ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12a10 |
|---|---|
| Clone Library Name | barley_pub |
>LONH1_MAIZE (P93647) Lon protease homolog 1, mitochondrial precursor (EC| 3.4.21.-) Length = 885 Score = 128 bits (321), Expect = 4e-30 Identities = 62/71 (87%), Positives = 66/71 (92%) Frame = +3 Query: 102 PVELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSET 281 PVELP RLA+LPFRNKVLLPGAIVRIRCT PSSVKLVEQELWQ+E+KGLIGVLPVRDSE Sbjct: 5 PVELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEA 64 Query: 282 AAVGSILPPGV 314 AVGS+L PGV Sbjct: 65 TAVGSLLSPGV 75
>LONH1_SPIOL (O04979) Lon protease homolog 1, mitochondrial precursor (EC| 3.4.21.-) Length = 875 Score = 110 bits (276), Expect = 7e-25 Identities = 55/70 (78%), Positives = 63/70 (90%), Gaps = 1/70 (1%) Frame = +3 Query: 105 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRD-SET 281 VELP RL IL FRNKVLLPGAI+RIRCT+PSSVKLVEQELWQRE+KGLIG++PVRD SE+ Sbjct: 5 VELPSRLGILAFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGIVPVRDASES 64 Query: 282 AAVGSILPPG 311 A+V +L PG Sbjct: 65 ASVAPVLYPG 74
>LONH1_ARATH (O64948) Lon protease homolog 1, mitochondrial precursor (EC| 3.4.21.-) Length = 888 Score = 107 bits (268), Expect = 6e-24 Identities = 52/70 (74%), Positives = 64/70 (91%), Gaps = 1/70 (1%) Frame = +3 Query: 105 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVR-DSET 281 VELP RLAILPFRNKVLLPGAI+RIRCT+ SSV LVEQELWQ+E+KGLIG+LPVR D+E Sbjct: 5 VELPSRLAILPFRNKVLLPGAIIRIRCTSHSSVTLVEQELWQKEEKGLIGILPVRDDAEG 64 Query: 282 AAVGSILPPG 311 +++G+++ PG Sbjct: 65 SSIGTMINPG 74
>LON2_MYXXA (P36774) ATP-dependent protease La 2 (EC 3.4.21.53)| Length = 826 Score = 32.7 bits (73), Expect = 0.24 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = +3 Query: 108 ELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSETAA 287 ++P L ILP RN V PG ++ + ++ L++ + D +IGV+ R +E Sbjct: 27 DIPQVLPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAV---RDDQVIGVVTQRRAEEED 83 Query: 288 VGS 296 G+ Sbjct: 84 PGA 86
>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM| domains (Molecule interacting with CasL protein 1) Length = 1067 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -2 Query: 142 RNGSMASRPGSSTGASAMAADALLWCVRRTAGGTGIRVEE 23 RN +TG++ + L WC +TAG G+ V + Sbjct: 493 RNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVHVSD 532
>HV1D_HUMAN (P01760) Ig heavy chain V-I region WOL| Length = 124 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = +3 Query: 147 KVLLPGAIVRIRCTTPSSVKLVEQELWQRE--DKGL--IGVLPVR-DSETAAVGSIL 302 +V PG+ VR+ C T + + LW R+ KGL +G +P+R + E GS++ Sbjct: 10 EVKKPGSSVRVSCKTSGGTFVDYKGLWVRQAPGKGLEWVGQIPLRFNGEVKNPGSVV 66
>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A| (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and leucine-rich repeat protein 11) Length = 1146 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +2 Query: 5 PSPPLLFLHPNSCSASRTPHTPQ 73 PSPPLL L P+ SA TP + Q Sbjct: 743 PSPPLLLLPPSPSSAPPTPPSAQ 765
>ANIA_NEIMA (Q9JTB8) Copper-containing nitrite reductase precursor (EC 1.7.2.1)| Length = 386 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 165 AIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSETAAV 290 AIV + P S LV+ +++ +KG +G L V +E + Sbjct: 308 AIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEI 349
>ANIA_NEIMB (Q9JYE1) Copper-containing nitrite reductase precursor (EC 1.7.2.1)| Length = 390 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 165 AIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSETAAV 290 AIV + P S LV+ +++ +KG +G L V +E + Sbjct: 312 AIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEI 353
>SSBW_PSEPU (Q8VMM4) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 180 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -3 Query: 300 GSNQQPQSQSPAREAPQ 250 GSNQQP+ Q+P ++ PQ Sbjct: 129 GSNQQPRQQAPRQQRPQ 145
>ANIA_NEIGO (Q02219) Copper-containing nitrite reductase precursor (EC 1.7.2.1)| (Major outer membrane protein Pan 1) Length = 392 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 165 AIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSETAAV 290 AIV + P S LV+ +++ +KG +G L V +E + Sbjct: 312 AIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEI 353
>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)| Length = 780 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/56 (26%), Positives = 18/56 (32%) Frame = +2 Query: 140 PQQGAPPGRHRADPMHHPXXXXXXXXXXXXXXXXXSDWGASRAGL*DCGCWFDPAA 307 P QG PP H +HHP D +G C W D +A Sbjct: 299 PPQGPPPPYHAHPHLHHPELLPHTQSLSLAQTGLEEDGEMEDSGGKHCCRWIDCSA 354
>RNZ_CHLPN (Q9Z9F6) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 307 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 180 RCTTPSSVKLVEQELWQREDKGLIGVLPVRDSETAAVGS 296 R T P ++K + +EL R +GLI +RD E + GS Sbjct: 149 RITEPDTIKFLPKELESRGIRGLIIQDLIRDQEISIGGS 187 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,887,651 Number of Sequences: 219361 Number of extensions: 706560 Number of successful extensions: 2439 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2438 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
