSISSSARRTTRSEPIRRAGKSGTSTPTTPGSTAITPG-TPPSYSSRTPGTP 1617
>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (E3Histone) Length = 4377 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -3 Query: 389 RCRFSSCTVPSTFRSTKARTSKGTPW--KRPATPLTADSTAS 270 R + + CTV T ST+ S GTP P TP + D+ S Sbjct: 2715 RDQSAQCTVTKTNDSTEQNVSDGTPMPDSYPTTPSSTDAPTS 2756 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,270,077 Number of Sequences: 219361 Number of extensions: 740832 Number of successful extensions: 3335 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3321 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
