ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl01h09 |
|---|---|
| Clone Library Name | barley_pub |
>TRI35_HUMAN (Q9UPQ4) Tripartite motif protein 35 (Hemopoeitic lineage switch| protein 5) Length = 493 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -3 Query: 188 FVHASHAWRLEVGGWRAWELGVQAKRAWFVGRFHCH 81 F SHAW + +GG ++W +GV R H H Sbjct: 351 FSQGSHAWEVALGGLQSWRVGVVRVRQDSGAEGHSH 386
>CLN5_HUMAN (O75503) Ceroid-lipofuscinosis neuronal protein 5 (Protein CLN5)| Length = 407 Score = 30.0 bits (66), Expect = 3.4 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 135 GVGSASKTSMVCWTLSLSWLVVLGAVVR*TGVVERK 28 G G+A + CW L+L WL V+ R +G+ R+ Sbjct: 65 GAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRR 100
>UVRB_ANASP (Q8YXS9) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 665 Score = 24.6 bits (52), Expect(2) = 4.4 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -2 Query: 99 WTLSLSWLVVLGAVVR*TGVVERKIRLRIQDG 4 W L +S ++ V+R TGV++ +I +R +G Sbjct: 397 WELEISENRIVEQVIRPTGVIDPEISVRPTEG 428 Score = 23.5 bits (49), Expect(2) = 4.4 Identities = 8/15 (53%), Positives = 9/15 (60%) Frame = -1 Query: 184 FTPHTPGGWRLEVGE 140 F TPG W LE+ E Sbjct: 389 FVSATPGNWELEISE 403
>BT3A1_HUMAN (O00481) Butyrophilin subfamily 3 member A1 precursor (CD277| antigen) Length = 513 Score = 29.3 bits (64), Expect = 5.8 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -3 Query: 191 AFVHASHAWRLEVGGWRAWELGVQAK 114 +F+ H W +EVG + W +GV +K Sbjct: 389 SFISGRHYWEVEVGDRKEWHIGVCSK 414
>TRI35_MOUSE (Q8C006) Tripartite motif protein 35 (Macrophage-derived| apoptosis-inducing RBCC protein) (MAIR protein) (Nc8 protein) (Hemopoeitic lineage switch protein 5) Length = 501 Score = 29.3 bits (64), Expect = 5.8 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -3 Query: 188 FVHASHAWRLEVGGWRAWELGV 123 F SH+W ++VGG W +GV Sbjct: 351 FSKGSHSWEVDVGGLPTWRVGV 372
>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois| homeobox protein 1) (Homeodomain protein IRXA1) Length = 480 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 314 PFPAPHSNHVFPFP*HNQPPLQILPGIIAGKR 409 P APH H+ P P QPP+ I PG + G + Sbjct: 397 PHAAPHGPHL-PAPPPPQPPVAIAPGALNGDK 427
>FUT8_PIG (P79282) Alpha-(1,6)-fucosyltransferase (EC 2.4.1.68) (Glycoprotein| 6-alpha-L-fucosyltransferase) (GDP-fucose--glycoprotein fucosyltransferase) (GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,6-fucosyltransferase) (alpha1-6FucT) (Fucosyltransfer Length = 575 Score = 28.9 bits (63), Expect = 7.6 Identities = 24/106 (22%), Positives = 39/106 (36%) Frame = -3 Query: 461 WQRAERRGMDQR*QKRVAFSQQ*SQEGFAKEVDCVKGRERRDLSVGLEKGFGCLLDLI*Q 282 W+ E + + + Q+R+ + Q AK++ C ++ G+GC L + Sbjct: 179 WREKEAKDLTELVQRRITYLQNPKDCSKAKKLVC---------NINKGCGYGCQLHHVVY 229 Query: 281 SGMIGHLEISMNLNKSW*WIGQCYASTRDMAFVHASHAWRLEVGGW 144 MI Y + R +A SH WR GGW Sbjct: 230 CFMIA------------------YGTQRTLAL--ESHNWRYATGGW 255
>LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1| Length = 244 Score = 28.9 bits (63), Expect = 7.6 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 226 GLANAMPLHGIWHSFTPHTPGGWRLE 149 G A A PL+G +HS PH+ G R E Sbjct: 38 GSARAAPLNGAFHSHQPHSQGYARAE 63
>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)| Length = 610 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -3 Query: 218 QCYASTRDMAFVHASHAWRLEVGGWRAWELGVQAK 114 QC F H W +EVG AW++G+ ++ Sbjct: 473 QCILVLGSQGFDSGRHYWEVEVGDKTAWDVGMASE 507
>DAG1_CANFA (Q9TSZ6) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 892 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/65 (30%), Positives = 25/65 (38%) Frame = +2 Query: 5 PSWIRRRIFLSTTPVYLTTAPNTTNHDSESVQQTMLVLLALPTPKLSNLQPPTSRRVRRE 184 P IRR+I + TPV P T + S +PTP + PPT Sbjct: 304 PKRIRRQIHATPTPVTAIGPPTTAIQEPPS--------RIVPTPTSPAIAPPTETMAPPV 355 Query: 185 RMPYP 199 R P P Sbjct: 356 RDPVP 360
>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/65 (30%), Positives = 25/65 (38%) Frame = +2 Query: 5 PSWIRRRIFLSTTPVYLTTAPNTTNHDSESVQQTMLVLLALPTPKLSNLQPPTSRRVRRE 184 P IRR+I + TPV P T + S +PTP + PPT Sbjct: 307 PKRIRRQIHATPTPVTAIGPPTTAIQEPPS--------RIVPTPTSPAIAPPTETMAPPV 358 Query: 185 RMPYP 199 R P P Sbjct: 359 RDPVP 363
>DAG1_BOVIN (O18738) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/65 (30%), Positives = 25/65 (38%) Frame = +2 Query: 5 PSWIRRRIFLSTTPVYLTTAPNTTNHDSESVQQTMLVLLALPTPKLSNLQPPTSRRVRRE 184 P IRR+I + TPV P T + S +PTP + PPT Sbjct: 307 PKRIRRQIHATPTPVTAIGPPTTAIQEPPS--------RIVPTPTSPAIAPPTETMAPPV 358 Query: 185 RMPYP 199 R P P Sbjct: 359 RDPVP 363
>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)| Length = 609 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -3 Query: 218 QCYASTRDMAFVHASHAWRLEVGGWRAWELGVQAK 114 QC F H W +EVG AW++G+ ++ Sbjct: 472 QCILVLGSQGFDSGRHYWEVEVGDKTAWDVGMASE 506
>NADE_COREF (Q8FMS2) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)| Length = 277 Score = 28.5 bits (62), Expect = 9.9 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = -1 Query: 313 DLGVCLISSSKAA*SVTSRFP*TSIKVGDGLANAMPLHGI 194 +LG+ ++ + AA +VT F K GDG A+ +PL G+ Sbjct: 153 ELGLLVVGTDHAAENVTGFFT----KYGDGAADVLPLAGL 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,770,673 Number of Sequences: 219361 Number of extensions: 1722405 Number of successful extensions: 4770 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4500 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4760 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
