>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9|
          Length = 705

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 22/54 (40%), Positives = 25/54 (46%)
 Frame = +3

Query: 162 GGVPPDGYGAINEPEFRAGEPYIGRRYVDEGFPSDRRGAFGPDIHDRNMYPPPP 323
           GG+PP GY        R G P  GR     G P + RG +GP    R  Y PPP
Sbjct: 327 GGMPPGGYRG------RGGFPGPGR---GGGPPQNGRGGYGPPGRGRGGYGPPP 371

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +3

Query: 171  PPDGYGAINEPEFRAGEPYIGRRYVDEGFPSDRRGAFGPDIHDRNMYP-------PPPTA 329
            PP   G I  P      P +G RY    FP D+RG + PD+    M P       P  + 
Sbjct: 2436 PPPYPGNIRSPV----APPLGPRYAV--FPKDQRGPYPPDVASMGMRPHGFRFGFPGGSH 2489

Query: 330  GTMWSQPR 353
            GTM SQ R
Sbjct: 2490 GTMPSQER 2497

>ENAM_PIG (O97939) Enamelin precursor [Contains: 89 kDa enamelin; 142 kDa|
           enamelin; 155 kDa enamelin; 56 kDa enamelin; 32 kDa
           enamelin; 25 kDa enamelin; 34 kDa enamelin]
          Length = 1142

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
 Frame = +3

Query: 69  SHPRPTHLLPSSSRHRPLHLPTFSAALF-------HDPGGVPPDGYGAINEPEFRAGEPY 227
           + P PT   P      P   P F   LF       H P  +PP GYG         G PY
Sbjct: 141 NEPSPTPTQPEEETQTPQAFPPFGNGLFPYQQPLWHVPHRIPP-GYGRPPTSNEEGGNPY 199

Query: 228 IG 233
            G
Sbjct: 200 FG 201

>VP40_HCMVA (P16753) Capsid protein P40 [Contains: Assemblin (Protease) (EC|
           3.4.21.97); Capsid assembly protein; Gene UL80 protein;
           Gene UL80.5 protein; C-terminal peptide]
          Length = 708

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +3

Query: 96  PSSSRHRPLHLPTFSAALFHDPGGVPPDGYGAINEPEFRAGEPYIGRRYVDEGFPS-DRR 272
           P S+   PL LP++ A+      G P  GY  +    F          YVD  +P   RR
Sbjct: 401 PPSASPAPLPLPSYPASY-----GAPVVGYDQLAARHFAD--------YVDPHYPGWGRR 447

Query: 273 GAFGPDIHDRNMYPPPPT 326
               P +H     PPPP+
Sbjct: 448 YEPAPSLHPSYPVPPPPS 465

>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = +3

Query: 75  PRPTHLLPSSSRHRPLHLPTFSAALFHDPGGVPPDGYGAINEPEFRAGEPYIGRRYVDEG 254
           P P  LL    RHR L+LP+             P  +  ++EP  RA +P++ R      
Sbjct: 838 PSPPPLLKHGPRHRSLNLPSRL-----------PRTWRRLSEPPTRAVKPWVHR------ 880

Query: 255 FPSDRRGAFGPDIHDRNMYPPPPTAG 332
                             YPPPP+AG
Sbjct: 881 -----------------AYPPPPSAG 889

>CN032_MOUSE (Q8BH93) Protein C14orf32 homolog|
          Length = 242

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = -3

Query: 283 PNAPLRSLGKPSSTYLLPM*GSPALNSGSLMAPYPSGGTPPGSWKRAA 140
           PN P RS G P  T   P+ G+P         P P G  PPG+W  AA
Sbjct: 163 PNMPYRSPG-PYPTVPPPVSGAP---------PVPWGTVPPGAWGPAA 200

>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 162 GGVPPDGYGAINEPEFRAGEPYIGRRYVDEGFPSDRRGAFGPDIHDRNMYPPPPTAG 332
           GG    GYG      +  G P   R     G+    RG +GP  + R  Y PPP  G
Sbjct: 318 GGYRGRGYGPPGRGGYGYGPPPGSRG----GYGPPGRGGYGPGPNGRGGYGPPPRGG 370

>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 23/86 (26%), Positives = 29/86 (33%)
 Frame = +3

Query: 93   LPSSSRHRPLHLPTFSAALFHDPGGVPPDGYGAINEPEFRAGEPYIGRRYVDEGFPSDRR 272
            LP+S  H     P  S +L HD    P     A  E +     P  G    D G P   +
Sbjct: 6949 LPASGTHLA---PGHSHSLEHDSPSTPRPSSEACGEAQRLPSAPSGGAPIRDMGHPQGSK 7005

Query: 273  GAFGPDIHDRNMYPPPPTAGTMWSQP 350
                   H     P  P+  + W QP
Sbjct: 7006 QLPSTGGHPGTAQPERPSPDSPWGQP 7031

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
 Frame = +3

Query: 75   PRPTHLLPSSSRHRPLHLPTFSAALFHDPGGVPPDGY-GAINEPEFRAGEPYIGRRYVDE 251
            P+ T ++P      P+ LP +     +     PP  Y G+   P      P +G RY   
Sbjct: 2401 PQDTAVVP-----HPVPLPHWQPESINQAFTRPPPPYPGSTRSPVI----PPLGPRYAV- 2450

Query: 252  GFPSDRRGAFGPDIHDRNMYP-------PPPTAGTMWSQPR 353
             FP D+RG + P++    M P       P    G M SQ R
Sbjct: 2451 -FPKDQRGPYPPEVAGMGMRPHGFRFGFPGAGHGPMPSQDR 2490

>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)|
          Length = 320

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
 Frame = +3

Query: 123 HLPTFSAALFHDPGG-VPPDGYGA---INEPEFRAGEPYIGRRYVDEGFPSDRRGAFGPD 290
           HLP     L H  GG  PP  Y A     EP + A   Y      D  +P   RG   P 
Sbjct: 52  HLPLQQPQLPHAGGGREPPASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPG 111

Query: 291 IHDRNMYPPPPTAG 332
              +   PP    G
Sbjct: 112 RPPQPEQPPAQAKG 125

>LMBR1_XENTR (Q5U4X7) Limb region 1 protein homolog|
          Length = 485

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 163 AVFHLMGMAPLMSQNLGLVNPTLVGDM----WMKAFLVIEGVHLVQIYMIEICI 312
           ++  L    P+MS+ LG+    L+GD     W+  F ++   +L+   M  +C+
Sbjct: 392 SILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVVAYNLMFAVMTTLCL 445

>TS101_HUMAN (Q99816) Tumor susceptibility gene 101 protein|
          Length = 390

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = -3

Query: 337 MVPAVGGGGYIFLSCISGPNAPLRSLGKPSSTYLLPM*GS--------PALNSGSLMAPY 182
           M+   G    +F   IS    P ++ G P+++Y+  M G         P   SG    PY
Sbjct: 131 MIVVFGDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISPYPSGYPPNPSGYPGCPY 190

Query: 181 PSGGTPPGS 155
           P GG  P +
Sbjct: 191 PPGGPYPAT 199

>RAMP2_HUMAN (O60895) Receptor activity-modifying protein 2 precursor (CRLR|
           activity-modifying protein 2) (Calcitonin-receptor-like
           receptor activity-modifying protein 2)
          Length = 175

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 286 GPNAPLRSLGKPSSTYLLPM*GSPALNSGSLMAPYPSGGTP 164
           GP  P   +G+P++  LL + G+      +L  P P+ GTP
Sbjct: 11  GPRLPRTRVGRPAALRLLLLLGAVLNPHEALAQPLPTTGTP 51

>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 75  PRPTHLLPSSSRHRPLHLPTFSAALFHDPGGVPPDGYGAINEPEFRAGEP 224
           P+P HL P +      +LP+ S   +     +  +GYG  ++P    G+P
Sbjct: 605 PQPPHLPPQAQ-----YLPSQSQQRYQPQQDMSQEGYGTRSQPPLAPGKP 649

>LMBR1_CHICK (Q7ZUA6) Limb region 1 protein homolog|
          Length = 488

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 163 AVFHLMGMAPLMSQNLGLVNPTLVGDM----WMKAFLVIEGVHLVQIYMIEICI 312
           ++  L    P+MS+ LG+    L+GD     W+  F ++   +L+   M  +C+
Sbjct: 392 SILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIMTTLCL 445

>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)|
          Length = 264

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 198 EPEFRAGEPYIGRRYVDEGFPS--DRRGAFGPDIHDRNMYPPPP 323
           +P+F   E Y    Y+ E  P    R    G   H + +YPPPP
Sbjct: 14  DPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP 57

>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)|
          Length = 264

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 198 EPEFRAGEPYIGRRYVDEGFPS--DRRGAFGPDIHDRNMYPPPP 323
           +P+F   E Y    Y+ E  P    R    G   H + +YPPPP
Sbjct: 14  DPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP 57

>LMBR1_MOUSE (Q9JIT0) Limb region 1 protein|
          Length = 490

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 163 AVFHLMGMAPLMSQNLGLVNPTLVGDM----WMKAFLVIEGVHLVQIYMIEICI 312
           ++  L    P+MS+ LG+    L+GD     W+  F ++   +L+   M  +C+
Sbjct: 393 SILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIMTTLCL 446

>ENAM_HUMAN (Q9NRM1) Enamelin precursor|
          Length = 1142

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
 Frame = +3

Query: 69  SHPRPTHLLPSSSRHRPLHLPTFSAALF-------HDPGGVPPDGYGAINEPEFRAGEPY 227
           SH +P    P      P   P F   LF         P  +PP GYG         G PY
Sbjct: 143 SHNQPQ---PEEEAQPPQAFPPFGNGLFPYQQPPWQIPQRLPPPGYGRPPISNEEGGNPY 199

Query: 228 IGRRYVDEGFPSDRRGAFGPDIHDRNMYPP----PPTAGTMWSQPRRN 359
            G  +   GF   R   +  ++ +++   P    PP A +  ++P  N
Sbjct: 200 FG-YFGYHGF-GGRPPYYSEEMFEQDFEKPKEEDPPKAESPGTEPTAN 245

>PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)|
          Length = 249

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = +3

Query: 171 PPDGYGAINEPEFRAGEPYIGRRYVDEGFPSDRRGAFGPDIHDRNMYPPPPTAGTMWSQP 350
           PP G     EP F   E  +G  Y     P    G++ P       YPPPP  G  +  P
Sbjct: 17  PPPGSSGGYEPSFAPSE--LGSAYPPPTAPPVG-GSYPPPPPPGGSYPPPPPPGGSYPPP 73

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +3

Query: 90  LLPSSSRHRPLHLPTFSAALFHDPGGVPPDGYGAINEPEF-RAGEPYIGRRYVDEGFPSD 266
           LLP      PL  P  S      PG  P  G+GAIN P    A  P+  RR+V     S 
Sbjct: 654 LLPRGRDRLPLR-PGDSNQRVERPGH-PRGGHGAINAPSAPDASPPHHPRRWV-----SQ 706

Query: 267 RRGAFGPDIHDRNMYPPPP 323
           +R            +PPPP
Sbjct: 707 QRQRLWRQFRVGGGFPPPP 725

>CAD96_DROME (Q9VBW3) Tyrosine kinase receptor Cad96Ca precursor (EC 2.7.10.1)|
           (Cadherin 96Ca) (Tyrosine kinase receptor HD-14)
          Length = 773

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 231 GRRYVDEGFPSDRRGAFGPDIHDRNMYPPPP 323
           G + +  G P+ R G + P +   N++ PPP
Sbjct: 193 GVQSIRNGLPNSRPGGWYPPVPQNNIFGPPP 223

>NDF1_CHICK (P79765) Neurogenic differentiation factor 1 (NeuroD1) (NeuroD)|
          Length = 357

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
 Frame = +3

Query: 87  HLLPSSSRHRPLHLPTFSAALFHDPGGV----------PPDGYGAINEPEFRAGEP 224
           HL P+ +   P   P  S  L   P G           PP  YGA  EP F  G P
Sbjct: 209 HLPPAGAPFAPPPFPYASPGLPSPPYGTMDSSHLFHLKPPHAYGAALEPFFEGGLP 264

>SEC1_MOUSE (P97353) Galactoside 2-alpha-L-fucosyltransferase 3 (EC 2.4.1.69)|
           (GDP-L-fucose:beta-D-galactoside
           2-alpha-L-fucosyltransferase 3) (Alpha(1,2)FT 3)
           (Fucosyltransferase 10) (Secretory blood group protein
           1)
          Length = 368

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 319 GGGYIFLSCISGPNAPLRSLGKPSSTYL 236
           GG  ++L+  + PN+P  ++ KP + YL
Sbjct: 307 GGDTVYLANFTQPNSPFHTVFKPEAAYL 334

>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat|
            protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182
            autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 159  PGGVPPDGYGAIN-EPEFRAGEPYIGRRYVD 248
            P    P+G  ++N  PEFR GEP+ G   +D
Sbjct: 1595 PRAKSPNGSSSVNWPPEFRPGEPWKGYPNID 1625

>TFE3_HUMAN (P19532) Transcription factor E3|
          Length = 743

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 217 PALNSGSLMAPYPSGGTPPGSWKRAAEK 134
           P L+S SL++P P+      +WKR+ ++
Sbjct: 550 PLLSSVSLLSPRPAAAAAASAWKRSPDQ 577

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 261  SDRRGAFGPDIHDRNMYPPPPTAGTMWSQPRRNFDEE 371
            S RRG F    +DR    PP     M+   RR + EE
Sbjct: 995  SSRRGGFDRPSYDRKSDRPPYEGPPMFGGERRTYPEE 1031

>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid|
           salivary glycoprotein G1) (Proline-rich protein G1)
          Length = 309

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
 Frame = +3

Query: 159 PGGVPPDGYGAINEPEFRAGEPYIGRRYVDEGFPSD-RRGAFGPDIHDRNMYPPPPTAGT 335
           P G PP G      P  R G+P        EG PS       GP  H      PPP  G 
Sbjct: 204 PEGPPPQGGNQSQGPPPRPGKP--------EGSPSQGGNKPRGPPPHPGKPQGPPPQEGN 255

Query: 336 MWSQP 350
              +P
Sbjct: 256 KPQRP 260

>GNPI_MESAU (Q64422) Glucosamine-6-phosphate isomerase (EC 3.5.99.6)|
           (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P
           deaminase) (Oscillin)
          Length = 289

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = +3

Query: 72  HPRPTHLLPSSSRHRPLHLPTF------SAALFHDPGGVPPDGYGAINEP 203
           HP  TH+L  ++         F      +  +    GG+ PDG+ A NEP
Sbjct: 100 HPENTHILDGNAADLQAECDAFEEKIRAAGGIELFVGGIGPDGHVAFNEP 149

>ERG3_ORYSA (Q7F9X0) Elicitor-responsive protein 3 (16 kDa phloem protein)|
           (RPP16)
          Length = 144

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 132 TFSAALFHDPGGVPPDGYGAINEPEFRAGEPYIGRRYVDE 251
           T S    +  G +PP  Y  + E E+R GE  +G  +  E
Sbjct: 87  TISLEAIYTEGSIPPTVYNVVKEEEYR-GEIKVGLTFTPE 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,735,518
Number of Sequences: 219361
Number of extensions: 1153342
Number of successful extensions: 3129
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3122
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)