ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl06d12 |
|---|---|
| Clone Library Name | barley_pub |
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 78.2 bits (191), Expect = 5e-15 Identities = 35/42 (83%), Positives = 39/42 (92%) Frame = +3 Query: 96 MDSEDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRL 221 M+ +DF PEGGKLPE KLDARQAQGFISFFKKLP+DPRA+RL Sbjct: 1 MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRL 42
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/33 (72%), Positives = 28/33 (84%) Frame = +3 Query: 120 EGGKLPELKLDARQAQGFISFFKKLPKDPRAIR 218 E KLPELKLDA+QAQGF+SF+K LP D RA+R Sbjct: 7 EQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVR 39
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2813 Score = 32.3 bits (72), Expect = 0.34 Identities = 21/48 (43%), Positives = 28/48 (58%) Frame = +2 Query: 59 SPALPPSTPAGLYGQRRLLAGGGKAPGAQARC*ASPGFHLLLQEVAEG 202 SPAL S+PA G R +GG P Q++ A+PG LL++V EG Sbjct: 194 SPALTRSSPAPGSGYSR--SGGRSTPSTQSQRRAAPGEGGLLKDVLEG 239
>GFI1_HUMAN (Q99684) Zinc finger protein Gfi-1 (Growth factor independence 1)| Length = 422 Score = 31.2 bits (69), Expect = 0.76 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +2 Query: 62 PALPPSTPAGLYGQRRLLAGGGKAPGAQARC*ASPG 169 PA P PA LYG +R A GG GA C A G Sbjct: 157 PAPEPGHPAALYGPKR--AAGGAGAGAPGSCSAGAG 190
>SEM6C_MOUSE (Q9WTM3) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 931 Score = 30.8 bits (68), Expect = 0.99 Identities = 27/74 (36%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Frame = +2 Query: 26 PPAFAHI*PSRSPALPPSTPA-GLYGQRRLLAGGGKAP---------GAQARC*ASPGFH 175 PP PS PAL P G+ G RRL +AP G AR PG H Sbjct: 827 PPEGKRAAPSGRPALSAPAPRLGVGGSRRLPFPTHRAPPGLLTRVPSGGPARYSGGPGRH 886 Query: 176 LLLQEVAEGSSGHS 217 LL EG G S Sbjct: 887 LLYLGRPEGHRGRS 900
>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 930 Score = 30.4 bits (67), Expect = 1.3 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 9/81 (11%) Frame = +2 Query: 2 PLKSLTFPPPAFAHI*PSRSPALPPSTPAGLYGQRRLLAGGGKAP---------GAQARC 154 PL+ L PP P+R P+ G+ G RRL G +AP G +R Sbjct: 817 PLR-LDVPPEGRCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRY 875 Query: 155 *ASPGFHLLLQEVAEGSSGHS 217 PG HLL EG G + Sbjct: 876 SGGPGKHLLYLGRPEGYRGRA 896
>SOX3_HUMAN (P41225) Transcription factor SOX-3| Length = 446 Score = 29.6 bits (65), Expect = 2.2 Identities = 19/61 (31%), Positives = 26/61 (42%) Frame = +2 Query: 5 LKSLTFPPPAFAHI*PSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARC*ASPGFHLLL 184 L SL FPP + AH R P+ P+ GL+ G P A +P + LL Sbjct: 25 LISLPFPPDSLAH----RPPSSAPTESQGLFTVAAPAPGAPSPPATLAHLLPAPAMYSLL 80 Query: 185 Q 187 + Sbjct: 81 E 81
>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1424 Score = 28.9 bits (63), Expect = 3.8 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +2 Query: 26 PPAFAHI*PSRSPALPPSTPAGLYGQRRLLAGGGKA--PGAQ 145 PPAF P +PA P P L G GGG A PGA+ Sbjct: 446 PPAFYGAKPPTAPATPAPGPEPLGGPEPADGGGGGAAGPGAE 487
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 28.5 bits (62), Expect = 4.9 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +2 Query: 50 PSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARC*ASP 166 P+RSP LPP+ L AG G+ P + SP Sbjct: 357 PNRSPCLPPAPEVALPKPVTQAAGSGRCPSPNLQAQESP 395
>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)| (dPKC53E(EY)) (Protein INAC) (Inactivation no after-potential C protein) (Photoreceptor-specific PKC) (Eye-PKC) Length = 700 Score = 28.5 bits (62), Expect = 4.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 68 LPPSTPAGLYGQRRLLAGGGKAPG 139 LPPS P+ G + AG GK PG Sbjct: 14 LPPSVPSAAPGAKAPAAGAGKGPG 37
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 28.1 bits (61), Expect = 6.4 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +2 Query: 23 PPPAFAHI*PSRSPALPPSTPA 88 PPP A P PA PPSTPA Sbjct: 141 PPPPPAGASPLAEPAAPPSTPA 162
>SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 699 Score = 27.7 bits (60), Expect = 8.4 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Frame = +2 Query: 2 PLKSLTFPPPAFAHI*PSRSP---ALPPST 82 P +LT PPPA+A + PS SP A+P S+ Sbjct: 662 PPLALTAPPPAYATLGPSASPLDSAVPGSS 691
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 27.7 bits (60), Expect = 8.4 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Frame = +2 Query: 23 PPPAFAHI*PSR------SPALPPSTPAGLYGQRRLLAGGGKAP 136 PPP H+ PSR SP + PS P YG G G P Sbjct: 92 PPPHRGHLPPSRGFNPPPSPVISPSHPPPSYGAPPPSHGPGHLP 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,159,516 Number of Sequences: 219361 Number of extensions: 548135 Number of successful extensions: 1992 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1986 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
