ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl06h12 |
|---|---|
| Clone Library Name | barley_pub |
>CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)| Length = 378 Score = 33.1 bits (74), Expect = 0.31 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQEERGGMIPA--HAVGSPARGS*QGSKLFFSARASRGGESPRAPP 92 AP +G+P+ R+ GQ GG A G PA G Q + + GG P Sbjct: 183 APAGDGAPAGNRAGGQPAAGGNQAGGNRAGGQPAAGGNQAGGNRAGGQPAAGGNQAGGQP 242 Query: 91 APGXXXXXXXXXXXXXXEQEGG 26 A G Q GG Sbjct: 243 AAGGNQAGAQAGGNQAGAQAGG 264
>NGN2_HUMAN (Q9H2A3) Neurogenin 2| Length = 272 Score = 32.7 bits (73), Expect = 0.40 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -3 Query: 355 VLLNSANPLHSLLNSLIVQVDEQRQ*KNFEAPGYEGSPSHRR--SAGQEERGGMIPAHAV 182 VLL SA+P + L L DE+ + E PG G +R AGQ RGG+ Sbjct: 18 VLLGSASPALAALTPLSSSADEEEE----EEPGASGGARRQRGAEAGQGARGGVAAGAEG 73 Query: 181 GSPAR 167 PAR Sbjct: 74 CRPAR 78
>Y1261_METTH (O27329) Hypothetical UPF0104 protein MTH1261| Length = 338 Score = 31.6 bits (70), Expect = 0.89 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 275 FSLALFVYLDYKAVQKRVQWVSAVKKHAIWAKTHERNARRVLNLMIELE 421 F LAL+V +D A ++ W+ V K + K HER RRV + + E + Sbjct: 165 FFLALYVSVDRDAGERITGWILGVVKR-FYRKNHERLERRVRSALHEFQ 212
>SYK_MYCGA (Q7NC34) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 496 Score = 31.2 bits (69), Expect = 1.2 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 299 LDYKAVQKRVQWVSAVKKHAIWAKTHERNARRVLNLMIE 415 +D+ V+K Q + KKH + K HE+ ++NL E Sbjct: 331 IDFTQVKKIDQALDLAKKHKVHVKEHEKTIGHIINLFFE 369
>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6| Length = 612 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/70 (30%), Positives = 30/70 (42%) Frame = -3 Query: 304 VQVDEQRQ*KNFEAPGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARA 125 VQ + R E PG G+P +A + G +IP + G R QG+ A+ Sbjct: 75 VQAQDPRPGPGTETPGTSGAPGEAEAAECDSEGALIP-QSGGGAKRQQVQGTSSGLDAQ- 132 Query: 124 SRGGESPRAP 95 GE+P P Sbjct: 133 ---GEAPEVP 139
>GLGA_FRATT (Q5NHN2) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 489 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQG 177 W+ +R G A P +H HDW AY A L G Sbjct: 119 WVAARISEGLDAKWKPEIVHSHDWHAGLVPAYIKASELASG 159
>JIP3_DROME (Q9GQF1) JNK-interacting protein 3 (Protein sunday driver)| Length = 1227 Score = 30.8 bits (68), Expect = 1.5 Identities = 22/61 (36%), Positives = 28/61 (45%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAPPAP 86 A G G P R + GG PAH+ GSP+RGS G + A G+ P P + Sbjct: 524 ADGLGGGPMFRHT------GGGSPAHSHGSPSRGSGGGD----NRLALTSGQPPVHPASA 573 Query: 85 G 83 G Sbjct: 574 G 574
>MYOD_DICDI (P34109) Myosin ID heavy chain| Length = 1109 Score = 30.4 bits (67), Expect = 2.0 Identities = 23/58 (39%), Positives = 27/58 (46%) Frame = -3 Query: 259 GYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAPPAP 86 G +PS R +A RGGM P GS A S +G A RGG +PR AP Sbjct: 1052 GPSTAPSGRGAAPPSSRGGMAPRG--GSVAPPSSRGGIAPRGGIAPRGGMAPRGGMAP 1107
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.4 bits (67), Expect = 2.0 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = -3 Query: 265 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRA 98 APG +G P R +AG + +RG P A GSP + +RG P Sbjct: 712 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD------------GARGLTGPIG 759 Query: 97 PPAP 86 PP P Sbjct: 760 PPGP 763
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 30.4 bits (67), Expect = 2.0 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQE-ERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAPPA 89 APG EGSP S G + +RG PA A G P G RG P P Sbjct: 579 APGAEGSPGRDGSPGAKGDRGETGPAGAPGPPGAPGAPGPVGPAGKSGDRGETGPAGPIG 638 Query: 88 P 86 P Sbjct: 639 P 639 Score = 28.1 bits (61), Expect = 9.9 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Frame = -3 Query: 265 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRA 98 APG +G P R +AG + +RG P A G+P + RG P Sbjct: 288 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKD------------GVRGLTGPIG 335 Query: 97 PPAP 86 PP P Sbjct: 336 PPGP 339
>BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like protein)| Length = 1058 Score = 30.4 bits (67), Expect = 2.0 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = +3 Query: 111 SPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRWDGEPSYPGASKFFHWRC 290 S ++ + KK+ EP A LPT CA IPP+ L K F R Sbjct: 422 STSKVRKKAKKAKKALAEPCAVLPTVCAPYIPPQR-----LNRIANQVAIQRKKQFVERA 476 Query: 291 SSTWTI-RLFRRECSGLALLRSTLYGQR 371 S W + RL R L L+S+L QR Sbjct: 477 HSYWLLKRLSRNGAPLLRRLQSSLQSQR 504
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 30.0 bits (66), Expect = 2.6 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Frame = +1 Query: 82 SPAPGGPSAIHPHDWRGQRRKA---YCPARSLEQGCPRRVPESSLLAPPDQLTSDGMGNP 252 SP GGP+ +P +G P SL G P P S L PP + G GNP Sbjct: 262 SPMGGGPNGPNPRAMQGSPMGGPGQNSPMNSLPMGSPMGNPIGSPLGPP---SGPGPGNP 318
>PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B) (CGI-PDE B) (CGIPDE1) (CGIP1) Length = 1112 Score = 30.0 bits (66), Expect = 2.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 33 SCSLFFLLAILSRTRRIPGAGGALG 107 +C+ FFL L+RT+R PG G + G Sbjct: 126 ACAFFFLTCFLTRTKRGPGPGRSCG 150
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 30.0 bits (66), Expect = 2.6 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQE-ERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAPPA 89 APG EGSP S G + +RG PA G+P G RG P P Sbjct: 1017 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAG 1076 Query: 88 P 86 P Sbjct: 1077 P 1077 Score = 29.3 bits (64), Expect = 4.4 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Frame = -3 Query: 265 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRA 98 APG +G P R +AG + +RG P A GSP + RG P Sbjct: 723 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD------------GVRGLTGPIG 770 Query: 97 PPAP 86 PP P Sbjct: 771 PPGP 774
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 2.6 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQE-ERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAPPA 89 APG EG+P +AG + +RG PA G+P G RG P P Sbjct: 1006 APGAEGAPGRDGAAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065 Query: 88 P 86 P Sbjct: 1066 P 1066
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 30.0 bits (66), Expect = 2.6 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = +3 Query: 69 RTRRIPGAGGALGD---SPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRW 239 R+ R+P + A + SP + + ++S P + R G+P PPR PA + Sbjct: 1231 RSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVP-------PPRGVPPARAQP 1283 Query: 240 DGEPSYPGASK 272 DG PS PG SK Sbjct: 1284 DGTPS-PGGSK 1293
>ISPDF_LEIXX (Q6ADI0) IspD/ispF bifunctional enzyme [Includes:| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C-methyl-D-erythritol 2,4-cyclod Length = 386 Score = 30.0 bits (66), Expect = 2.6 Identities = 21/63 (33%), Positives = 25/63 (39%) Frame = +3 Query: 81 IPGAGGALGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRWDGEPSYP 260 IPG A + P R ++ L PR G T P A LRW+GEP Sbjct: 205 IPGDARAFKITTPWDLRRAEELLAGLAAPRIGFGTDTHAFDPSAELWLAGLRWEGEPGLA 264 Query: 261 GAS 269 G S Sbjct: 265 GHS 267
>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)| Length = 543 Score = 29.6 bits (65), Expect = 3.4 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 16/82 (19%) Frame = +1 Query: 79 GSPAPGGPSAIHPHDWRGQRRKAYCPARSLE-------QGCPRRVPESSLLAPPDQ---- 225 G+P GGP PH W+ Q R A + Q RR P+ + PP Q Sbjct: 362 GAPGQGGPE--DPHPWQNQLRAARDRNEQTQVQYLDPNQDPLRRRPQRQVSRPPQQPRQA 419 Query: 226 -----LTSDGMGNPHIQAPQSF 276 G G P Q PQ + Sbjct: 420 PQGPPPQQPGYGYPQQQQPQRY 441
>PLIN_HUMAN (O60240) Perilipin (PERI) (Lipid droplet-associated protein)| Length = 522 Score = 29.6 bits (65), Expect = 3.4 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 187 AVGSPARGS*QGSKLFFSARASRGGESPRAPPAPG 83 A G+P+ G +L R+ R +SP APP PG Sbjct: 435 ASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPG 469
>ADA15_MOUSE (O88839) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (AD56) Length = 864 Score = 29.6 bits (65), Expect = 3.4 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +3 Query: 177 LPTACAGIIPPRSS*PADLRW-DGEPSYPGASKFFHWRCSSTWTIRLFRRECSGL 338 LP C G S P+D+R DGEP G + H RC+S + R+C L Sbjct: 490 LPEFCPG---DSSQCPSDIRLGDGEPCASGEAVCMHGRCAS------YARQCQSL 535
>41_DROME (Q9V8R9) Protein 4.1 homolog (Protein coracle)| Length = 1698 Score = 29.6 bits (65), Expect = 3.4 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Frame = +3 Query: 60 ILSRTRRIPGAGGALGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADL-- 233 +LS T R G A+ + L+ ++K+S P P+ G + G P S AD Sbjct: 657 LLSPTTRAKLQGSAVDAAAVPLSDSQKRSYSPTKGPQ-GYSSGAPGSYKPISDPTADFLE 715 Query: 234 --RWDGEPSYPGASK 272 R++ EP Y G SK Sbjct: 716 SQRYNKEPGYVGPSK 730
>BTBD2_HUMAN (Q9BX70) BTB/POZ domain-containing protein 2| Length = 525 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 193 AHAVGSPARGS*QGSKLFFSARASRGGESPRAPPAPG 83 A+A +PA G+ + +A A+ G +P APP PG Sbjct: 30 ANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPG 66
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 4.4 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Frame = -3 Query: 265 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRA 98 APG +G P R +AG + +RG P A GSP + RG P Sbjct: 712 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD------------GVRGLTGPIG 759 Query: 97 PPAP 86 PP P Sbjct: 760 PPGP 763
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.3 bits (64), Expect = 4.4 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Frame = -3 Query: 265 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRA 98 APG +G P R +AG + +RG P A GSP + RG P Sbjct: 719 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD------------GVRGLTGPIG 766 Query: 97 PPAP 86 PP P Sbjct: 767 PPGP 770
>TAF10_HUMAN (Q12962) Transcription initiation factor TFIID subunit 10| (Transcription initiation factor TFIID 30 kDa subunit) (TAF(II)30) (TAFII-30) (TAFII30) (STAF28) Length = 218 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 84 PGAGGALGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS 218 PGAG A G + P ARA + + E R P + G PP + Sbjct: 52 PGAGAAAGGTGPLAARAGEPA-----ERRGAAPVSAGGAAPPEGA 91
>ADA15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (CRII-7) Length = 816 Score = 28.9 bits (63), Expect = 5.8 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +3 Query: 177 LPTACAGIIPPRSS*PADLRW-DGEPSYPGASKFFHWRCSSTWTIRLFRRECSGL 338 LP C G S P D+R DGEP G + H RC+S + R+C L Sbjct: 491 LPEFCLG---DSSQCPPDIRLGDGEPCASGEAVCMHGRCAS------YTRQCQSL 536
>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 930 Score = 28.9 bits (63), Expect = 5.8 Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 19/84 (22%) Frame = +1 Query: 58 LFSRARAGSPAP---GGPSAIHPHDWRG--------QRRKAYCPARS--------LEQGC 180 L SRA PAP GGPS PH+ + R A PAR L G Sbjct: 790 LTSRALPPEPAPALLGGPSP-RPHECASPLRLDVPPEGRCASAPARPALSAPAPRLGVGG 848 Query: 181 PRRVPESSLLAPPDQLTSDGMGNP 252 RR+P S APP LT G P Sbjct: 849 GRRLPFSGHRAPPALLTRVPSGGP 872
>CLIC6_MOUSE (Q8BHB9) Chloride intracellular channel 6| Length = 596 Score = 28.9 bits (63), Expect = 5.8 Identities = 26/96 (27%), Positives = 35/96 (36%) Frame = -3 Query: 301 QVDEQRQ*KNFEAPGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARAS 122 Q + R E PG G+P +A ++ G IP A +P+ QG S S Sbjct: 76 QAQDPRTGPEAETPGASGAPGEAEAAERDPEGA-IPQGAEEAPSAQQVQGMS---SGLDS 131 Query: 121 RGGESPRAPPAPGXXXXXXXXXXXXXXEQEGGLGQE 14 +G AP PG +E GQE Sbjct: 132 QG----EAPEVPGDSRREPEDPTASEAGEEAESGQE 163
>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor| Length = 1712 Score = 28.9 bits (63), Expect = 5.8 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = +1 Query: 7 RKTPAPNRLPAL----SFFFWLF-SRARAGSPA-PGGPSAIHPHDWRGQRRKAYC 153 R P P LP F F L ++ RAG P PG P A P W+G + C Sbjct: 431 RGPPGPPGLPGPPGPDGFLFGLKGAKGRAGFPGLPGSPGARGPKGWKGDAGECRC 485
>FOXH1_BRARE (Q9I9E1) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (Schmalspur protein) Length = 472 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 99 ALGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRWDGEPSYP 260 A DS P ++ K+ P E LPT+ A PP + P +R++G P P Sbjct: 335 AYSDSCPPPNKSSKRGNTPPWE----LPTSYAKYTPPNAVAPPSMRFNGNPFMP 384
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 10 KTPAPNRLPALSFFFWLFSRARAGSPAPGGPSAIHP 117 K P+P LPA S + GSP+ GP A HP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHP 297
>SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1060 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = -2 Query: 218 GGARRDDSGTRRGQPCSRLLAGQ*AFLLCPRQSWG*IAE 102 G A R DSG R QP +R L G F P Q IAE Sbjct: 829 GRAARVDSGQRVRQPLARALVGAPGFAELPEQLRAQIAE 867
>ADCY5_RABIT (P40144) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) Length = 1264 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS 161 AP G P HR + G+ + HA G ARGS Sbjct: 19 APASRGGPEHRSAWGEADSRANGYPHAPGGSARGS 53
>SYI_ACIAD (Q6FG02) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 945 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = -3 Query: 406 QVENTTSIALVRLCPYSVLLNSANPLHSLLNSLIVQVDEQRQ*KNF 269 +V++ T I + P+++ N A LH+ ++ +VQV R +NF Sbjct: 238 EVQDPTDIVIWTTTPWTLPANQAVALHAEIDYQLVQVQSDRGTQNF 283
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 10 KTPAPNRLPALSFFFWLFSRARAGSPAPGGPSAIHP 117 K P+P LPA S + GSP+ GP A HP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHP 297
>RASL1_MOUSE (Q9Z268) RasGAP-activating-like protein 1| Length = 799 Score = 28.5 bits (62), Expect = 7.6 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPR 186 WL + +A +P PG A HP +R R A GC R Sbjct: 663 WLSALRKASAPNPGKLVACHPGAFRSGRWTCCLQAERSAAGCSR 706
>TTDN1_MOUSE (Q9D011) TTD nonphotosensitive 1 protein homolog| Length = 178 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = +1 Query: 61 FSRARAGSPAPGG-PSAIHPHDWRGQRRKAYCPA--RSLEQGCPR 186 FS AR GSP+PGG P + Q + Y P ++ QG PR Sbjct: 72 FSGARFGSPSPGGYPGSYSRSPAGSQHQFGYSPGQQQTYPQGSPR 116
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Frame = -3 Query: 259 GYEGSPSHRRSAGQEERGGMI-------PAHAVGSPARGS*QGSKLFFSARASRGGESPR 101 G +G+P + G R G+ PA GSP +G + S+GG+ Sbjct: 1087 GEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGGKGEN 1146 Query: 100 APPAP 86 PP P Sbjct: 1147 GPPGP 1151
>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/60 (33%), Positives = 25/60 (41%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAPPAP 86 A G EG R G + G P +VG+P +G + R G E PR PP P Sbjct: 680 ASGEEGEAGARGDLGDMGQPG--PKGSVGNPGEPGLRGPE---GIRGLPGVEGPRGPPGP 734
>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)| Length = 325 Score = 28.1 bits (61), Expect = 9.9 Identities = 20/60 (33%), Positives = 25/60 (41%) Frame = -3 Query: 265 APGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAPPAP 86 A G EG R G + G P +VG+P +G + R G E PR PP P Sbjct: 84 ASGEEGEAGVRGDLGDMGQPG--PKGSVGNPGEPGLRGPE---GIRGLPGVEGPRGPPGP 138
>DMRT1_MOUSE (Q9QZ59) Doublesex- and mab-3-related transcription factor 1| Length = 374 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/58 (32%), Positives = 25/58 (43%) Frame = -3 Query: 268 EAPGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPRAP 95 E P G+P ++ G + G + A GS A GS S S S +SPR P Sbjct: 15 EVPHAPGAPPKGKAGGYSKAAGAMAGAAGGSGAGGSGGASGSGPSGLGSGSKKSPRLP 72
>GLGA_SHISS (Q3YW96) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 477 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPRRVPESSLLAPPDQLTS 234 W+ + +G P +H HDW AY AR P S+ L Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGR--------PAKSVFT-VHNLAY 165 Query: 235 DGMGNPH----IQAPQSFF 279 GM H IQ P SFF Sbjct: 166 QGMFYAHHMNDIQLPWSFF 184
>GLGA_SHIDS (Q32AV6) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 477 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPRRVPESSLLAPPDQLTS 234 W+ + +G P +H HDW AY AR P S+ L Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGR--------PAKSVFT-VHNLAY 165 Query: 235 DGMGNPH----IQAPQSFF 279 GM H IQ P SFF Sbjct: 166 QGMFYAHHMNDIQLPWSFF 184
>GLGA_SHIBS (Q31VJ4) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 477 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPRRVPESSLLAPPDQLTS 234 W+ + +G P +H HDW AY AR P S+ L Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGR--------PAKSVFT-VHNLAY 165 Query: 235 DGMGNPH----IQAPQSFF 279 GM H IQ P SFF Sbjct: 166 QGMFYAHHMNDIQLPWSFF 184
>GLGA_ECOLI (P0A6U8) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 477 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPRRVPESSLLAPPDQLTS 234 W+ + +G P +H HDW AY AR P S+ L Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGR--------PAKSVFT-VHNLAY 165 Query: 235 DGMGNPH----IQAPQSFF 279 GM H IQ P SFF Sbjct: 166 QGMFYAHHMNDIQLPWSFF 184
>GLGA_ECOL6 (P0A6U9) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 477 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPRRVPESSLLAPPDQLTS 234 W+ + +G P +H HDW AY AR P S+ L Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGR--------PAKSVFT-VHNLAY 165 Query: 235 DGMGNPH----IQAPQSFF 279 GM H IQ P SFF Sbjct: 166 QGMFYAHHMNDIQLPWSFF 184
>GLGA_ECO57 (P0A6V0) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 477 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Frame = +1 Query: 55 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPRRVPESSLLAPPDQLTS 234 W+ + +G P +H HDW AY AR P S+ L Sbjct: 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGR--------PAKSVFT-VHNLAY 165 Query: 235 DGMGNPH----IQAPQSFF 279 GM H IQ P SFF Sbjct: 166 QGMFYAHHMNDIQLPWSFF 184
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 28.1 bits (61), Expect = 9.9 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Frame = +3 Query: 81 IPGAGGALGDSP-------PRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRW 239 +PG GA G++ P A + LP R GLP A + PP S P +L Sbjct: 1380 LPGFPGAKGEAGFPGTPGVPGYAGEKGDGGLPGLPGRDGLPGADGPVGPPGPSGPQNLVE 1439 Query: 240 DGEPSYPG 263 GE PG Sbjct: 1440 PGEKGLPG 1447
>PLXA3_HUMAN (P51805) Plexin-A3 precursor (Plexin-4) (Semaphorin receptor SEX)| Length = 1871 Score = 28.1 bits (61), Expect = 9.9 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 14/106 (13%) Frame = +1 Query: 28 RLPALSFFFWLFSRARAGSPAPGGPSAIH-----------PHDWRGQRRKAYCPARSLEQ 174 R F F+ S ++ G P H PH+ Q + + P + Sbjct: 627 RFAGADFVFYNCSVLQSCMSCVGSPYPCHWCKYRHTCTSRPHECSFQEGRVHSP-----E 681 Query: 175 GCPRRVPESSLLAP---PDQLTSDGMGNPHIQAPQSFFIGVVRLLG 303 GCP +P LL P LT P Q+ Q + VVR+ G Sbjct: 682 GCPEILPSGDLLIPVGVMQPLTLRAKNLPQPQSGQKNYECVVRVQG 727
>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)| Length = 317 Score = 28.1 bits (61), Expect = 9.9 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Frame = -3 Query: 325 SLLNSLIVQVDEQRQ*KNFEAPGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QG-- 152 S N ++ Q+ N PG G P +AG RG P A G P R QG Sbjct: 120 SRFNQMLNQIPNDYH-SNRNQPGPPGPPGPPGAAGA--RGEPGPGGAPGFPGRPGVQGPP 176 Query: 151 -SKLFFSARASRG--GESPRAPPAP 86 + + RG + PR PP P Sbjct: 177 GERGLPGEKGERGIGSQGPRGPPGP 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,858,176 Number of Sequences: 219361 Number of extensions: 1462968 Number of successful extensions: 4711 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 4378 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4709 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
