ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 9e-08
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
3gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 66 9e-08
4dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
5dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
7dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
9emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G... 54 4e-04
10gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 48 0.022
11ref|XM_542189.2| PREDICTED: Canis familiaris similar to signal p... 44 0.34
12gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 44 0.34
13gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.34
14ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative... 42 1.4
15gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 42 1.4
16ref|XM_532375.2| PREDICTED: Canis familiaris similar to TPA regu... 42 1.4
17gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 geno... 42 1.4
18emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.4
19emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 42 1.4
20gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.4
21tpg|BK000089.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 42 1.4
22dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
24gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.3
25gb|DQ213916.1| Taeniopygia guttata clone 0058P0058F05 macrophage... 40 5.3
26gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.3
27gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.3
28ref|XM_530663.1| PREDICTED: Pan troglodytes LOC460813 (LOC460813... 40 5.3
29gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.3
30gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, comp... 40 5.3
31emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 5.3
32gb|AY098636.1| Mus musculus testhymin mRNA, complete cds 40 5.3
33gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), p... 40 5.3
34gb|AC156290.10| Mus musculus 6 BAC RP24-267I24 (Roswell Park Can... 40 5.3
35gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 5.3
36ref|XM_575380.1| PREDICTED: Rattus norvegicus similar to testhym... 40 5.3
37emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.3
38gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.3
39gb|AC090053.5| Leishmania major strain Friedlin chromosome Unkno... 40 5.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                    
Query: 363     aacgtgacgtacgaccaccgcgcgctggtcatcgacg 399
               |||||||||||||||||||||||| ||||||||||||
Sbjct: 8172540 aacgtgacgtacgaccaccgcgcggtggtcatcgacg 8172504
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                    
Query: 363     aacgtgacgtacgaccaccgcgcgctggtcatcgacg 399
               |||||||||||||||||||||||| ||||||||||||
Sbjct: 8170375 aacgtgacgtacgaccaccgcgcggtggtcatcgacg 8170339
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12,
              complete sequence
          Length = 195583

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                   
Query: 363    aacgtgacgtacgaccaccgcgcgctggtcatcgacg 399
              |||||||||||||||||||||||| ||||||||||||
Sbjct: 103970 aacgtgacgtacgaccaccgcgcggtggtcatcgacg 103934
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>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full
           insert sequence
          Length = 3250

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 363 aacgtgacgtacgaccaccgcgcgctggtcatcgacg 399
           |||||||||||||||||||||||| ||||||||||||
Sbjct: 396 aacgtgacgtacgaccaccgcgcggtggtcatcgacg 432
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>dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H02, full
            insert sequence
          Length = 3078

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 363  aacgtgacgtacgaccaccgcgcgctggtcatcgacg 399
            |||||||||||||||||||||||  ||||||||||||
Sbjct: 2428 aacgtgacgtacgaccaccgcgctgtggtcatcgacg 2464
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 362      caacgtgacgtacgaccaccgcgcgctggtcatcg 396
                ||||||||||||||||||||||||| || ||||||
Sbjct: 13826415 caacgtgacgtacgaccaccgcgcggtgctcatcg 13826381
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>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full
           insert sequence
          Length = 3036

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 362 caacgtgacgtacgaccaccgcgcgctggtcatcg 396
           ||||||||||||||||||||||||| || ||||||
Sbjct: 280 caacgtgacgtacgaccaccgcgcggtgctcatcg 314
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 362      caacgtgacgtacgaccaccgcgcgctggtcatcg 396
                ||||||||||||||||||||||||| || ||||||
Sbjct: 13780695 caacgtgacgtacgaccaccgcgcggtgctcatcg 13780661
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>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 155451

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 362    caacgtgacgtacgaccaccgcgcgctggtcatcg 396
              ||||||||||||||||||||||||| || ||||||
Sbjct: 142074 caacgtgacgtacgaccaccgcgcggtgctcatcg 142040
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 305     cgcggcggcggccctgctgctcgc 328
               ||||||||||||||||||||||||
Sbjct: 3806828 cgcggcggcggccctgctgctcgc 3806805
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>ref|XM_542189.2| PREDICTED: Canis familiaris similar to signal peptide peptidase-like
            2B isoform 2 (LOC485071), mRNA
          Length = 2643

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 318  ctgctgctcgcgctgctctgcctggc 343
            ||||||||||| ||||||||||||||
Sbjct: 1276 ctgctgctcgcactgctctgcctggc 1301
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 268     gcgacaaagcaatggcggccgtcggcaggc 297
               ||||||| ||||||||||||| ||||||||
Sbjct: 6229396 gcgacaaggcaatggcggccgccggcaggc 6229367
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 306     gcggcggcggccctgctgctcgcgctgctc 335
               |||||||||| | |||||||||||||||||
Sbjct: 2066216 gcggcggcgggcgtgctgctcgcgctgctc 2066245
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>ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase
            (OSJNBa0035H01.10), mRNA
          Length = 3384

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 143  ctccagctgctgctcgtcgcc 163
            |||||||||||||||||||||
Sbjct: 1509 ctccagctgctgctcgtcgcc 1489
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 311     ggcggccctgctgctcgcgct 331
               |||||||||||||||||||||
Sbjct: 5318653 ggcggccctgctgctcgcgct 5318633
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>ref|XM_532375.2| PREDICTED: Canis familiaris similar to TPA regulated locus
           (LOC475144), mRNA
          Length = 1509

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 317 cctgctgctcgcgctgctctg 337
           |||||||||||||||||||||
Sbjct: 60  cctgctgctcgcgctgctctg 80
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>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
             sequence
          Length = 64582

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   ctccagctgctgctcgtcgcc 163
             |||||||||||||||||||||
Sbjct: 59300 ctccagctgctgctcgtcgcc 59280
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 313    cggccctgctgctcgcgctgctctg 337
              ||||| |||||||||||||||||||
Sbjct: 228771 cggccatgctgctcgcgctgctctg 228747
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   gcggcggccctgctgctcgcg 329
             |||||||||||||||||||||
Sbjct: 66011 gcggcggccctgctgctcgcg 65991
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 298     tgccgagcgcggcggcggccc 318
               |||||||||||||||||||||
Sbjct: 4118766 tgccgagcgcggcggcggccc 4118786
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>tpg|BK000089.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose
            synthase-like D1 gene, complete cds
          Length = 4188

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 143  ctccagctgctgctcgtcgcc 163
            |||||||||||||||||||||
Sbjct: 1778 ctccagctgctgctcgtcgcc 1758
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 143      ctccagctgctgctcgtcgcc 163
                |||||||||||||||||||||
Sbjct: 22543582 ctccagctgctgctcgtcgcc 22543562
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 143      ctccagctgctgctcgtcgcc 163
                |||||||||||||||||||||
Sbjct: 22556050 ctccagctgctgctcgtcgcc 22556030
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    gcggcggcggccctgctgct 325
              ||||||||||||||||||||
Sbjct: 556863 gcggcggcggccctgctgct 556882
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>gb|DQ213916.1| Taeniopygia guttata clone 0058P0058F05 macrophage migration
           inhibitory factor (MIF) variant 1-like mRNA, complete
           sequence
          Length = 1030

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 303 agcgcggcggcggccctgctgctc 326
           |||||||||||||||| |||||||
Sbjct: 29  agcgcggcggcggccccgctgctc 52
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 299     gccgagcgcggcggcggccc 318
               ||||||||||||||||||||
Sbjct: 1535263 gccgagcgcggcggcggccc 1535244
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 292     gcaggctgccgagcgcggcg 311
               ||||||||||||||||||||
Sbjct: 2146268 gcaggctgccgagcgcggcg 2146249
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>ref|XM_530663.1| PREDICTED: Pan troglodytes LOC460813 (LOC460813), mRNA
          Length = 1057

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 315 gccctgctgctcgcgctgct 334
           ||||||||||||||||||||
Sbjct: 501 gccctgctgctcgcgctgct 482
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 313     cggccctgctgctcgcgctg 332
               ||||||||||||||||||||
Sbjct: 2534797 cggccctgctgctcgcgctg 2534816
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>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence
          Length = 187495

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 314    ggccctgctgctcgcgctgctctg 337
              |||||||||||||| |||||||||
Sbjct: 133930 ggccctgctgctcgggctgctctg 133907
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 374    cgaccaccgcgcgctggtcatcga 397
              ||||||||||||||||||| ||||
Sbjct: 247788 cgaccaccgcgcgctggtcgtcga 247811
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>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds
          Length = 6258

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ctgccgagcgcggcggcggc 316
           ||||||||||||||||||||
Sbjct: 590 ctgccgagcgcggcggcggc 571
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>gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), putative transposase,
            putative outer membrane protein OprM precursor (toxI),
            probable RND efflux transporter (toxH), probable RND
            efflux membrane-fusion protein precursor (toxG),
            hypothetical protein (toxF), LysR type regulatory protein
            (toxR), putative ubiquinone/menaquinone biosynthesis
            methyltransferase (toxA), putative GTP cyclohydrolase II
            (toxB), WD repeat portein (toxC), hypothetical protein
            (toxD), putative deaminase (toxE), and putative
            transposase genes, complete cds
          Length = 16987

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  gcggcggccctgctgctcgc 328
            ||||||||||||||||||||
Sbjct: 3749 gcggcggccctgctgctcgc 3730
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>gb|AC156290.10| Mus musculus 6 BAC RP24-267I24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 144883

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ctgccgagcgcggcggcggc 316
             ||||||||||||||||||||
Sbjct: 31445 ctgccgagcgcggcggcggc 31426
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   gcggcggccctgctgctcgc 328
             ||||||||||||||||||||
Sbjct: 72763 gcggcggccctgctgctcgc 72744
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>ref|XM_575380.1| PREDICTED: Rattus norvegicus similar to testhymin (LOC500026), mRNA
          Length = 2369

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ctgccgagcgcggcggcggc 316
           ||||||||||||||||||||
Sbjct: 212 ctgccgagcgcggcggcggc 193
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    tgccgagcgcggcggcggcc 317
              ||||||||||||||||||||
Sbjct: 749571 tgccgagcgcggcggcggcc 749590
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     gcggcggccctgctgctcgc 328
               ||||||||||||||||||||
Sbjct: 3137752 gcggcggccctgctgctcgc 3137733
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>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323,
             complete sequence
          Length = 66637

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   gccctgctgctcgcgctgct 334
             ||||||||||||||||||||
Sbjct: 25565 gccctgctgctcgcgctgct 25584


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,762,611
Number of Sequences: 3902068
Number of extensions: 2762611
Number of successful extensions: 56426
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54897
Number of HSP's gapped (non-prelim): 1529
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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