>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 24/69 (34%), Positives = 41/69 (59%)
 Frame = +1

Query: 247 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIVDRSIGEXXXXXXXXXXXXXXXKSLLIR 426
           NPKAFA +SA +  R   R+ +++ ++ H+P+VDR+  E               KS LI+
Sbjct: 41  NPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIQ 100

Query: 427 CLVKHYTKQ 453
           CL++++T+Q
Sbjct: 101 CLIRNFTRQ 109

>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 247 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIVDRSIGEX-XXXXXXXXXXXXXXKSLLI 423
           NPKAFA  SA +  R   R+A+I Q++LHVP+VDR+  E                KS LI
Sbjct: 32  NPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPDEAPPPVIVAVMGPPGTGKSTLI 91

Query: 424 RCLVKHYTK 450
           + LV+ Y+K
Sbjct: 92  KSLVRRYSK 100

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
 Frame = +1

Query: 142 VEQPRKAHRVAKSXXXXXXXXXXXXXXXXXXXXXXNPKAFAFRSATKAKRLQSRSAEIEQ 321
           +EQ  K HR AK                       N KAFA  +  K  R   RS+++ +
Sbjct: 1   MEQSNKQHRKAKEKNTAKKKLHTQGH---------NAKAFAVAAPGKMARTMQRSSDVNE 51

Query: 322 RRLHVPIVDRS-IGEXXXXXXXXXXXXXXXKSLLIRCLVKHYTK 450
           R+LHVP+VDR+   +               K+ LIR LV+  TK
Sbjct: 52  RKLHVPMVDRTPEDDPPPFIVAVVGPPGTGKTTLIRSLVRRMTK 95

>ROGF1_ARATH (Q93ZY2) Rop guanine nucleotide exchange factor 1 (RopGEF1) (Kinase|
           partner protein-like) (KPP-like)
          Length = 548

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 39  HSPPFRRPSLSAAAKTPRALPP 104
           H  PF  P+LS A+++PR  PP
Sbjct: 486 HGSPFATPALSVASRSPRRAPP 507

>R4RL1_RAT (Q80WD0) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor|
           homolog 2) (Nogo-66 receptor-related protein 3) (NgR3)
           (Nogo receptor-like 2)
          Length = 445

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 411 LSNLRRSLDYDNKRRWFPN*AIHDWHMETALFNF 310
           L NL R L ++N+ +W  + A HD H  T LF F
Sbjct: 196 LVNLDRLLLHENQLQWVHHKAFHDLHRLTTLFLF 229

>R4RL1_MOUSE (Q8K0S5) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor|
           homolog 2) (Nogo-66 receptor-related protein 3) (NgR3)
           (Nogo receptor-like 2)
          Length = 445

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 411 LSNLRRSLDYDNKRRWFPN*AIHDWHMETALFNF 310
           L NL R L ++N+ +W  + A HD H  T LF F
Sbjct: 196 LVNLDRLLLHENQLQWVHHKAFHDLHRLTTLFLF 229

>BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 precursor|
          Length = 1584

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 6    ITNAAPKTLALHSPPFRRPSLSAAAKTPRALPPQNPP 116
            ++ A   +L   SPP R+P      + P A PP  PP
Sbjct: 1380 LSTAPEASLPARSPPSRQPPSGGPPEAPPAQPPPPPP 1416

>TNR11_HUMAN (Q9Y6Q6) Tumor necrosis factor receptor superfamily member 11A|
           precursor (Receptor activator of NF-KB) (Osteoclast
           differentiation factor receptor) (ODFR) (CD265 antigen)
          Length = 616

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 285 EAATISISGN*TTPSPCANRGSLNWGTTSFCCR 383
           +A    ++GN TTP  CA     +W     CCR
Sbjct: 96  KALVAVVAGNSTTPRRCACTAGYHWSQDCECCR 128

>SLAP_BACST (P35825) S-layer protein precursor (Surface layer protein)|
          Length = 1228

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 258 FCLPFSNKSEAATISISGN*TTPSPCANRGSLNWGTTSFCCRSPRTSAGWKVAADKVSSK 437
           F + FS + + ++ S+ G   T     N G ++ GT +    +P+T A  KV A  V+  
Sbjct: 783 FTIQFSEELKTSSGSLVGGKVTVEKLTNNGWVDAGTGTTVSVAPKTDANGKVTAAVVTLT 842

Query: 438 AL 443
            L
Sbjct: 843 GL 844


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,780,859
Number of Sequences: 219361
Number of extensions: 733618
Number of successful extensions: 3098
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3094
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)