ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl09e02 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 80.9 bits (198), Expect = 7e-16 Identities = 40/63 (63%), Positives = 40/63 (63%) Frame = +3 Query: 144 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 323 MLTATKPLVGGAC TFVVPEARRKPGNGRRTSVSKVG L Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60 Query: 324 SAD 332 SAD Sbjct: 61 SAD 63
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 33.9 bits (76), Expect = 0.10 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +3 Query: 144 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSV 269 M TATKPLVG +F+V EARRKP N RRT V Sbjct: 1 MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRV 40
>TBX21_MOUSE (Q9JKD8) T-box transcription factor TBX21 (T-box protein 21)| (Transcription factor TBLYM) (T-cell-specific T-box transcription factor T-bet) Length = 530 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/71 (32%), Positives = 31/71 (43%) Frame = -1 Query: 213 SSAGPTTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQPCPGRS 34 S+ GPT + LA P A W A ++ ++ GWFRP T+ PG Sbjct: 410 SAPGPTVPYYRGQDVLA---PGAGWP------VAPQYPPKMSPAGWFRPMRTLPMDPGLG 460 Query: 33 GKEEVMEGSDP 1 EE +GS P Sbjct: 461 SSEE--QGSSP 469
>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium| channel protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1956 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/55 (30%), Positives = 22/55 (40%) Frame = +2 Query: 65 LGRNQPRRCNLPPHRVAQ*PTP*RTHDADGDQAASRGRVCRAVVVGPAEDVRGAR 229 LGR + LP + Q P P R H +G G + GPA D G + Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = -1 Query: 243 VSGEPRAPRTSSAGPTTTARHTRPRLAAWSPSA 145 +S EPR PR S+ RH RP L A P A Sbjct: 71 LSREPRGPRALSSFVRDARRHPRPALTASPPPA 103
>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) (Clk4-associating SR-related protein) Length = 653 Score = 28.5 bits (62), Expect = 4.4 Identities = 22/66 (33%), Positives = 26/66 (39%) Frame = -1 Query: 228 RAPRTSSAGPTTTARHTRPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQP 49 R+ S G + RH R R +WS S S R Y +R GR H G R Sbjct: 378 RSSSRSRRGYYRSGRHARSRSRSWSRSRSRSR---RYSRSRSRGRRHSDGGSRDGHRYSR 434 Query: 48 CPGRSG 31 P R G Sbjct: 435 SPARRG 440
>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA| ligase 2) (Acyl-activating enzyme 2) Length = 644 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 111 TRWGGRLHRLGWFRPS*TVQPCPGRSGKEEVMEGS 7 T W + RL W +P +VQ C +GK +G+ Sbjct: 37 TFWAEQAKRLDWIKPWSSVQQCDLHTGKARWFDGA 71
>MYO1F_HUMAN (O00160) Myosin If (Myosin-IE)| Length = 1098 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +2 Query: 65 LGRNQPRRCNLPPHRVAQ*PTP*RTHDADGDQAASRGRVCRAVVVGPAEDVRGARGSPET 244 + + +PRR + P R A P P R D +G ++RG ++ R RG P T Sbjct: 930 MAKGKPRRSSQAPTRAA--PAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRPPRGPPST 987
>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU| Length = 310 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -1 Query: 219 RTSSAGPTTTARHTRPRLAAWSPSASWVR 133 +T + GP T P + W+PS+ W R Sbjct: 191 KTGAVGPAQAPSPTPPARSGWTPSSRWPR 219
>YQBO_BACSU (P45931) Hypothetical protein yqbO| Length = 1585 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -3 Query: 244 GFRRASGTTNVLRRADDDGAAHAPPTSGLVAVSIVGTLRCWLLRYAMGRKVAPSWL 77 G + + +V + A+ + A SG+ AVS G ++ WL+ M K SWL Sbjct: 1311 GIVKGLDSVDVKKFAEKQAGSLAAAYSGMGAVS--GNVKQWLMAAIMATKTPMSWL 1364
>CHB4_ANTPO (P02847) Chorion class B protein PC401 precursor (Fragment)| Length = 171 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 153 PSASWVRYGVGYCATRWGGRLHRLG 79 PSA ++ VG C RWG L R G Sbjct: 8 PSALMIQSAVGQCLGRWGPGLGRCG 32
>VE2_HPV5B (P26545) Regulatory protein E2| Length = 514 Score = 27.3 bits (59), Expect = 9.7 Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 4/83 (4%) Frame = -1 Query: 237 GEPRAPRTSSAGPTTTARHT---RPRLAAWSPSASWVRYGVGYCATRWGGRLHRLGWFRP 67 G R+PR S P+T + T R A SP+ R G GGRL R G R Sbjct: 323 GGGRSPRRRSRSPSTYSSCTTQRSQRARAESPTTRGARGSRGSRGGSRGGRLRRRG--RS 380 Query: 66 S*TVQPCPGRS-GKEEVMEGSDP 1 S + P RS G + G P Sbjct: 381 SSSSSPAHKRSRGGSAKLRGVSP 403 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,175,020 Number of Sequences: 219361 Number of extensions: 849654 Number of successful extensions: 2398 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2350 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2397 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
