ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SET2_CAEEL (Q18221) Protein set-2 28 6.7
2GROU_DROME (P16371) Protein groucho (Enhancer of split m9/10 pro... 28 8.8
3CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (... 28 8.8

>SET2_CAEEL (Q18221) Protein set-2|
          Length = 1507

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 15  PSRGHPSNPLRTPPEHHRPEENPS 86
           P +GHPS  L+TP +H +P+  P+
Sbjct: 558 PPKGHPSVHLQTPYQHVQPQMIPA 581



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>GROU_DROME (P16371) Protein groucho (Enhancer of split m9/10 protein)|
           (E(spl)m9/10)
          Length = 719

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 30  PSNPLRTPPEHHRPEENPS 86
           P   L  PPEHHRP+  P+
Sbjct: 161 PQGLLNKPPEHHRPDIKPT 179



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>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)|
          Length = 1002

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 12  FPSRGHPSNPLRTPPEHHRPEENPSP 89
           FP+   P   +  PP HH+P E+  P
Sbjct: 197 FPAHHEPGEHMPPPPMHHKPGEHMPP 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,072,296
Number of Sequences: 219361
Number of extensions: 646473
Number of successful extensions: 2661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2659
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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