>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +1

Query: 295 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTS
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTS 91

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +1

Query: 295 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTS
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTS 91

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +1

Query: 298 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           LEL V R ++ D  +   +L ++++ I+++TSSMT+
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTA 83

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 39   PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 131
            P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1129 PPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159

>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 137
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387

>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)|
           (Phosphorylethanolamine transferase)
           (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 121 IRFGDGAGGLARVRGASGTEATRRCCVGVY 32
           IR G GAGG A ++G  G    R  C G Y
Sbjct: 2   IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 298 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           LEL V   QD  P +   +L  +++ IR++TSSMT+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTA 92

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 134
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48

>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1280

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 8   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 103
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157

>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued) (p135)
          Length = 1278

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 8   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 103
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157

>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1281

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 8   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 103
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 39   PTQQRRVASVPLAPRTLASPPAPSPNR 119
            P ++  +  VPLAP    +PP+P+P R
Sbjct: 1129 PPKEGTLTQVPLAPPPPGAPPSPAPAR 1155

>YK57_YEAST (P36157) Hypothetical 39.9 kDa protein in SIS2-MTD1 intergenic|
           region
          Length = 363

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 36  TPTQQRRVASVPLAPRTLASPPAPSPNRIRPAS 134
           TP QQ+R +S P +  TL   P  +P+   P+S
Sbjct: 5   TPQQQQRFSSTPQSSHTLIFSPIRAPSMQTPSS 37

>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 39   PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 131
            P ++  +  VPLAP    +PP+P+P R   A
Sbjct: 1124 PPKEGVLGQVPLAPPQPGAPPSPAPARFSTA 1154

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +1

Query: 322 QDVDPGVQRLALESMRQEIRSATSSMTS 405
           Q+ D  + + ALE+M+  I+++TSSMT+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTA 75

>CHS4_NEUCR (Q01285) Chitin synthase 4 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 4) (Class-IV chitin
           synthase 4)
          Length = 1195

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASPPAPSPN 116
           P+QQ+RV S+   P TL   P+P+PN
Sbjct: 6   PSQQQRVPSISSFPETL---PSPNPN 28

>PHF1_HUMAN (O43189) PHD finger protein 1 (PHF1 protein)|
          Length = 567

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASPPAPSPNR 119
           P +QR  A +  A +   SPP+PSPN+
Sbjct: 399 PQEQRERAHLQRALQASVSPPSPSPNQ 425

>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 57  VASVPLAPRTLASPPAPSP 113
           V  V   PR +ASPPAPSP
Sbjct: 89  VRRVGAPPRRMASPPAPSP 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.124    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,202,271
Number of Sequences: 219361
Number of extensions: 319081
Number of successful extensions: 1074
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)