ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBIO1_TREDE (Q73R11) Putative cobalt import ATP-binding protein ... 32 0.53
2TRPA1_CAEEL (Q18297) Transient receptor potential cation channel... 29 5.9
3PAIR1_ORYSA (Q75RY2) Protein PAIR1 (HOMOLOGOUS PAIRING ABERRATIO... 29 5.9
4E75_CHOFU (O01639) Ecdysone-inducible protein E75 29 5.9

>CBIO1_TREDE (Q73R11) Putative cobalt import ATP-binding protein cbiO 1|
          Length = 489

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 247 QVSEDVKTTFQNPASSVQNNVMQLKAVTGEDEGGTPIRDLVAVVQLVTRD 396
           Q+S+ V T FQNP +   N     + V G +  G P   L++ ++ VT D
Sbjct: 79  QLSDSVGTVFQNPRTQFFNTDTDSEIVFGLENRGLPPEQLLSRLEKVTED 128



to top

>TRPA1_CAEEL (Q18297) Transient receptor potential cation channel subfamily A|
           member 1 homolog
          Length = 1193

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/70 (34%), Positives = 31/70 (44%)
 Frame = +1

Query: 211 SRVDAPTRGRSGQVSEDVKTTFQNPASSVQNNVMQLKAVTGEDEGGTPIRDLVAVVQLVT 390
           S + +PTR     VSEDV+ T  N     QN  M + A  G  E    ++   A +  V 
Sbjct: 427 SALKSPTRNTLRIVSEDVRRTMVNMVDRDQNTPMHIVASNGYLEMMQLLQKHGASITQVN 486

Query: 391 RDACASETAL 420
            D    ETAL
Sbjct: 487 ED---EETAL 493



to top

>PAIR1_ORYSA (Q75RY2) Protein PAIR1 (HOMOLOGOUS PAIRING ABERRATION IN RICE|
           MEIOSIS 1 protein)
          Length = 492

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 14/62 (22%)
 Frame = +1

Query: 238 RSGQVS-EDVKTTFQNPAS----------SVQNNVMQLKAVTGE---DEGGTPIRDLVAV 375
           RSGQV+ EDV+  FQ+ AS          SVQ++VMQL     E   D G   IR  +AV
Sbjct: 139 RSGQVTNEDVERKFQHLASSVHKMGMVVDSVQSDVMQLNRAMKEASLDSGS--IRQKIAV 196

Query: 376 VQ 381
           ++
Sbjct: 197 LE 198



to top

>E75_CHOFU (O01639) Ecdysone-inducible protein E75|
          Length = 690

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 424 TATLSPMHTHPSSPAERRQQGLGWACLPRPLQSP 323
           T +  PMH HP SPA         A  PRPL++P
Sbjct: 575 TPSPQPMHPHPGSPAHPAHP----AHSPRPLRAP 604


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,212,779
Number of Sequences: 219361
Number of extensions: 771804
Number of successful extensions: 2329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2329
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top