>YBE1_SCHPO (O42980) Putative thiol protease C17D11.01 (EC 3.4.22.-)|
          Length = 420

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 56  HRSHHHRTH---PTAPADFPQIRSLSTAKKLPGSDPIPGEVRQAR 181
           H  HHH +H   P++PA+  Q    S ++K+    P P E +Q R
Sbjct: 304 HHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDR 348

>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 481

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 19/58 (32%), Positives = 22/58 (37%)
 Frame = +2

Query: 5   HSPSPAASNGHIPFITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGSDPIPGEVRQA 178
           H  S    N H P    H  HHH  HP  PA  P        ++ P   P P + R A
Sbjct: 33  HHASHGHHNSHHP--QHHHHHHHHHHPPPPAPQPPPPPPQQQQQQPPPAPQPPQARGA 88

>MAFB_RAT (P54842) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B) (Transcription factor
           MAF1)
          Length = 323

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 5   HSPSPAASNGHIPFITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGSDPIPG 163
           H   P A   H         HHH  H  +P   P   + S A++LP S P PG
Sbjct: 142 HHGYPGAGVTHDELGPHAHPHHHHHHQASP---PPSSAASPAQQLPTSHPGPG 191

>MAFB_MOUSE (P54841) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B) (Transcription factor
           MAF1) (Segmentation protein KR) (Kreisler)
          Length = 323

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 5   HSPSPAASNGHIPFITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGSDPIPG 163
           H   P A   H         HHH  H  +P   P   + S A++LP S P PG
Sbjct: 142 HHGYPGAGVTHDDLGQHAHPHHHHHHQASP---PPSSAASPAQQLPTSHPGPG 191

>DLX6A_BRARE (Q98877) Homeobox protein Dlx6a (DLX-6) (Distal-less homeobox|
           protein 6a)
          Length = 247

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 8   SPSPAASNGHIPFITLHR-SHHHRTHPTAP 94
           SPS AAS  H P   LH  SHHH  H ++P
Sbjct: 34  SPSMAAS--HYPLHCLHSGSHHHHQHDSSP 61

>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B)
          Length = 323

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +2

Query: 5   HSPSPAASNGHI---PFITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGSDPIPG 163
           H   P A   H    P    H  HHH+  P      P   + S A++LP S P PG
Sbjct: 142 HHAYPGAGVAHDELGPHAHPHHHHHHQASP------PPSSAASPAQQLPTSHPGPG 191

>CDX2_MESAU (Q04649) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)|
          Length = 313

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 20/60 (33%), Positives = 22/60 (36%)
 Frame = +2

Query: 14  SPAASNGHIPFITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGSDPIPGEVRQARSFCP 193
           SPAA+ G+      H  HH   HP  PA  P   S       PG  P P     A    P
Sbjct: 99  SPAAAMGYSSPADYHAHHHPHHHPHHPAAAPSCASGLLQTLNPG-PPGPAATGAAEQLSP 157

>CDX2_HUMAN (Q99626) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)|
           (CDX-3)
          Length = 313

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 20/60 (33%), Positives = 22/60 (36%)
 Frame = +2

Query: 14  SPAASNGHIPFITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGSDPIPGEVRQARSFCP 193
           SPAA+ G+      H  HH   HP  PA  P   S       PG  P P     A    P
Sbjct: 100 SPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPG-PPGPAATAAAEQLSP 158

>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-) (DEAH|
            box protein 34)
          Length = 1145

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 35   HIPFITLHRSHHHRTHPTAPADFP 106
            H+PF  L R  H  T P AP D P
Sbjct: 1078 HMPFTPLERIAHENTCPEAPGDDP 1101

>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)|
          Length = 611

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +2

Query: 2   AHSPSPAA-SNGHIPFITLHRS--HHHRTHPTAP 94
           AH+P PAA      P    H    HHH  HP AP
Sbjct: 27  AHTPDPAALGEESTPHAHAHPQARHHHHAHPHAP 60

>CDX2_MOUSE (P43241) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)|
          Length = 311

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +2

Query: 14  SPAASNGHIPFITLHRSHHHRTHPTAPADFPQIRS 118
           SPAA+ G+      H  HH   HP  PA  P   S
Sbjct: 99  SPAAAMGYSSPAEYHAHHHPHHHPHHPAASPSCAS 133

>RBS_ZANAE (O48550) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 178

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 14  SPAASNGHIPFITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGS 148
           SPA SN  +PF  LH S          A FP  R  + + KLP +
Sbjct: 16  SPAQSNMVVPFAGLHSS----------AAFPVTRKFADSSKLPSN 50

>MA205_DROME (P23226) 205 kDa microtubule-associated protein|
          Length = 1185

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 44  FITLHRSHHHRTHPTAPADFPQIRSLSTAKKLPGSDPIPGEVRQARSFCP 193
           F+     +H + +P A A  P + S S++      DP+PG   Q R F P
Sbjct: 225 FVKNLEENHSQLNPNAVAFVPGVGSQSSSPLPAAEDPLPGV--QPRPFLP 272

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
 Frame = +2

Query: 5   HSPSPAASN----GHIPFITLHRSHHHRTHPTAPA------DFPQIRSLSTAKKLPGSDP 154
           H P+PA  +     H+P     R H HR  PT           PQ   L   K L   DP
Sbjct: 81  HRPTPARDHRDPRDHLPPTRTRRDHQHRPPPTTTTTTIKDPQHPQDPLLLPTKTLQEEDP 140

>COBQ_CHRVO (Q7NXQ0) Cobyric acid synthase|
          Length = 490

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 217 PSSISTMAGAKAPCLTDLAWDRIRSWKLLGRGK*SNLGEICGRCGMSAVMVRAMESDEG 41
           P+ +  + G+K   L DLAW R + W    R      G++ G CG   ++ + +   +G
Sbjct: 292 PADLIVLPGSKN-VLADLAWLRAQGWDEALRRHLRYGGKVLGICGGLQMLGKKLHDPDG 349


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,281,837
Number of Sequences: 219361
Number of extensions: 484325
Number of successful extensions: 1959
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1945
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)