ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190848.1| Oryza sativa (japonica cultivar-group), predic... 432 e-118
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 432 e-118
3dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic D... 432 e-118
4dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic D... 432 e-118
5dbj|AK120325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 432 e-118
6emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 44 0.41
7ref|XM_427467.1| PREDICTED: Gallus gallus similar to KIAA1623 pr... 42 1.6
8gb|AC111182.20| Homo sapiens chromosome 17, clone RP11-936I5, co... 42 1.6
9gb|AC069257.28| Homo sapiens 3 BAC RP11-447L10 (Roswell Park Can... 42 1.6
10gb|AC044864.6| Mus musculus chromosome 3, clone RP23-168E14, com... 40 6.3
11gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, com... 40 6.3
12gb|DQ178241.1| Caenorhabditis elegans argonaute-like (alg-1) mRN... 40 6.3
13gb|AY456038.1| Gibberella moniliformis putative histidine kinase... 40 6.3
14emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, comple... 40 6.3
15emb|CR727863.2|CNS0GOKD Tetraodon nigroviridis full-length cDNA 40 6.3
16gb|AC105446.4| Homo sapiens BAC clone RP11-395B7 from 7, complet... 40 6.3
17gb|AY034092.1| Micrococcus sp. 28 plasmid pSD10, complete sequence 40 6.3
18gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.3
19gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.3
20emb|AL137059.20| Human DNA sequence from clone RP11-125I23 on ch... 40 6.3
21emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.3
22emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 6.3
23ref|NM_077921.3| Caenorhabditis elegans Argonaute (plant)-Like G... 40 6.3
24gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.3
25ref|XM_341782.2| PREDICTED: Rattus norvegicus EPS8-like 1 (predi... 40 6.3
26dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.3
27gb|AF148553.1|AF148553 Thiobacillus denitrificans hypothetical p... 40 6.3
28gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.3
29emb|AL837521.6| Mouse DNA sequence from clone RP23-28I8 on chrom... 40 6.3 
>ref|NM_190848.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3018

 Score =  432 bits (218), Expect = e-118
 Identities = 305/334 (91%)
 Strand = Plus / Plus

                                                                       
Query: 131 gatggagttcgtggcgtccatcgtggacacggcgttccggccgctcaaggactacttcgc 190
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 288 gatggagttcgtggcgtccatcgtggacgcggtgttccggccgctcaaggactacttcgc 347

                                                                       
Query: 191 gcggacgttcggctacgtcatgtcctgcggcgactacatcgacgcgctgggccacgagat 250
            ||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 348 ccggacgttcgggtatgtcatgtcctgcggcgactacatcgacctgctgggccacgagat 407

                                                                       
Query: 251 ggacgagctcaagagcaagcgcgacgacgtcaagcgcatggtggacaccgcggagcgcca 310
           |||||||||||||||||||||||||||||| |||||| |||| |||  ||| ||||||| 
Sbjct: 408 ggacgagctcaagagcaagcgcgacgacgtgaagcgcctggtcgacgtcgccgagcgccg 467

                                                                       
Query: 311 ggggctggaggccaccagccaggtcaagcggtggctcgagtgcgtctccaggctcgagga 370
           |||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 468 gggcatggaggccaccagccaggtcaagtggtggctcgagtgtgtctccaggctcgagga 527

                                                                       
Query: 371 cgccgccgcccggatccacgccgagtaccaggcgcgcctgcagctcccgcccgaccaggc 430
           |||||||||||||||| | |  ||||||||||||||||| |  || || ||||| |||||
Sbjct: 528 cgccgccgcccggatcgaggaggagtaccaggcgcgcctccgccttccccccgagcaggc 587

                                             
Query: 431 gcccggcctcagggccacctaccgcctcagccag 464
           ||||||||||||||||||||||| ||||||||||
Sbjct: 588 gcccggcctcagggccacctaccacctcagccag 621
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  432 bits (218), Expect = e-118
 Identities = 305/334 (91%)
 Strand = Plus / Minus

                                                                            
Query: 131      gatggagttcgtggcgtccatcgtggacacggcgttccggccgctcaaggactacttcgc 190
                |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 33456693 gatggagttcgtggcgtccatcgtggacgcggtgttccggccgctcaaggactacttcgc 33456634

                                                                            
Query: 191      gcggacgttcggctacgtcatgtcctgcggcgactacatcgacgcgctgggccacgagat 250
                 ||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 33456633 ccggacgttcgggtatgtcatgtcctgcggcgactacatcgacctgctgggccacgagat 33456574

                                                                            
Query: 251      ggacgagctcaagagcaagcgcgacgacgtcaagcgcatggtggacaccgcggagcgcca 310
                |||||||||||||||||||||||||||||| |||||| |||| |||  ||| ||||||| 
Sbjct: 33456573 ggacgagctcaagagcaagcgcgacgacgtgaagcgcctggtcgacgtcgccgagcgccg 33456514

                                                                            
Query: 311      ggggctggaggccaccagccaggtcaagcggtggctcgagtgcgtctccaggctcgagga 370
                |||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 33456513 gggcatggaggccaccagccaggtcaagtggtggctcgagtgtgtctccaggctcgagga 33456454

                                                                            
Query: 371      cgccgccgcccggatccacgccgagtaccaggcgcgcctgcagctcccgcccgaccaggc 430
                |||||||||||||||| | |  ||||||||||||||||| |  || || ||||| |||||
Sbjct: 33456453 cgccgccgcccggatcgaggaggagtaccaggcgcgcctccgccttccccccgagcaggc 33456394

                                                  
Query: 431      gcccggcctcagggccacctaccgcctcagccag 464
                ||||||||||||||||||||||| ||||||||||
Sbjct: 33456393 gcccggcctcagggccacctaccacctcagccag 33456360
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>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0557A01
          Length = 147201

 Score =  432 bits (218), Expect = e-118
 Identities = 305/334 (91%)
 Strand = Plus / Minus

                                                                        
Query: 131  gatggagttcgtggcgtccatcgtggacacggcgttccggccgctcaaggactacttcgc 190
            |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 1890 gatggagttcgtggcgtccatcgtggacgcggtgttccggccgctcaaggactacttcgc 1831

                                                                        
Query: 191  gcggacgttcggctacgtcatgtcctgcggcgactacatcgacgcgctgggccacgagat 250
             ||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 1830 ccggacgttcgggtatgtcatgtcctgcggcgactacatcgacctgctgggccacgagat 1771

                                                                        
Query: 251  ggacgagctcaagagcaagcgcgacgacgtcaagcgcatggtggacaccgcggagcgcca 310
            |||||||||||||||||||||||||||||| |||||| |||| |||  ||| ||||||| 
Sbjct: 1770 ggacgagctcaagagcaagcgcgacgacgtgaagcgcctggtcgacgtcgccgagcgccg 1711

                                                                        
Query: 311  ggggctggaggccaccagccaggtcaagcggtggctcgagtgcgtctccaggctcgagga 370
            |||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 1710 gggcatggaggccaccagccaggtcaagtggtggctcgagtgtgtctccaggctcgagga 1651

                                                                        
Query: 371  cgccgccgcccggatccacgccgagtaccaggcgcgcctgcagctcccgcccgaccaggc 430
            |||||||||||||||| | |  ||||||||||||||||| |  || || ||||| |||||
Sbjct: 1650 cgccgccgcccggatcgaggaggagtaccaggcgcgcctccgccttccccccgagcaggc 1591

                                              
Query: 431  gcccggcctcagggccacctaccgcctcagccag 464
            ||||||||||||||||||||||| ||||||||||
Sbjct: 1590 gcccggcctcagggccacctaccacctcagccag 1557
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>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0415A04
          Length = 160669

 Score =  432 bits (218), Expect = e-118
 Identities = 305/334 (91%)
 Strand = Plus / Minus

                                                                          
Query: 131    gatggagttcgtggcgtccatcgtggacacggcgttccggccgctcaaggactacttcgc 190
              |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 132859 gatggagttcgtggcgtccatcgtggacgcggtgttccggccgctcaaggactacttcgc 132800

                                                                          
Query: 191    gcggacgttcggctacgtcatgtcctgcggcgactacatcgacgcgctgggccacgagat 250
               ||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 132799 ccggacgttcgggtatgtcatgtcctgcggcgactacatcgacctgctgggccacgagat 132740

                                                                          
Query: 251    ggacgagctcaagagcaagcgcgacgacgtcaagcgcatggtggacaccgcggagcgcca 310
              |||||||||||||||||||||||||||||| |||||| |||| |||  ||| ||||||| 
Sbjct: 132739 ggacgagctcaagagcaagcgcgacgacgtgaagcgcctggtcgacgtcgccgagcgccg 132680

                                                                          
Query: 311    ggggctggaggccaccagccaggtcaagcggtggctcgagtgcgtctccaggctcgagga 370
              |||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 132679 gggcatggaggccaccagccaggtcaagtggtggctcgagtgtgtctccaggctcgagga 132620

                                                                          
Query: 371    cgccgccgcccggatccacgccgagtaccaggcgcgcctgcagctcccgcccgaccaggc 430
              |||||||||||||||| | |  ||||||||||||||||| |  || || ||||| |||||
Sbjct: 132619 cgccgccgcccggatcgaggaggagtaccaggcgcgcctccgccttccccccgagcaggc 132560

                                                
Query: 431    gcccggcctcagggccacctaccgcctcagccag 464
              ||||||||||||||||||||||| ||||||||||
Sbjct: 132559 gcccggcctcagggccacctaccacctcagccag 132526
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>dbj|AK120325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057M10, full
           insert sequence
          Length = 3354

 Score =  432 bits (218), Expect = e-118
 Identities = 305/334 (91%)
 Strand = Plus / Plus

                                                                       
Query: 131 gatggagttcgtggcgtccatcgtggacacggcgttccggccgctcaaggactacttcgc 190
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 321 gatggagttcgtggcgtccatcgtggacgcggtgttccggccgctcaaggactacttcgc 380

                                                                       
Query: 191 gcggacgttcggctacgtcatgtcctgcggcgactacatcgacgcgctgggccacgagat 250
            ||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 381 ccggacgttcgggtatgtcatgtcctgcggcgactacatcgacctgctgggccacgagat 440

                                                                       
Query: 251 ggacgagctcaagagcaagcgcgacgacgtcaagcgcatggtggacaccgcggagcgcca 310
           |||||||||||||||||||||||||||||| |||||| |||| |||  ||| ||||||| 
Sbjct: 441 ggacgagctcaagagcaagcgcgacgacgtgaagcgcctggtcgacgtcgccgagcgccg 500

                                                                       
Query: 311 ggggctggaggccaccagccaggtcaagcggtggctcgagtgcgtctccaggctcgagga 370
           |||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 501 gggcatggaggccaccagccaggtcaagtggtggctcgagtgtgtctccaggctcgagga 560

                                                                       
Query: 371 cgccgccgcccggatccacgccgagtaccaggcgcgcctgcagctcccgcccgaccaggc 430
           |||||||||||||||| | |  ||||||||||||||||| |  || || ||||| |||||
Sbjct: 561 cgccgccgcccggatcgaggaggagtaccaggcgcgcctccgccttccccccgagcaggc 620

                                             
Query: 431 gcccggcctcagggccacctaccgcctcagccag 464
           ||||||||||||||||||||||| ||||||||||
Sbjct: 621 gcccggcctcagggccacctaccacctcagccag 654
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 254     cgagctcaagagcaagcgcgac 275
               ||||||||||||||||||||||
Sbjct: 2620478 cgagctcaagagcaagcgcgac 2620457
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>ref|XM_427467.1| PREDICTED: Gallus gallus similar to KIAA1623 protein (LOC429912),
           partial mRNA
          Length = 823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 cacgccgagtaccaggcgcgc 407
           |||||||||||||||||||||
Sbjct: 319 cacgccgagtaccaggcgcgc 339
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>gb|AC111182.20| Homo sapiens chromosome 17, clone RP11-936I5, complete sequence
          Length = 171898

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 428   ggcgcccggcctcagggccac 448
             |||||||||||||||||||||
Sbjct: 75762 ggcgcccggcctcagggccac 75782
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>gb|AC069257.28| Homo sapiens 3 BAC RP11-447L10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188969

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 426    caggcgcccggcctcagggcc 446
              |||||||||||||||||||||
Sbjct: 162676 caggcgcccggcctcagggcc 162696
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>gb|AC044864.6| Mus musculus chromosome 3, clone RP23-168E14, complete sequence
          Length = 224119

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     atcaggttcttggcagatca 82
              ||||||||||||||||||||
Sbjct: 210385 atcaggttcttggcagatca 210366
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>gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, complete sequence
          Length = 166620

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     atcaggttcttggcagatca 82
              ||||||||||||||||||||
Sbjct: 137682 atcaggttcttggcagatca 137701
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>gb|DQ178241.1| Caenorhabditis elegans argonaute-like (alg-1) mRNA, exons, and
            partial cds
          Length = 4583

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  agcggtggctcgagtgcgtc 356
            ||||||||||||||||||||
Sbjct: 1738 agcggtggctcgagtgcgtc 1719
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>gb|AY456038.1| Gibberella moniliformis putative histidine kinase NIK1p (NIK1) gene,
            complete cds
          Length = 4182

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 246  gagatggacgagctcaagagcaag 269
            |||||||||||||||||| |||||
Sbjct: 2258 gagatggacgagctcaagcgcaag 2281
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>emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, complete sequence
          Length = 29820

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  agcggtggctcgagtgcgtc 356
            ||||||||||||||||||||
Sbjct: 1813 agcggtggctcgagtgcgtc 1794
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>emb|CR727863.2|CNS0GOKD Tetraodon nigroviridis full-length cDNA
          Length = 1023

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 acgagctcaagagcaagcgc 272
           ||||||||||||||||||||
Sbjct: 824 acgagctcaagagcaagcgc 843
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>gb|AC105446.4| Homo sapiens BAC clone RP11-395B7 from 7, complete sequence
          Length = 139517

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 312    gggctggaggccaccagccaggtc 335
              ||||||||| ||||||||||||||
Sbjct: 122572 gggctggagtccaccagccaggtc 122549
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>gb|AY034092.1| Micrococcus sp. 28 plasmid pSD10, complete sequence
          Length = 50709

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   cccgcccgaccaggcgcccg 435
             ||||||||||||||||||||
Sbjct: 50194 cccgcccgaccaggcgcccg 50213
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     gcgctgggccacgagatgga 253
               ||||||||||||||||||||
Sbjct: 2119572 gcgctgggccacgagatgga 2119591
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 384     atccacgccgagtaccaggcgcgc 407
               |||||||||||||| |||||||||
Sbjct: 3380493 atccacgccgagtatcaggcgcgc 3380516
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>emb|AL137059.20| Human DNA sequence from clone RP11-125I23 on chromosome 13 Contains the
              MTIF3 gene for mitochondrial translational initiation
              factor 3, the GTF3A gene for general transcription factor
              IIIA (AP2, TFIIIA) and two CpG islands, complete sequence
          Length = 166141

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    caggggctggaggccaccag 328
              ||||||||||||||||||||
Sbjct: 122118 caggggctggaggccaccag 122099
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    gctggaggccaccagccagg 333
              ||||||||||||||||||||
Sbjct: 316294 gctggaggccaccagccagg 316313
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    gctggaggccaccagccagg 333
              ||||||||||||||||||||
Sbjct: 224148 gctggaggccaccagccagg 224167
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>ref|NM_077921.3| Caenorhabditis elegans Argonaute (plant)-Like Gene family member
            (alg-1) (alg-1) mRNA, complete cds
          Length = 3406

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 337  agcggtggctcgagtgcgtc 356
            ||||||||||||||||||||
Sbjct: 1721 agcggtggctcgagtgcgtc 1702
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    agcgcgacgacgtcaagcgc 287
              ||||||||||||||||||||
Sbjct: 627732 agcgcgacgacgtcaagcgc 627751
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>ref|XM_341782.2| PREDICTED: Rattus norvegicus EPS8-like 1 (predicted)
            (Eps8l1_predicted), mRNA
          Length = 2514

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  ccaggcgcgcctgcagctcc 417
            ||||||||||||||||||||
Sbjct: 1866 ccaggcgcgcctgcagctcc 1847
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 398    ccaggcgcgcctgcagctcccgcc 421
              |||||||||||||| |||||||||
Sbjct: 358697 ccaggcgcgcctgctgctcccgcc 358720
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>gb|AF148553.1|AF148553 Thiobacillus denitrificans hypothetical protein (era) gene, partial
           cds; and adenylylsulfate:phosphate adenylyltransferase
           (apt) gene, complete cds
          Length = 2977

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 agcgcgacgacgtcaagcgc 287
           ||||||||||||||||||||
Sbjct: 345 agcgcgacgacgtcaagcgc 364
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     gcgactacatcgacgcgctg 239
               ||||||||||||||||||||
Sbjct: 4536073 gcgactacatcgacgcgctg 4536092
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>emb|AL837521.6| Mouse DNA sequence from clone RP23-28I8 on chromosome 4, complete
              sequence
          Length = 230493

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tggcagatcaaatccaggca 92
              ||||||||||||||||||||
Sbjct: 191067 tggcagatcaaatccaggca 191048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,830,593
Number of Sequences: 3902068
Number of extensions: 2830593
Number of successful extensions: 59446
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58718
Number of HSP's gapped (non-prelim): 728
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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