ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl06c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2162_ARATH (O22224) Protein At2g41620 176 2e-44
2NUP93_XENLA (Q7ZX96) Nuclear pore complex protein Nup93 (Nucleop... 58 5e-09
3NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleop... 57 8e-09
4NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleop... 55 3e-08
5NUP93_HUMAN (Q8N1F7) Nuclear pore complex protein Nup93 (Nucleop... 55 3e-08
6NP106_SCHPO (O14310) Nucleoporin npp106 (Nuclear pore protein np... 35 0.033
7ARGC_CORGL (Q59279) N-acetyl-gamma-glutamyl-phosphate reductase ... 33 0.16
8TSKS_HUMAN (Q9UJT2) Testis-specific serine kinase substrate (Tes... 32 0.48
9UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor 31 0.82
10UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (E... 31 0.82
11DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360 30 1.1
12AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-al... 30 1.4
13YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A... 29 2.4
14PHZI_PSEFL (Q51785) Autoinducer synthesis protein phzI 28 4.1
15DNAS1_CHICK (Q9YGI5) Deoxyribonuclease-1 precursor (EC 3.1.21.1)... 28 4.1
16ILVH_MYCLE (O33113) Acetolactate synthase small subunit (EC 2.2.... 28 4.1
17SYC_HALSA (Q9HQL9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 28 5.3
18PDXT_METAC (Q8TQH7) Glutamine amidotransferase subunit pdxT (EC ... 28 5.3
19BGAL_STRTR (P23989) Beta-galactosidase (EC 3.2.1.23) (Lactase) 28 6.9
20PDXT_METMA (Q8PUA4) Glutamine amidotransferase subunit pdxT (EC ... 28 6.9
21YKM1_SCHPO (Q9C0Z1) Putative transcriptional regulatory protein ... 27 9.0
22METK_WOLSU (Q7M7Z2) S-adenosylmethionine synthetase (EC 2.5.1.6)... 27 9.0
23FAF_DROME (P55824) Probable ubiquitin carboxyl-terminal hydrolas... 27 9.0
24SYE_LACLA (Q9CDZ7) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 27 9.0
25RPOA1_METTH (O27125) DNA-directed RNA polymerase subunit A' (EC ... 27 9.0
26ISPF_PORGI (Q7MXX0) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate... 27 9.0
27FABH2_BACAN (Q81JF6) 3-oxoacyl-[acyl-carrier-protein] synthase 3... 27 9.0
28RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2... 27 9.0

>Y2162_ARATH (O22224) Protein At2g41620|
          Length = 861

 Score =  176 bits (445), Expect = 2e-44
 Identities = 89/113 (78%), Positives = 104/113 (92%)
 Frame = +1

Query: 55  WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAR 234
           W++LL++S+KLLEQAA +  FP LQRNLDQLE LS KLKAKT+R EAPSQS++ATRLLAR
Sbjct: 10  WTDLLHSSSKLLEQAAPSSQFPPLQRNLDQLEALSKKLKAKTLRNEAPSQSIAATRLLAR 69

Query: 235 EGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393
           EGINAEQL RDLKSFELKTTFEDVFP+EATSVEEYLQQ+HEMA+VS+IQE ++
Sbjct: 70  EGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEAQK 122



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>NUP93_XENLA (Q7ZX96) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93|
           kDa nucleoporin) (An4a)
          Length = 820

 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 30/114 (26%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
 Frame = +1

Query: 55  WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231
           + ELL  + +L  +       P ++RNL +++    +L++KT+ R    S ++ A+ LL 
Sbjct: 6   FGELLQQAEQLAAETEGVTELPHVERNLQEIQQAGERLRSKTMTRTSQESANVKASVLLG 65

Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393
             G++   +++ L+S    TTFE + P + T ++ +L+   + A++S+I+E ++
Sbjct: 66  SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119



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>NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93|
           kDa nucleoporin) (Dead eye protein)
          Length = 820

 Score = 57.4 bits (137), Expect = 8e-09
 Identities = 29/114 (25%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +1

Query: 55  WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231
           + ELL  + +L  +       P ++RNL +++    +L+++T+ R    +  + A+ LL 
Sbjct: 6   FGELLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDTADVKASILLG 65

Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393
             G++   +++ L+S    TTFE + P + T ++ +L+   + A++S+I+E +R
Sbjct: 66  SRGLDIFHISQRLESLSAATTFEPLEPVKDTDIQGFLKNERDNALLSAIEESRR 119



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>NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93|
           kDa nucleoporin) (CBP-interacting protein 4)
          Length = 819

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +1

Query: 55  WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231
           + ELL  + +L  +       P ++RNL +++    +L+++T+ R    +  + A+ LL 
Sbjct: 6   FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65

Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393
             G++   +++ L+S    TTFE + P + T ++ +L+   + A++S+I+E ++
Sbjct: 66  SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119



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>NUP93_HUMAN (Q8N1F7) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93|
           kDa nucleoporin)
          Length = 819

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +1

Query: 55  WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 231
           + ELL  + +L  +       P ++RNL +++    +L+++T+ R    +  + A+ LL 
Sbjct: 6   FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65

Query: 232 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQEHKR 393
             G++   +++ L+S    TTFE + P + T ++ +L+   + A++S+I+E ++
Sbjct: 66  SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRK 119



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>NP106_SCHPO (O14310) Nucleoporin npp106 (Nuclear pore protein npp106)|
          Length = 933

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +1

Query: 103 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 282
           L P  P +Q  L+QLE  +  L++K +          A  LLA  G+NAEQ  + + S  
Sbjct: 40  LEPQVPVIQYGLNQLEEKARNLESKVLLTR--DGDTKAHYLLAESGMNAEQTRQKIYSIH 97

Query: 283 LKTTFEDVFPSEATSVEEYLQQLHE-MAIVSSIQ 381
           + + ++ +   + +  E+   +L+    +V+SI+
Sbjct: 98  IHSPWDQLELDKKSLYEQPHTKLYNGQNVVASIE 131



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>ARGC_CORGL (Q59279) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 347

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +1

Query: 112 HFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKT 291
           H P + +NL ++     K+    + A  P   L+      +EG+ AEQ     + F  + 
Sbjct: 212 HTPEIAQNLGEVSDKPVKVSFTPVLAPLPRGILTTATAPLKEGVTAEQARAVYEEFYAQE 271

Query: 292 TFEDVFPSEA 321
           TF  V P  A
Sbjct: 272 TFVHVLPEGA 281



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>TSKS_HUMAN (Q9UJT2) Testis-specific serine kinase substrate (Testis-specific|
           kinase substrate) (STK22 substrate 1)
          Length = 592

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +1

Query: 88  LEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQ--LT 261
           ++Q  LTP  P+ QR   ++  L  +  AK +RAEA S +L   RL   E + A+   LT
Sbjct: 479 VKQRGLTPACPSCQRLHKKILELERQALAKHVRAEALSSTL---RLAQDEALRAKNLLLT 535

Query: 262 RDLKSFELKTTFEDVFPSEATSVEEYLQQL 351
             +K  E   T  D    +  S+ ++L  L
Sbjct: 536 DKMKPEEKMATL-DHLHLKMCSLHDHLSNL 564



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>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor|
          Length = 2316

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 27/109 (24%), Positives = 49/109 (44%)
 Frame = +1

Query: 58   SELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLARE 237
            SE ++ S  L E  +++        ++ + E LST     T  + + S+SLSA+  L+  
Sbjct: 1846 SESISASESLSESESISA-----SESISESESLSTSESLSTSESLSESESLSASESLSES 1900

Query: 238  GINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIVSSIQE 384
               +E  +  L   E  +  E +  SE+ S  E L +   ++   S+ E
Sbjct: 1901 ESLSE--SESLSESESLSESESLSASESLSASESLSESESLSESESLSE 1947



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>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 24)
           (Ubiquitin-specific-processing protease 24)
           (Deubiquitinating enzyme 24)
          Length = 1870

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = +1

Query: 103 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 282
           L P  PA+Q  LDQL+ L  K   KT+ +E+ SQS  +  L      +++Q  +   S  
Sbjct: 357 LIPTDPAIQEALDQLDSLGRK---KTLLSESSSQSSKSPSL------SSKQQHQPSASSI 407

Query: 283 LKTTFEDVFPSEATSVEEYLQQLHEMAIVSS 375
           L++ F    P  +T      + L+ + ++SS
Sbjct: 408 LESLFRSFAPGMST-----FRVLYNLEVLSS 433



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>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360|
          Length = 884

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +1

Query: 136 LDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPS 315
           L+ LE+L+T +  +  +  +  + LS +RLL   G +   L R L+S  + T     F  
Sbjct: 663 LEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQI 722

Query: 316 EATSVEE 336
           ++ S+ E
Sbjct: 723 KSCSISE 729



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>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 241 SPRAPATWWRRATVTAPRRGSSWP 170
           SPRA    W+R+T   P R S WP
Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWP 215



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>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic|
           region
          Length = 551

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/75 (32%), Positives = 41/75 (54%)
 Frame = -2

Query: 368 TIAIS*SCCRYSSTEVASDGKTSSKVVLSSNDLRSLVSCSALIPSRASNLVAESDCDGAS 189
           ++ +S S    SS+EV S   +SS  +  S+   +++S S+ +P+     VA +    AS
Sbjct: 107 SMQVSSSSTSSSSSEVTSSSSSSS--ISPSSSSSTIISSSSSLPTFT---VASTSSTVAS 161

Query: 188 ARIVLALSLVESTSS 144
           + +  + SLV STSS
Sbjct: 162 STLSTSSSLVISTSS 176



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>PHZI_PSEFL (Q51785) Autoinducer synthesis protein phzI|
          Length = 196

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 299 SKVVLSSNDLRSLVSCSALIPSRASNL---VAESDCDGASAR 183
           ++ +L+ N+ RS+V C+ LIP+   NL   V    C GA  R
Sbjct: 54  ARYLLAFNEHRSIVGCARLIPTTFPNLLEGVFSHACAGAPPR 95



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>DNAS1_CHICK (Q9YGI5) Deoxyribonuclease-1 precursor (EC 3.1.21.1)|
           (Deoxyribonuclease I) (DNase I)
          Length = 282

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 272 LRSLVSCSALIPSRASNLVAESDC 201
           LRSL SC  LIP  A   V  +DC
Sbjct: 206 LRSLSSCEWLIPDSADTTVTSTDC 229



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>ILVH_MYCLE (O33113) Acetolactate synthase small subunit (EC 2.2.1.6) (AHAS)|
           (Acetohydroxy-acid synthase small subunit) (ALS)
          Length = 169

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +1

Query: 190 EAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMAIV 369
           + P        L +R G N E L       +  +    V  +E T +E+  +QLH++  V
Sbjct: 15  DTPGVLARVAALFSRRGFNIESLAVGATECKTMSRMTIVVSAEETPLEQVTKQLHKLINV 74

Query: 370 SSIQEHK 390
             + E +
Sbjct: 75  IKVVEQE 81



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>SYC_HALSA (Q9HQL9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 494

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 211 SATRLLAREGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLQQLHEMA--IVSSIQE 384
           + +  +A  G N  ++     S+  + T+ +   SEAT   E LQ+ HE A   + S+  
Sbjct: 297 TVSNAVAERGPNVVRMLLVSTSYTQRQTYSEATVSEATQRWERLQRAHERAADAIDSVAA 356

Query: 385 HKR 393
           H +
Sbjct: 357 HAK 359



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>PDXT_METAC (Q8TQH7) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)|
           (Glutamine amidotransferase glutaminase subunit pdxT)
          Length = 199

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = +1

Query: 94  QAALTPHFPALQRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 249
           Q A++ H  AL+R L +  +E    ++K K I  E         +S +  RLLAREGI  
Sbjct: 9   QGAVSEHVDALRRALAERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIGE 68

Query: 250 E 252
           E
Sbjct: 69  E 69



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>BGAL_STRTR (P23989) Beta-galactosidase (EC 3.2.1.23) (Lactase)|
          Length = 1026

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = +1

Query: 103 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 282
           LTP    ++     +++   + K+ TI+ +   + LSA   LAR   +  +++     F+
Sbjct: 621 LTPKLQTVKHLYSNIKIAVDE-KSVTIKNDNLFEDLSAYTFLARVYEDGRKVSESEYHFD 679

Query: 283 LKTTFEDVFPSEATSVEEYLQQLHEMAIV 369
           +K   E  FP          +Q++E+A V
Sbjct: 680 VKPGEEATFPVNFVVEASNSEQIYEVACV 708



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>PDXT_METMA (Q8PUA4) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)|
           (Glutamine amidotransferase glutaminase subunit pdxT)
          Length = 199

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = +1

Query: 94  QAALTPHFPALQRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 249
           Q A++ H  AL+R L +  +E    ++K K I  E         +S +  RLLAREGI  
Sbjct: 9   QGAVSEHVDALRRALKERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIAE 68

Query: 250 E 252
           E
Sbjct: 69  E 69



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>YKM1_SCHPO (Q9C0Z1) Putative transcriptional regulatory protein PB24D3.01|
          Length = 594

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +1

Query: 64  LLNTSTKLLEQAALTPHFPALQRNL-DQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREG 240
           LL  S++ L++      FP+L   + D   +++TKLK  + R E PSQ  S   L +   
Sbjct: 104 LLKNSSEPLDRTE-RKDFPSLAMQIRDANSLVNTKLKEYSRRFELPSQKTSFDDLFSSTF 162

Query: 241 INAEQLTRDLKSFELKTTFEDV 306
            N +   +D+   E    FE+V
Sbjct: 163 PNFDAAFKDIPDKE--WAFENV 182



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>METK_WOLSU (Q7M7Z2) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase) (MAT)
          Length = 386

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 230 ASNLVAESDCDGASARIVLALSLVESTS 147
           A NLVA   CD A+ +I  A+ +VE  S
Sbjct: 283 AKNLVASGVCDKATIQIAYAIGVVEPVS 310



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>FAF_DROME (P55824) Probable ubiquitin carboxyl-terminal hydrolase FAF (EC|
           3.1.2.15) (Ubiquitin thioesterase FAF) (Ubiquitin
           specific-processing protease FAF) (Deubiquitinating
           enzyme FAF) (Protein fat facets)
          Length = 2778

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 82  KLLEQAALTPHF-PALQRNLDQLEVLSTKLKAKTIRAEAPSQSLS----ATRLLAREGIN 246
           +LL  A +  +F P     LD L+  + +   + ++ E  +  ++    + RLLA     
Sbjct: 337 ELLMPATIAKYFMPTWNVVLDLLDSFTDEELKREVKPEGRNDYINGIVKSARLLASRLTG 396

Query: 247 AEQLTRDLKSFELK 288
            E+L RDL+ F LK
Sbjct: 397 QEELIRDLEMFRLK 410



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>SYE_LACLA (Q9CDZ7) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 483

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 330 DRSCFRWKNILKGGLEFE*LEVSGE 256
           +++ ++W +I+KG +EFE   + G+
Sbjct: 162 EKAIYKWNDIVKGDIEFEGKNIGGD 186



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>RPOA1_METTH (O27125) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)|
          Length = 870

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 171 GQDDPRRGAVTVALRHQVAGARGDQC 248
           G  DPR G +  +LR +  GA+G +C
Sbjct: 45  GLMDPRLGVIDPSLRCRTCGAKGGEC 70



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>ISPF_PORGI (Q7MXX0) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC|
           4.6.1.12) (MECPS) (MECDP-synthase)
          Length = 162

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 76  STKLLEQAALTPHFPALQRNLD---QLEVLSTKLKAKT 180
           +T   EQ  L PH P +QR L    Q+EV    LKA T
Sbjct: 100 ATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATT 137



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>FABH2_BACAN (Q81JF6) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC|
           2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III
           protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III
           2)
          Length = 327

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 139 DQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFED-VFPS 315
           D+  V  T +K + I +E    S  A + +       ++   D+    + TT  D VFPS
Sbjct: 32  DEWIVQRTGMKERRIASEDEYSSNLAIKAVENLCTTYKKNLEDVDCIIVATTTADYVFPS 91

Query: 316 EATSVEEYLQQLHEMA 363
            A  +++Y    H MA
Sbjct: 92  VACQIQQYFNIPHTMA 107



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>RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1284

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 91   EQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINA 249
            E+  +   F ++  +   LEV +TK  A+ I +E P+ S +A + L  EGI A
Sbjct: 849  ERVIMEDKFTSVHIDEYVLEVRNTKQGAEEITSEIPNISDNAKKYLDNEGIVA 901


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.125    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,041,468
Number of Sequences: 219361
Number of extensions: 614373
Number of successful extensions: 1664
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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