>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 690

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 100 ERGRDKEISRGRETSRDRDGGEEVSRRQ 183
           + GRD+E   GRE SRDR+ G + SR Q
Sbjct: 217 DNGRDRE--NGRENSRDRENGRDGSREQ 242

>JAK3_MOUSE (Q62137) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase|
           3) (JAK-3)
          Length = 1299

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 177 PGDLLATISVSACLPPS 127
           PG+LL T+S  ACLPPS
Sbjct: 181 PGELLKTVSYKACLPPS 197

>JAK3_HUMAN (P52333) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase|
           3) (JAK-3) (Leukocyte janus kinase) (L-JAK)
          Length = 1124

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 177 PGDLLATISVSACLPPS 127
           PG+LL T+S  ACLPPS
Sbjct: 181 PGELLKTVSYKACLPPS 197

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 21/64 (32%), Positives = 26/64 (40%)
 Frame = +2

Query: 86  SHPHQREGEIKRFREGGRQAETEMVARRSPGGKPFTPSTR*RCAPPPPHLPLRFAAARGL 265
           SHP    GE  R   GG + + +     SP  +P  P       PPPP  P    +AR  
Sbjct: 247 SHPMGEGGEGDRGTAGGGEGDRDDPPPPSPPPRPPPPLPPPPPPPPPPQPPPAGGSARRR 306

Query: 266 REKG 277
           R  G
Sbjct: 307 RRGG 310

>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 504

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 55  PTGQGEKIQR*PPTPERGRDKEISRGRETSRDRDGGEEVSRRQ 183
           P+ +G K  R   +P+R RD+E  R R   RDRD   + S R+
Sbjct: 411 PSSRGSKRDR-ERSPKRERDRERERDRSPRRDRDRERDRSPRR 452

>CCD71_MOUSE (Q8VEG0) Coiled-coil domain-containing protein 71|
          Length = 433

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
 Frame = +2

Query: 65  KGKKYRDSHPHQREGEIK-RFREGGRQAETEMVARRSPGG---KPFTPSTR*RCAPPPPH 232
           K K  +  H  + +G ++ R     R+  +E V R+       K   P  R RC P PP 
Sbjct: 323 KAKAAQTKHKGKPKGSVQTRTGRANRKNSSETVGRKRKKAEETKGLPPKKRARCVPRPPK 382

Query: 233 LPLRFAAARGLREKGIFF--LCADD-------QTTMMTVAPPVW 337
           + L    A+  + + I     C+DD       Q   + ++P VW
Sbjct: 383 VWLGPGTAKPRKSQTIKVDRKCSDDEVRQCAQQILRVNLSPVVW 426

>ANKS3_HUMAN (Q6ZW76) Ankyrin repeat and SAM domain-containing protein 3|
          Length = 656

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +1

Query: 322 GAASMGIAAPPC-----QATRQHVSTPKSSAAIQD 411
           GAA++G+A PP      QA+ Q +S P+ S A++D
Sbjct: 592 GAATLGLAVPPADSKGWQASLQAMSLPELSGALED 626

>IF31_YEAST (Q05775) Probable eukaryotic translation initiation factor 3 30 kDa|
           subunit (eIF-3 30 kDa) (eIF3j)
          Length = 265

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +1

Query: 31  GDQELLLRPTGQGEKIQR*PPTPERGRDKEISRGRETSRDR 153
           GD E +++     E+ ++  P P++ + K++ +G+E+S DR
Sbjct: 28  GDDEPVMQSWDAEEEEKKPAPKPKKEQPKKVKKGKESSADR 68

>JAK3_RAT (Q63272) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase|
           3) (JAK-3)
          Length = 1100

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 177 PGDLLATISVSACLPPS 127
           PG+LL ++S  ACLPPS
Sbjct: 181 PGELLKSVSYKACLPPS 197

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
 Frame = +1

Query: 19  AIAQGDQELLLRPTGQGEKIQR*PPTP-------------ERGRDKEISRGRETSRDRDG 159
           A A G   +L+ P+    +I+  PP P             ER RD+E  R RE  RDRD 
Sbjct: 368 AAAAGHVTVLVTPS----RIKSEPPPPASPSSTSSTQRERERERDRERDRERERERDRD- 422

Query: 160 GEEVSRRQAFHS 195
             E  R Q+  S
Sbjct: 423 -REREREQSISS 433

>YR871_MIMIV (Q5UP41) Hypothetical protein R871|
          Length = 561

 Score = 24.6 bits (52), Expect(2) = 7.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 26  HKATKNCCFARPDKGKKYRDSHPHQREGEIKRFR 127
           HK++K+   ++ DK  K   SH  + +   KR+R
Sbjct: 152 HKSSKHDKSSKRDKSSKRHKSHKKKDKSHKKRYR 185



 Score = 22.7 bits (47), Expect(2) = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 RDKEISRGRETSRDR 153
           RD+ +SR R  SRDR
Sbjct: 213 RDRSLSRDRSLSRDR 227

>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 100 ERGRDKEISRGRETSRDRDGGE 165
           +RGRD+E  R R   RDRD GE
Sbjct: 711 DRGRDRERERERICDRDRDRGE 732

>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1|
          Length = 720

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 71  KKYRDSHPHQREGEIKRFREGGRQAETEMVARRSPGGKPFTPSTR*RCAPPPP 229
           ++Y D+   +R+ +++  RE  + A      ++ P GK F   T  R  PPPP
Sbjct: 649 QRYLDAEEAKRQ-KVQAEREAAKAATKSEAEKQKPSGK-FEEGTGGRAPPPPP 699

>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor|
           YT521)
          Length = 727

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 100 ERGRDKEISRGRETSRDRDGGE 165
           +RGRD+E  R R   RDRD GE
Sbjct: 700 DRGRDRERERERLCDRDRDRGE 721

>EGL27_CAEEL (Q09228) Egg-laying defective protein 27|
          Length = 1129

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 1    ALPFQKAIAQGDQELLLRPTGQGEKIQR*PPTPERGRDKEISRGRETSRDRDGGEEVSRR 180
            AL    A +Q D   L+    Q ++ Q+     +  RD+E  R    +R+R+   E  R 
Sbjct: 964  ALMANSAASQQDIARLMEMAAQQQQQQQQAAQAQAQRDQERERREREAREREAARERERE 1023

Query: 181  QA 186
            QA
Sbjct: 1024 QA 1025

>Y636_BIFLO (Q8G6K4) UPF0232 protein BL0636|
          Length = 156

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 345 GATVSGDQAAREHAQEQCGDPGRRPAGHGEFYVPLPG 455
           GAT+   +  RE A E  G PGR PA  G     + G
Sbjct: 28  GATLKDYRRRREEAIENFGKPGRDPAELGSVMTTIAG 64

>FIP1_MOUSE (Q9D824) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 581

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 ERGRDKEISRGRETSRDRDGGEEVSRRQAFHSLHEIT 210
           +R RD+E  R RE  RDRD   E +R +     H  T
Sbjct: 445 DRDRDRERDRDRERERDRDRERERTRERERERDHSPT 481

>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
           (Williams-Beuren syndrome chromosome region 9 protein)
           (WBRS9) (Williams syndrome transcription factor)
           (hWALP2)
          Length = 1483

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 27/101 (26%), Positives = 44/101 (43%)
 Frame = +2

Query: 29  KATKNCCFARPDKGKKYRDSHPHQREGEIKRFREGGRQAETEMVARRSPGGKPFTPSTR* 208
           K+   C     DK    + +  HQ++  + +  EG R++  +  ARRSP   P +     
Sbjct: 151 KSDGACDSPSSDKENSSQIAQDHQKKETVVKEDEGRRESINDR-ARRSPRKLPTSLKKGE 209

Query: 209 RCAPPPPHLPLRFAAARGLREKGIFFLCADDQTTMMTVAPP 331
           R   PP  LP ++       +K I  + AD  + + T  PP
Sbjct: 210 RKWAPPKFLPHKYDVKLQNEDKIISNVPAD--SLIRTERPP 248

>FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
           (Factor interacting with PAP) (hFip1) (Rearranged in
           hypereosinophilia)
          Length = 594

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 ERGRDKEISRGRETSRDRDGGEEVSRRQAFHSLHEIT 210
           E+ RD+E  R RE  RDRD   E +R +     H  T
Sbjct: 458 EKDRDRERDRDRERDRDRDRERERTRERERERDHSPT 494

>FIP1_PONPY (Q5RAA7) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 588

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 ERGRDKEISRGRETSRDRDGGEEVSRRQAFHSLHEIT 210
           E+ RD+E  R RE  RDRD   E +R +     H  T
Sbjct: 452 EKDRDRERDRDRERDRDRDRERERTRERERERDHSPT 488

>ADM1B_MOUSE (Q8R534) ADAM 1b precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 1b) (Fertilin alpha 1b subunit)
          Length = 806

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 13  QKAIAQGDQELLLRPTGQGEKIQR*PPTPERGRDKEISRGRETSRDRDGGEEVSRRQA 186
           + A   G  EL   P G+ E+ +   P   +G ++E+  G+E + ++   EE    +A
Sbjct: 731 ETASEAGPSELEELPEGEKEEQEEVLPEEAKGEEEELEYGKEEAEEQGAVEEEGAEEA 788

>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)|
          Length = 536

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 ERGRDKEISRGRETSRDRDGGEEVSRRQAFHSLHEIT 210
           +R RD+E  R RE  RDRD   E +R +     H  T
Sbjct: 400 DRDRDRERDRDRERERDRDRERERTRERERERDHSPT 436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,462,311
Number of Sequences: 219361
Number of extensions: 1531605
Number of successful extensions: 5787
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5726
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)