ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191846.1| Oryza sativa (japonica cultivar-group), predic... 44 0.34
2gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.34
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
4dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
5dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.34
6ref|NM_194739.1| Oryza sativa (japonica cultivar-group) hypothet... 42 1.4
7ref|NM_197648.1| Oryza sativa (japonica cultivar-group) putative... 42 1.4
8gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 1.4
9gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.4
10gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
11gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
12gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno... 42 1.4
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
15gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 5.3
16ref|XM_517657.1| PREDICTED: Pan troglodytes similar to COUP tran... 40 5.3
17ref|XM_466780.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
18ref|XM_450749.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
19ref|NM_005654.4| Homo sapiens nuclear receptor subfamily 2, grou... 40 5.3
20ref|NM_192112.1| Oryza sativa (japonica cultivar-group), predic... 40 5.3
21gb|BC017493.1| Homo sapiens nuclear receptor subfamily 2, group ... 40 5.3
22gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.3
23gb|BC004154.2| Homo sapiens nuclear receptor subfamily 2, group ... 40 5.3
24gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.3
25gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.3
26ref|NM_010151.1| Mus musculus nuclear receptor subfamily 2, grou... 40 5.3
27emb|AJ249440.1|BTA249440 Bos taurus mRNA for transcription facto... 40 5.3
28gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 5.3
29gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, compl... 40 5.3
30gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.3
31emb|X16155.1|HSCOUPTF Human mRNA for chicken ovalbumin upstream ... 40 5.3
32emb|X74134.1|MMCOUP M.musculus COUP-TF1 40 5.3
33emb|X12795.1|HSEAR3 Human v-erbA related ear-3 gene 40 5.3
34emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.3
35emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 5.3
36emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 5.3
37emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.3
38emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.3
39emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 40 5.3
40gb|AY118719.1| Drosophila melanogaster AT29177 full insert cDNA 40 5.3
41ref|NM_057400.3| Drosophila melanogaster spineless CG6993-RA (ss... 40 5.3
42gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complet... 40 5.3
43gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.3
44dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
45dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
46gb|AC007647.6|AC007647 Drosophila melanogaster, chromosome 3R, r... 40 5.3
47gb|AC011615.4|AC011615 Drosophila melanogaster, chromosome 3R, r... 40 5.3
48ref|NM_175804.2| Bos taurus nuclear receptor subfamily 2, group ... 40 5.3
49gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 5.3
50gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.3
51dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
52dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
53dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
54dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
55dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
56dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
57dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
58gb|AE003713.3| Drosophila melanogaster chromosome 3R, section 51... 40 5.3
59gb|AF050630.1|AF050630 Drosophila melanogaster Ahr homolog spine... 40 5.3
60gb|U60417.1|SPU60417 Streptomyces pristinaespiralis 4-dimethylam... 40 5.3
61emb|Z18292.1|BTTRFSQA Bos taurus transcription factor sequence 40 5.3
62gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 5.3
63dbj|AB045121.1| Oryza sativa (japonica cultivar-group) RRF1 mRNA... 40 5.3 
>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 257  ggagggtactacccacccacaccatccgtcggcacctc 294
            |||||||||||||| ||||| || ||| ||||||||||
Sbjct: 1393 ggagggtactacccgcccacgccgtccatcggcacctc 1430



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 307 tggtggagactacaacccgccctcgccgtc 336
           |||||||| ||||||||| |||||||||||
Sbjct: 171 tggtggaggctacaacccaccctcgccgtc 200



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 257  ggagggtactacccacccacaccatccgtcggc 289
            ||||| |||||||| ||||| ||||||||||||
Sbjct: 1000 ggaggctactacccgcccacgccatccgtcggc 1032



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 128 ttcggtggccgcaaggactactac 151
           ||||||||||| ||||||||||||
Sbjct: 94  ttcggtggccggaaggactactac 117
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 219     cgccaccctgctcgccggcgcc 240
               ||||||||||||||||||||||
Sbjct: 1243767 cgccaccctgctcgccggcgcc 1243746
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 257      ggagggtactacccacccacaccatccgtcggcacctc 294
                |||||||||||||| ||||| || ||| ||||||||||
Sbjct: 30288790 ggagggtactacccgcccacgccgtccatcggcacctc 30288827



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 307      tggtggagactacaacccgccctcgccgtc 336
                |||||||| ||||||||| |||||||||||
Sbjct: 30287568 tggtggaggctacaacccaccctcgccgtc 30287597



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 257      ggagggtactacccacccacaccatccgtcggc 289
                ||||| |||||||| ||||| ||||||||||||
Sbjct: 30288397 ggaggctactacccgcccacgccatccgtcggc 30288429



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 128      ttcggtggccgcaaggactactac 151
                ||||||||||| ||||||||||||
Sbjct: 30287346 ttcggtggccggaaggactactac 30287369



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 168      acccaaaccactcaccgagcccca 191
                ||||||| ||||||||||||||||
Sbjct: 28396803 acccaaaacactcaccgagcccca 28396780
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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 257   ggagggtactacccacccacaccatccgtcggcacctc 294
             |||||||||||||| ||||| || ||| ||||||||||
Sbjct: 77109 ggagggtactacccgcccacgccgtccatcggcacctc 77146



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 307   tggtggagactacaacccgccctcgccgtc 336
             |||||||| ||||||||| |||||||||||
Sbjct: 75887 tggtggaggctacaacccaccctcgccgtc 75916



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 257   ggagggtactacccacccacaccatccgtcggc 289
             ||||| |||||||| ||||| ||||||||||||
Sbjct: 76716 ggaggctactacccgcccacgccatccgtcggc 76748



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 128   ttcggtggccgcaaggactactac 151
             ||||||||||| ||||||||||||
Sbjct: 75665 ttcggtggccggaaggactactac 75688
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>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 257  ggagggtactacccacccacaccatccgtcggcacctc 294
            |||||||||||||| ||||| || ||| ||||||||||
Sbjct: 1483 ggagggtactacccgcccacgccgtccatcggcacctc 1520



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 307 tggtggagactacaacccgccctcgccgtc 336
           |||||||| ||||||||| |||||||||||
Sbjct: 261 tggtggaggctacaacccaccctcgccgtc 290



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 257  ggagggtactacccacccacaccatccgtcggc 289
            ||||| |||||||| ||||| ||||||||||||
Sbjct: 1090 ggaggctactacccgcccacgccatccgtcggc 1122



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 128 ttcggtggccgcaaggactactac 151
           ||||||||||| ||||||||||||
Sbjct: 148 ttcggtggccggaaggactactac 171
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>ref|NM_194739.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0004A06.11), mRNA
          Length = 882

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 257 ggagggtactacccacccacaccatccgtcggc 289
           ||||| |||||||| ||||| ||||||||||||
Sbjct: 379 ggaggctactacccgcccacgccatccgtcggc 411
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>ref|NM_197648.1| Oryza sativa (japonica cultivar-group) putative aminotransferase
           (OSJNBa0082M15.2), mRNA
          Length = 1449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 220 gccaccctgctcgccggcgcc 240
           |||||||||||||||||||||
Sbjct: 40  gccaccctgctcgccggcgcc 60
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 235     ggcgccgccgcaaggaggtgg 255
               |||||||||||||||||||||
Sbjct: 1710823 ggcgccgccgcaaggaggtgg 1710843
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 226     ctgctcgccggcgccgccgca 246
               |||||||||||||||||||||
Sbjct: 2368516 ctgctcgccggcgccgccgca 2368536



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      tggcgtccggcacttcggcg 100
               ||||||||||||||||||||
Sbjct: 4258653 tggcgtccggcacttcggcg 4258672
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 257     ggagggtactacccacccacaccatccgtcggc 289
               ||||| |||||||| ||||| ||||||||||||
Sbjct: 1990386 ggaggctactacccgcccacgccatccgtcggc 1990418
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>gb|AC099734.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0004A06, complete sequence
          Length = 153510

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 257   ggagggtactacccacccacaccatccgtcggc 289
             ||||| |||||||| ||||| ||||||||||||
Sbjct: 81115 ggaggctactacccgcccacgccatccgtcggc 81147
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>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
             sequence
          Length = 158550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   gccaccctgctcgccggcgcc 240
             |||||||||||||||||||||
Sbjct: 63227 gccaccctgctcgccggcgcc 63207
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 220      gccaccctgctcgccggcgcc 240
                |||||||||||||||||||||
Sbjct: 21001164 gccaccctgctcgccggcgcc 21001184



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 257     ggagggtactacccacccacaccatccgtcggc 289
               ||||| |||||||| ||||| ||||||||||||
Sbjct: 1990386 ggaggctactacccgcccacgccatccgtcggc 1990418
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 220      gccaccctgctcgccggcgcc 240
                |||||||||||||||||||||
Sbjct: 21012428 gccaccctgctcgccggcgcc 21012448



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 257     ggagggtactacccacccacaccatccgtcggc 289
               ||||| |||||||| ||||| ||||||||||||
Sbjct: 1990337 ggaggctactacccgcccacgccatccgtcggc 1990369
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 221     ccaccctgctcgccggcgccgccg 244
               |||||||||||||| |||||||||
Sbjct: 4551525 ccaccctgctcgcccgcgccgccg 4551502
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>ref|XM_517657.1| PREDICTED: Pan troglodytes similar to COUP transcription factor 1
           (COUP-TF1) (COUP-TF I) (V-ERBA related protein EAR-3)
           (LOC461753), mRNA
          Length = 1287

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 120 ctgctcgccggcgccgccgc 101
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>ref|XM_466780.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 744

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cctgctcgccggcgccgccg 244
           ||||||||||||||||||||
Sbjct: 384 cctgctcgccggcgccgccg 403
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>ref|XM_450749.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 394 ctgctcgccggcgccgccgc 413
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>ref|NM_005654.4| Homo sapiens nuclear receptor subfamily 2, group F, member 1 (NR2F1),
            mRNA
          Length = 3210

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  ctgctcgccggcgccgccgc 245
            ||||||||||||||||||||
Sbjct: 1807 ctgctcgccggcgccgccgc 1788
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>ref|NM_192112.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1284

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 168 acccaaaccactcaccgagcccca 191
           ||||||| ||||||||||||||||
Sbjct: 136 acccaaaacactcaccgagcccca 113
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>gb|BC017493.1| Homo sapiens nuclear receptor subfamily 2, group F, member 1, mRNA
            (cDNA clone MGC:17907 IMAGE:3912075), complete cds
          Length = 3210

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  ctgctcgccggcgccgccgc 245
            ||||||||||||||||||||
Sbjct: 1807 ctgctcgccggcgccgccgc 1788
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     tcgtcgccggcggcgagaac 127
               ||||||||||||||||||||
Sbjct: 3021808 tcgtcgccggcggcgagaac 3021827
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>gb|BC004154.2| Homo sapiens nuclear receptor subfamily 2, group F, member 1, mRNA
           (cDNA clone MGC:2388 IMAGE:2824138), complete cds
          Length = 1658

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 208 ctgctcgccggcgccgccgc 189
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 226     ctgctcgccggcgccgccgc 245
               ||||||||||||||||||||
Sbjct: 2340786 ctgctcgccggcgccgccgc 2340805
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    tcgtcgccggcggcgagaac 127
              ||||||||||||||||||||
Sbjct: 210472 tcgtcgccggcggcgagaac 210453
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>ref|NM_010151.1| Mus musculus nuclear receptor subfamily 2, group F, member 1
           (Nr2f1), mRNA
          Length = 2320

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 423 ctgctcgccggcgccgccgc 404
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>emb|AJ249440.1|BTA249440 Bos taurus mRNA for transcription factor COUP-TFI (COUP-TFI gene)
          Length = 2205

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 228 ctgctcgccggcgccgccgc 209
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    cctgctcgccggcgccgccg 244
              ||||||||||||||||||||
Sbjct: 572036 cctgctcgccggcgccgccg 572055
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>gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, complete sequence
          Length = 180056

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   ctgctcgccggcgccgccgc 245
             ||||||||||||||||||||
Sbjct: 52518 ctgctcgccggcgccgccgc 52499
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     cctgctcgccggcgccgccg 244
               ||||||||||||||||||||
Sbjct: 2902579 cctgctcgccggcgccgccg 2902598
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>emb|X16155.1|HSCOUPTF Human mRNA for chicken ovalbumin upstream promoter transcription
           factor (COUP-TF)
          Length = 1513

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 105 ctgctcgccggcgccgccgc 86
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>emb|X74134.1|MMCOUP M.musculus COUP-TF1
          Length = 2320

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 423 ctgctcgccggcgccgccgc 404
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>emb|X12795.1|HSEAR3 Human v-erbA related ear-3 gene
          Length = 2511

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 597 ctgctcgccggcgccgccgc 578
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    cctgctcgccggcgccgccg 244
              ||||||||||||||||||||
Sbjct: 339443 cctgctcgccggcgccgccg 339424
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    cctgctcgccggcgccgccg 244
              ||||||||||||||||||||
Sbjct: 247277 cctgctcgccggcgccgccg 247258
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    cctgctcgccggcgccgccg 244
              ||||||||||||||||||||
Sbjct: 114553 cctgctcgccggcgccgccg 114534
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ctgctcgccggcgccgccgc 245
              ||||||||||||||||||||
Sbjct: 502194 ctgctcgccggcgccgccgc 502213
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     tcgtcgccggcggcgagaac 127
               ||||||||||||||||||||
Sbjct: 4062244 tcgtcgccggcggcgagaac 4062225
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   aacccgccctcgccgtcgac 339
             ||||||||||||||||||||
Sbjct: 77519 aacccgccctcgccgtcgac 77500
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>gb|AY118719.1| Drosophila melanogaster AT29177 full insert cDNA
          Length = 2593

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  cacccacaccatccgtcggc 289
            ||||||||||||||||||||
Sbjct: 1556 cacccacaccatccgtcggc 1575
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>ref|NM_057400.3| Drosophila melanogaster spineless CG6993-RA (ss), mRNA
          Length = 5190

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  cacccacaccatccgtcggc 289
            ||||||||||||||||||||
Sbjct: 3315 cacccacaccatccgtcggc 3334
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>gb|AC010973.6| Homo sapiens BAC clone RP11-148K1 from 7, complete sequence
          Length = 222605

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    ggcgaggactccccgcccgc 384
              ||||||||||||||||||||
Sbjct: 124662 ggcgaggactccccgcccgc 124643
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ctgctcgccggcgccgccgc 245
              ||||||||||||||||||||
Sbjct: 907004 ctgctcgccggcgccgccgc 907023
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 222      caccctgctcgccggcgccgccgc 245
                |||||||| |||||||||||||||
Sbjct: 16712876 caccctgcacgccggcgccgccgc 16712853



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 226      ctgctcgccggcgccgccgc 245
                ||||||||||||||||||||
Sbjct: 12584535 ctgctcgccggcgccgccgc 12584554
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 225      cctgctcgccggcgccgccg 244
                ||||||||||||||||||||
Sbjct: 24651558 cctgctcgccggcgccgccg 24651539
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>gb|AC007647.6|AC007647 Drosophila melanogaster, chromosome 3R, region 89B-89C, BAC clone
              BACR05P04, complete sequence
          Length = 194335

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    cacccacaccatccgtcggc 289
              ||||||||||||||||||||
Sbjct: 170842 cacccacaccatccgtcggc 170823
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>gb|AC011615.4|AC011615 Drosophila melanogaster, chromosome 3R, region 89D-89D, BAC clone
             BACR01H23, complete sequence
          Length = 199653

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   cacccacaccatccgtcggc 289
             ||||||||||||||||||||
Sbjct: 35983 cacccacaccatccgtcggc 35964
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>ref|NM_175804.2| Bos taurus nuclear receptor subfamily 2, group F, member 1 (NR2F1),
           mRNA
          Length = 2205

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 228 ctgctcgccggcgccgccgc 209
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 221     ccaccctgctcgccggcgccgccg 244
               |||||||||||||| |||||||||
Sbjct: 4543678 ccaccctgctcgcccgcgccgccg 4543655
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    ctgctcgccggcgccgccgc 245
              ||||||||||||||||||||
Sbjct: 525371 ctgctcgccggcgccgccgc 525390
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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0519D04
          Length = 193068

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    acccaaaccactcaccgagcccca 191
              ||||||| ||||||||||||||||
Sbjct: 111903 acccaaaacactcaccgagcccca 111880
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>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0047B10
          Length = 158798

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   caccctgctcgccggcgccgccgc 245
             |||||||| |||||||||||||||
Sbjct: 61570 caccctgcacgccggcgccgccgc 61547
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>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1596_C06
          Length = 124721

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 222    caccctgctcgccggcgccgccgc 245
              |||||||| |||||||||||||||
Sbjct: 121015 caccctgcacgccggcgccgccgc 120992
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>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0041C07
          Length = 179047

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ctgctcgccggcgccgccgc 245
             ||||||||||||||||||||
Sbjct: 50473 ctgctcgccggcgccgccgc 50492
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>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0711A01
          Length = 162400

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ctgctcgccggcgccgccgc 245
             ||||||||||||||||||||
Sbjct: 99862 ctgctcgccggcgccgccgc 99881
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>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1372_D06
          Length = 129242

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   cctgctcgccggcgccgccg 244
             ||||||||||||||||||||
Sbjct: 32956 cctgctcgccggcgccgccg 32937
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>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_C01
          Length = 124548

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   cctgctcgccggcgccgccg 244
             ||||||||||||||||||||
Sbjct: 96107 cctgctcgccggcgccgccg 96088
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>gb|AE003713.3| Drosophila melanogaster chromosome 3R, section 51 of 118 of the
             complete sequence
          Length = 226561

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   cacccacaccatccgtcggc 289
             ||||||||||||||||||||
Sbjct: 34151 cacccacaccatccgtcggc 34132
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>gb|AF050630.1|AF050630 Drosophila melanogaster Ahr homolog spineless (ss) mRNA, complete cds
          Length = 5207

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  cacccacaccatccgtcggc 289
            ||||||||||||||||||||
Sbjct: 3318 cacccacaccatccgtcggc 3337
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>gb|U60417.1|SPU60417 Streptomyces pristinaespiralis 4-dimethylamino-L-phenylalanine
           precursor biosynthesis (papA, papC, papB, papM) genes,
           complete cds
          Length = 4740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cctgctcgccggcgccgccg 244
           ||||||||||||||||||||
Sbjct: 346 cctgctcgccggcgccgccg 365
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>emb|Z18292.1|BTTRFSQA Bos taurus transcription factor sequence
          Length = 257

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 77  ctgctcgccggcgccgccgc 58
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 221     ccaccctgctcgccggcgccgccg 244
               |||||||||||||| |||||||||
Sbjct: 4768038 ccaccctgctcgcccgcgccgccg 4768015
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>dbj|AB045121.1| Oryza sativa (japonica cultivar-group) RRF1 mRNA for RING finger 1,
           complete cds
          Length = 1453

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 ctgctcgccggcgccgccgc 245
           ||||||||||||||||||||
Sbjct: 488 ctgctcgccggcgccgccgc 507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,749,155
Number of Sequences: 3902068
Number of extensions: 2749155
Number of successful extensions: 70404
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67971
Number of HSP's gapped (non-prelim): 2433
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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