ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05b11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK106730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H09, full insert sequence Length = 1999 Score = 226 bits (114), Expect = 5e-56 Identities = 303/366 (82%) Strand = Plus / Plus Query: 126 ccggagcttcccgcggaggaggagatggcgctcatccgagatatcaccgccgcggcggag 185 |||||| | |||||||||||||||| |||||| ||||| || ||||||| ||| || ||| Sbjct: 288 ccggaggtgcccgcggaggaggagagggcgctgatccgggacatcaccgtcgccgccgag 347 Query: 186 gcccacgccaaggagggtgacattttcttcctcatcacaaacaggtggtggcagagttgg 245 |||||||||||||| || |||| |||||||||||||| ||||||||||||| |||||| Sbjct: 348 gcccacgccaaggaaggggacaccttcttcctcatcacccacaggtggtggcaaagttgg 407 Query: 246 attgattatgttattcaggattcggctggtgtaccaagtaatggttctcatcatcatgaa 305 ||||||||||| ||||| |||| |||| | | | | ||||||||||||||||||||| Sbjct: 408 attgattatgtcattcaagatttggctaattcaacgaataatggttctcatcatcatgag 467 Query: 306 ttcggttcaaatactcctagaaggccaggagctattgacaatacaaatttgttggatgac 365 ||||| || || ||||| |||||||| |||||||||||| ||||| | ||||| Sbjct: 468 catggttctaacgttctgagaagaccaggagcaattgacaatacagatttgatagatgat 527 Query: 366 atggcatctgaagtctccgacatgcagattgagctacatgataccttggctgaaggccgt 425 | |||||||||||||| | ||| ||||||| ||||||||||| |||| ||| || ||| Sbjct: 528 actgcatctgaagtctcgaatatggagattgaactacatgatacattggttgagggtcgt 587 Query: 426 gattatatattgctccctcagcaagtctgggaaaagctgcatagttggtatggcggaggg 485 || |||||| |||| || || ||||||||||||||| |||| |||||||||| ||||| Sbjct: 588 gactatatactgcttccccaacaagtctgggaaaagttgcacggttggtatggtggagga 647 Query: 486 ccaaca 491 |||||| Sbjct: 648 ccaaca 653
>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09, complete sequence Length = 171861 Score = 133 bits (67), Expect = 6e-28 Identities = 208/255 (81%) Strand = Plus / Plus Query: 223 caaacaggtggtggcagagttggattgattatgttattcaggattcggctggtgtaccaa 282 |||| ||||||||||| ||||||||||||||||| ||||| |||| |||| | | | | Sbjct: 144509 caaataggtggtggcaaagttggattgattatgtcattcaagatttggctaattcaacga 144568 Query: 283 gtaatggttctcatcatcatgaattcggttcaaatactcctagaaggccaggagctattg 342 ||||||||||||||||||||| ||||| || || ||||| |||||||| |||| Sbjct: 144569 ataatggttctcatcatcatgagcatggttctaacgttctgagaagaccaggagcaattg 144628 Query: 343 acaatacaaatttgttggatgacatggcatctgaagtctccgacatgcagattgagctac 402 |||||||| ||||| | ||||| | |||||||||||||| | ||| ||||||| |||| Sbjct: 144629 acaatacagatttgatagatgatactgcatctgaagtctcgaatatggagattgaactac 144688 Query: 403 atgataccttggctgaaggccgtgattatatattgctccctcagcaagtctgggaaaagc 462 ||||||| |||| ||| || ||||| |||||| |||| || || ||||||||||||||| Sbjct: 144689 atgatacattggttgagggtcgtgactatatactgcttccccaacaagtctgggaaaagt 144748 Query: 463 tgcatagttggtatg 477 |||| ||||||||| Sbjct: 144749 tgcacggttggtatg 144763 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 126 ccggagcttcccgcggaggaggagatggcgctcatccgagatatcaccgccgcggcggag 185 |||||| | |||||||||||||||| |||||| ||||| || ||||||| ||| || ||| Sbjct: 143225 ccggaggtgcccgcggaggaggagagggcgctgatccgggacatcaccgtcgccgccgag 143284 Query: 186 gcccacgccaaggagggtgacattttcttcctcatcac 223 |||||||||||||| || |||| |||||||||||||| Sbjct: 143285 gcccacgccaaggaaggggacaccttcttcctcatcac 143322
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 6e-28 Identities = 208/255 (81%) Strand = Plus / Plus Query: 223 caaacaggtggtggcagagttggattgattatgttattcaggattcggctggtgtaccaa 282 |||| ||||||||||| ||||||||||||||||| ||||| |||| |||| | | | | Sbjct: 15734828 caaataggtggtggcaaagttggattgattatgtcattcaagatttggctaattcaacga 15734887 Query: 283 gtaatggttctcatcatcatgaattcggttcaaatactcctagaaggccaggagctattg 342 ||||||||||||||||||||| ||||| || || ||||| |||||||| |||| Sbjct: 15734888 ataatggttctcatcatcatgagcatggttctaacgttctgagaagaccaggagcaattg 15734947 Query: 343 acaatacaaatttgttggatgacatggcatctgaagtctccgacatgcagattgagctac 402 |||||||| ||||| | ||||| | |||||||||||||| | ||| ||||||| |||| Sbjct: 15734948 acaatacagatttgatagatgatactgcatctgaagtctcgaatatggagattgaactac 15735007 Query: 403 atgataccttggctgaaggccgtgattatatattgctccctcagcaagtctgggaaaagc 462 ||||||| |||| ||| || ||||| |||||| |||| || || ||||||||||||||| Sbjct: 15735008 atgatacattggttgagggtcgtgactatatactgcttccccaacaagtctgggaaaagt 15735067 Query: 463 tgcatagttggtatg 477 |||| ||||||||| Sbjct: 15735068 tgcacggttggtatg 15735082 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 126 ccggagcttcccgcggaggaggagatggcgctcatccgagatatcaccgccgcggcggag 185 |||||| | |||||||||||||||| |||||| ||||| || ||||||| ||| || ||| Sbjct: 15733544 ccggaggtgcccgcggaggaggagagggcgctgatccgggacatcaccgtcgccgccgag 15733603 Query: 186 gcccacgccaaggagggtgacattttcttcctcatcac 223 |||||||||||||| || |||| |||||||||||||| Sbjct: 15733604 gcccacgccaaggaaggggacaccttcttcctcatcac 15733641
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 6e-28 Identities = 208/255 (81%) Strand = Plus / Plus Query: 223 caaacaggtggtggcagagttggattgattatgttattcaggattcggctggtgtaccaa 282 |||| ||||||||||| ||||||||||||||||| ||||| |||| |||| | | | | Sbjct: 15822205 caaataggtggtggcaaagttggattgattatgtcattcaagatttggctaattcaacga 15822264 Query: 283 gtaatggttctcatcatcatgaattcggttcaaatactcctagaaggccaggagctattg 342 ||||||||||||||||||||| ||||| || || ||||| |||||||| |||| Sbjct: 15822265 ataatggttctcatcatcatgagcatggttctaacgttctgagaagaccaggagcaattg 15822324 Query: 343 acaatacaaatttgttggatgacatggcatctgaagtctccgacatgcagattgagctac 402 |||||||| ||||| | ||||| | |||||||||||||| | ||| ||||||| |||| Sbjct: 15822325 acaatacagatttgatagatgatactgcatctgaagtctcgaatatggagattgaactac 15822384 Query: 403 atgataccttggctgaaggccgtgattatatattgctccctcagcaagtctgggaaaagc 462 ||||||| |||| ||| || ||||| |||||| |||| || || ||||||||||||||| Sbjct: 15822385 atgatacattggttgagggtcgtgactatatactgcttccccaacaagtctgggaaaagt 15822444 Query: 463 tgcatagttggtatg 477 |||| ||||||||| Sbjct: 15822445 tgcacggttggtatg 15822459 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Plus Query: 126 ccggagcttcccgcggaggaggagatggcgctcatccgagatatcaccgccgcggcggag 185 |||||| | |||||||||||||||| |||||| ||||| || ||||||| ||| || ||| Sbjct: 15820921 ccggaggtgcccgcggaggaggagagggcgctgatccgggacatcaccgtcgccgccgag 15820980 Query: 186 gcccacgccaaggagggtgacattttcttcctcatcac 223 |||||||||||||| || |||| |||||||||||||| Sbjct: 15820981 gcccacgccaaggaaggggacaccttcttcctcatcac 15821018
>gb|AC069287.7| Homo sapiens BAC clone RP11-304M2 from 11, complete sequence Length = 199487 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 54 aacccaaccctaaccctagccc 75 |||||||||||||||||||||| Sbjct: 84015 aacccaaccctaaccctagccc 83994 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 54 aacccaaccctaaccctagccc 75 |||||||||||||||||||||| Sbjct: 83814 aacccaaccctaaccctagccc 83793 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 54 aacccaaccctaaccctagccc 75 |||||||||||||||||||||| Sbjct: 83710 aacccaaccctaaccctagccc 83689
>ref|XM_630566.1| Dictyostelium discoideum hypothetical protein (DDB0188963), partial mRNA Length = 2154 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 caagtaatggttctcatcatc 300 ||||||||||||||||||||| Sbjct: 113 caagtaatggttctcatcatc 133
>gb|AF034925.4| Leishmania major MEKK-related kinase (MRK1) gene, complete cds Length = 4289 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 cccgcggaggaggagatggcg 155 ||||||||||||||||||||| Sbjct: 2774 cccgcggaggaggagatggcg 2794
>gb|AC122806.4| Mus musculus BAC clone RP23-297C11 from 8, complete sequence Length = 184206 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 tgacattttcttcctcatcac 223 ||||||||||||||||||||| Sbjct: 73756 tgacattttcttcctcatcac 73776
>gb|AC171181.3| Pan troglodytes BAC clone CH251-214F24 from chromosome unknown, complete sequence Length = 165414 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 450 gtctgggaaaagctgcatagttggt 474 |||||||||||||||||||| |||| Sbjct: 97525 gtctgggaaaagctgcataggtggt 97549
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 gctcctcgccggcgtcggcga 99 ||||||||||||||||||||| Sbjct: 180906 gctcctcgccggcgtcggcga 180926
>emb|AL353648.27| Human DNA sequence from clone RP11-550P23 on chromosome 13 Contains the HMGB1 gene for high mobility group box 1 (HMG1 HMG3), a novel gene, a novel pseudogene, a microfibrillar-associated protein 1 (MFAP1) pseudogene, a protein tyrosine phosphatase, non-receptor type 2 (PTPN2) pseudogene and a CpG island, complete sequence Length = 133867 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 450 gtctgggaaaagctgcatagttggt 474 |||||||||||||||||||| |||| Sbjct: 74731 gtctgggaaaagctgcataggtggt 74755
>gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, complete sequence Length = 219357 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 aacccaaccctaaccctagcccaga 78 ||||||||||||||||||| ||||| Sbjct: 96761 aacccaaccctaaccctagaccaga 96785
>gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, complete sequence Length = 155839 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 caatacaaatttgttggatga 364 ||||||||||||||||||||| Sbjct: 98082 caatacaaatttgttggatga 98062
>gb|AC107882.3| Homo sapiens chromosome 11, clone CTD-2019O4, complete sequence Length = 130916 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 280 caagtaatggttctcatcatcatga 304 ||||||| ||||||||||||||||| Sbjct: 56316 caagtaaaggttctcatcatcatga 56340
>gb|AC107886.2| Homo sapiens chromosome 11, clone CTD-3064C13, complete sequence Length = 133892 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 caagtaatggttctcatcatcatga 304 ||||||| ||||||||||||||||| Sbjct: 14763 caagtaaaggttctcatcatcatga 14739
>gb|AF012100.2|AF012100 Pseudomonas aeruginosa PtxR (ptxR) and PtxS (ptxS) genes, complete cds and ketogluconate utilization operon gene, complete sequence Length = 7447 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tcaccgccgcggcggaggccc 189 ||||||||||||||||||||| Sbjct: 1503 tcaccgccgcggcggaggccc 1483
>gb|AC112718.3| Homo sapiens BAC clone RP11-621K3 from 2, complete sequence Length = 37977 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 attgctccctcagcaagtctg 454 ||||||||||||||||||||| Sbjct: 20348 attgctccctcagcaagtctg 20368
>gb|AE004651.1| Pseudomonas aeruginosa PAO1, section 212 of 529 of the complete genome Length = 10728 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tcaccgccgcggcggaggccc 189 ||||||||||||||||||||| Sbjct: 8996 tcaccgccgcggcggaggccc 8976
>gb|AC091887.3| Homo sapiens chromosome 5 clone RP11-118M9, complete sequence Length = 171095 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 caatacaaatttgttggatga 364 ||||||||||||||||||||| Sbjct: 169433 caatacaaatttgttggatga 169453
>gb|AC154327.2| Mus musculus BAC clone RP23-289N10 from 14, complete sequence Length = 161835 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 tcctcatcacaaacaggtggtggca 238 ||||||||| ||||||||||||||| Sbjct: 44042 tcctcatcagaaacaggtggtggca 44018
>gb|AF002222.1|AF002222 Pseudomonas aeruginosa pyoverdine chromophore biosynthesis gene cluster including PvcA (pvcA), PvcB (pvcB), PvcC (pvcC), and PvcD (pvcD) genes, complete cds, and transcriptional activator PtxR (ptxR) gene, complete cds Length = 6397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tcaccgccgcggcggaggccc 189 ||||||||||||||||||||| Sbjct: 5978 tcaccgccgcggcggaggccc 5958
>gb|AC140462.3| Mus musculus BAC clone RP23-13K8 from 14, complete sequence Length = 199933 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 214 tcctcatcacaaacaggtggtggca 238 ||||||||| ||||||||||||||| Sbjct: 3049 tcctcatcagaaacaggtggtggca 3073
>emb|CR974443.6| M.truncatula DNA sequence from clone MTH2-35O18 on chromosome 3, complete sequence Length = 115456 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 tattgacaatacaaatttgtt 358 ||||||||||||||||||||| Sbjct: 100769 tattgacaatacaaatttgtt 100749
>gb|AC164555.2| Mus musculus BAC clone RP23-346G13 from chromosome 17, complete sequence Length = 211631 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ggccaggagctattgacaat 347 |||||||||||||||||||| Sbjct: 169806 ggccaggagctattgacaat 169787
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 61868 cccaaccctaaccctagccc 61849
>gb|AC165327.4| Mus musculus chromosome 19, clone RP24-318N5, complete sequence Length = 191038 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 37878 cccaaccctaaccctagccc 37897
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 27117023 cccaaccctaaccctagccc 27117042
>gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome 3, complete sequence Length = 214712 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 11753 cccaaccctaaccctagccc 11734
>gb|AC131113.4| Mus musculus BAC clone RP24-155C13 from chromosome 3, complete sequence Length = 173268 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 26745 cccaaccctaaccctagccc 26764
>gb|DQ334060.1| Drosophila miranda CG10732 gene, partial cds Length = 1125 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagtcggagccggcaccgga 130 |||||||||||||||||||| Sbjct: 298 gagtcggagccggcaccgga 279
>emb|AJ544897.1|TNI544897 Tetraodon nigroviridis tf2 gene for tissue factor 2, exons 1-7 Length = 8747 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 5666 cccaaccctaaccctagccc 5647 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 5439 cccaaccctaaccctagccc 5458 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 5343 cccaaccctaaccctagccc 5324
>gb|BC035098.1| Homo sapiens cDNA clone IMAGE:5261953 Length = 2257 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 1468 cccaaccctaaccctagccc 1487
>gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence Length = 185590 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 89578 cccaaccctaaccctagccc 89559
>gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complete sequence Length = 79804 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 39172 cccaaccctaaccctagccc 39191
>emb|BX323560.16| Zebrafish DNA sequence from clone DKEY-265E15 in linkage group 4, complete sequence Length = 190574 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 catgaattcggttcaaatac 319 |||||||||||||||||||| Sbjct: 33292 catgaattcggttcaaatac 33311
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 27208346 cccaaccctaaccctagccc 27208365
>emb|AL596139.1|CNS07EGR BAC A of library A from Tetraodon nigroviridis, T-cell receptor alpha delta locus (germline) Length = 74861 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 26596 cccaaccctaaccctagccc 26615
>gb|AC154260.2| Mus musculus BAC clone RP24-225C5 from 17, complete sequence Length = 187652 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ggccaggagctattgacaat 347 |||||||||||||||||||| Sbjct: 166304 ggccaggagctattgacaat 166323
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 agctcctcgccggcgtcggc 97 |||||||||||||||||||| Sbjct: 2479242 agctcctcgccggcgtcggc 2479261
>gb|AF037030.1|AF037030 Zea mays 6-phosphogluconate dehydrogenase isoenzyme B mRNA, partial cds Length = 634 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ggaggaggagatggcgctca 159 |||||||||||||||||||| Sbjct: 90 ggaggaggagatggcgctca 109
>emb|AJ628955.2| Streptomyces rimosus subsp. paromomycinus genomic region of the paromomycin biosynthesis gene cluster, strain NRRL 2455 Length = 48169 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctcgccggcgtcggcgatgg 102 |||||||||||||||||||| Sbjct: 45520 ctcgccggcgtcggcgatgg 45501
>emb|AL645987.7| Mouse DNA sequence from clone RP23-27B20 on chromosome 11 Contains a eukaryotic translation initiation factor 3, subunit 2 (beta) (Eif3s2) pseudogene, a novel protein (MOR256-1) similar to the olfactory receptor family and a novel protein (MOR256-28) similar to the olfactory receptor family, complete sequence Length = 99868 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cccaaccctaaccctagccc 75 |||||||||||||||||||| Sbjct: 62767 cccaaccctaaccctagccc 62748
>emb|X87512.1|HSNL197D H.sapiens genomic DNA (chromosome 3; clone NL197D) Length = 327 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gccgcggcggaggcccacgc 193 |||||||||||||||||||| Sbjct: 4 gccgcggcggaggcccacgc 23 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,307,322 Number of Sequences: 3902068 Number of extensions: 4307322 Number of successful extensions: 89475 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89011 Number of HSP's gapped (non-prelim): 464 length of query: 491 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 469 effective length of database: 17,147,199,772 effective search space: 8042036693068 effective search space used: 8042036693068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
