ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl05d11 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex| component Sec8) Length = 1053 Score = 205 bits (521), Expect = 6e-53 Identities = 98/132 (74%), Positives = 115/132 (87%) Frame = +1 Query: 79 GIFDGLPIPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLI 258 GIF+GLP+P DK+YL+E L+RIDE WAAARFDSLPHVVHILTSKDR+ +I LKEQSD++ Sbjct: 2 GIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDVV 61 Query: 259 EDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEMAEAKKLLGRKNQHLGQL 438 E+VVDEVVHAYH GFNKAIQNYS ILRLFSES E I LK ++AEAK+ LG +N+ L QL Sbjct: 62 EEVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNKQLHQL 121 Query: 439 WYRSLTLRHVIS 474 WYRS+TLRH+IS Sbjct: 122 WYRSVTLRHIIS 133
>EXOC4_RAT (Q62824) Exocyst complex component 4 (Exocyst complex component| Sec8) (rSec8) Length = 975 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/89 (25%), Positives = 42/89 (47%) Frame = +1 Query: 208 KDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEM 387 +DR+ E L+E + + +DE++ ++ AI+ Y I + S I +K + Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97 Query: 388 AEAKKLLGRKNQHLGQLWYRSLTLRHVIS 474 K LL K L +LW + +HV++ Sbjct: 98 LSCKMLLHCKRDELRKLWIEGIEHKHVLN 126
>EXOC4_MOUSE (O35382) Exocyst complex component 4 (Exocyst complex component| Sec8) Length = 975 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/89 (25%), Positives = 42/89 (47%) Frame = +1 Query: 208 KDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEM 387 +DR+ E L+E + + +DE++ ++ AI+ Y I + S I +K + Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97 Query: 388 AEAKKLLGRKNQHLGQLWYRSLTLRHVIS 474 K LL K L +LW + +HV++ Sbjct: 98 LSCKMLLHCKRDELRKLWIEGIEHKHVLN 126
>EXOC4_HUMAN (Q96A65) Exocyst complex component 4 (Exocyst complex component| Sec8) Length = 974 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/89 (25%), Positives = 42/89 (47%) Frame = +1 Query: 208 KDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEM 387 +DR+ E L+E + + +DE++ ++ AI+ Y I + S I +K + Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97 Query: 388 AEAKKLLGRKNQHLGQLWYRSLTLRHVIS 474 K LL K L +LW + +HV++ Sbjct: 98 LSCKMLLHCKRDELRKLWIEGIEHKHVLN 126
>SEC8_NEUCR (Q9HE88) Probable exocyst complex component sec8| Length = 1111 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/79 (26%), Positives = 37/79 (46%) Frame = +1 Query: 202 TSKDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKG 381 +S R E + ++ +++ + +VH +H GFN +I + I S + + LK Sbjct: 115 SSVGRAHEYRNFQQTHQFLQESLKNIVHDHHQGFNSSIGTFHKIQGSIQSSQKKVRALKE 174 Query: 382 EMAEAKKLLGRKNQHLGQL 438 +A +K L N L QL Sbjct: 175 SLAASKTALCTTNPELKQL 193
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 32.0 bits (71), Expect = 0.83 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 2000 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2038
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 32.0 bits (71), Expect = 0.83 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 1997 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2035
>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)| Length = 489 Score = 31.2 bits (69), Expect = 1.4 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 12/90 (13%) Frame = +1 Query: 25 RLSPGPASPSVTMNRHRRGIFDGLP-------IPPD---KSYLKEGLSRIDEGWAAARFD 174 ++SP P PS++M R I+ LP + P KS +S++ + F Sbjct: 83 KVSPRPTPPSLSMRRSEASIYT-LPTSLKNRTVSPSVYTKSSTVSSISKLSSSSPLSSFS 141 Query: 175 SLPHV--VHILTSKDRDGEIQFLKEQSDLI 258 PH+ VH L+ K +D +++ ++ +S I Sbjct: 142 EKPHLNRVHSLSVKTKDLKLKGIRGRSQTI 171
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP +R PP A ++LP Sbjct: 1998 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2036
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP +R PP A ++LP Sbjct: 2001 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2039
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = +3 Query: 12 SPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 164 S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 895 SAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = +3 Query: 12 SPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 164 S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 895 SAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>LAMB3_HUMAN (Q13751) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Laminin| B1k chain) (Kalinin B1 chain) Length = 1172 Score = 30.4 bits (67), Expect = 2.4 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 14/136 (10%) Frame = +1 Query: 100 IPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRD--------GEIQFLKEQSDL 255 +P D + + + ++ I AAR LP+V +L+ +D E + + ++ Sbjct: 921 LPTDSATVLQKMNEIQA--IAAR---LPNVDLVLSQTKQDIARARRLQAEAEEARSRAHA 975 Query: 256 IEDVVDEVVHAYHHGF------NKAIQNYSHILRLFSESAESITGLKGEMAEAKKLLGRK 417 +E V++VV G +Q S LRL + + + + A+KL+ Sbjct: 976 VEGQVEDVVGNLRQGTVALQEAQDTMQGTSRSLRLIQDRVAEVQQV---LRPAEKLVTSM 1032 Query: 418 NQHLGQLWYRSLTLRH 465 + LG W R LRH Sbjct: 1033 TKQLGDFWTRMEELRH 1048
>FA84A_BOVIN (Q3ZCA1) Protein FAM84A| Length = 297 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +1 Query: 91 GLPIPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLIED 264 G P + YLK L+ D ARF SL ++ D G ++ L+E +DL++D Sbjct: 240 GTQPPQQQYYLKVHLA--DNKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD 295
>VGLC_BHV1C (P14378) Glycoprotein GIII precursor| Length = 521 Score = 30.0 bits (66), Expect = 3.2 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Frame = +3 Query: 3 SPVSPDLAP---LPGSRLAVGNDEPP-------PAWHLRRPPNSARQILPEGRAVADRRG 152 +P SPD P PG+ VG EPP P + PP P G A R G Sbjct: 57 TPNSPDATPEDSTPGATTPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNASRDG 116 Query: 153 MGSG 164 SG Sbjct: 117 RPSG 120
>VATE_SULSO (Q9UWW5) V-type ATP synthase subunit E (EC 3.6.3.14) (V-type ATPase| subunit E) Length = 194 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = +1 Query: 268 VDEVVHAYHHGFNKAIQNYS-HILRLFSESAESITGLKG--EMAEAKKLLGRKNQHLGQL 438 +DE + + G NK +Q YS I L ++ E I G K E+ + LL K + ++ Sbjct: 26 LDEAIKLLNEGHNKIVQEYSQRINELIVKTKEEIEGEKARLEVENKRTLLVEKEYWINKV 85 Query: 439 WYRSL 453 + R L Sbjct: 86 YERVL 90
>YAYB_SCHPO (Q10218) Hypothetical protein C4H3.11c in chromosome I| Length = 783 Score = 29.3 bits (64), Expect = 5.4 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = +1 Query: 124 KEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGE-IQFLKEQSDLIEDVVDEVVHAYHHG 300 K G S +D+G AA+R+D+ + K+R E ++ L+EQ + I+ V V+ Sbjct: 349 KLGESNVDDGMAASRYDT------VKREKERLSEHLKSLQEQYEHIQSVYKNVL------ 396 Query: 301 FNKAIQNYSHILRLFSESAESITGLKGEMAEAKKLLGRKNQ 423 + S+I+RL ++ +E+ E+ ++L K Q Sbjct: 397 ----LDRESYIMRLGNKISEN-----NELLNENRVLKEKLQ 428
>REB1_KLULA (Q05950) DNA-binding protein REB1 (QBP)| Length = 595 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +1 Query: 112 KSYLKEGLSRIDEGWAAARFDSLPHVVHIL----TSKDRDGEIQFLKEQSDLIEDVVD 273 ++Y+K G +R W+ + L +V+H + ++ DGE +K+ S IED D Sbjct: 379 RNYVKCGPNRAANKWSVEEEEKLKNVIHQMLDNASTAYEDGEDDEMKDSSTKIEDSGD 436
>DNAK1_SYNPX (Q7U6R7) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 662 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -2 Query: 150 LVDPRQPFLQV-RFVWRNWEAVEDATPVAVHRYRRRGGTRGEAR 22 ++ PR F + RFV R+WE +ED++ +AV Y R RG+ R Sbjct: 59 VLSPRNTFSNLKRFVGRDWEELEDSS-LAV-PYTVRANDRGQVR 100
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = -1 Query: 151 PRRSATALPSGKICLAELGGRRRCHAGGG-----SSLPTARRDPGRGAR 20 PRRS P+G + E GG R C G G + P++ D G A+ Sbjct: 2518 PRRSPGP-PAGGVSCPEKGGNRACPGGSGPKTSAAETPSSASDTGEAAQ 2565
>GCSH_PEA (P16048) Glycine cleavage system H protein, mitochondrial precursor| Length = 165 Score = 28.5 bits (62), Expect = 9.2 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Frame = +1 Query: 4 AQSLQISRLSPGPASPSVTMNRHRRGIFDGLPIPPDKSYLKEGLSRIDEGWAAARFDSLP 183 A +L++S S SP+ +++R + DGL P ++K S G D L Sbjct: 11 ANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLG 70 Query: 184 HVVHI--------LTSKDRDGEIQFLKEQSDLIEDVVDEVV 282 VV + +T G ++ +K SD+ + EV+ Sbjct: 71 EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVI 111
>CD123_YEAST (Q05791) Cell division cycle protein 123| Length = 360 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 193 HILTSKDRD-GEIQFLKEQSDLIEDVVDEVVH 285 HI+ + RD +L E SD +D++DE+VH Sbjct: 206 HIVGATQRDLNYYDYLDELSDTFKDLIDEIVH 237
>XYLA_BACHD (Q9K993) Xylose isomerase (EC 5.3.1.5)| Length = 440 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = +1 Query: 253 LIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEMAEAKKLLGRKNQHL 429 ++EDV+D +Y G + I N L+ A S+ +K + +++ NQ+L Sbjct: 376 VLEDVIDNRYKSYQSGIGQKIANNDTNLKELEAYALSLGEIKHSSGQQERIKATLNQYL 434 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,895,074 Number of Sequences: 219361 Number of extensions: 1320180 Number of successful extensions: 5176 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5170 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
