ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl14a04 |
|---|---|
| Clone Library Name | barley_pub |
>SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)| Length = 580 Score = 31.2 bits (69), Expect = 0.72 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +3 Query: 15 PLPLPRPAVFQIQIHRPCRSLLHFCKRLFL-----LSPAQSSLAKPRDKDSRELSRRPAP 179 P P P+ Q Q +P RS +RL LSP S + R S +LSR + Sbjct: 434 PRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRASSG 493 Query: 180 SPFSRYSGRPGRTIRARIAPPQQGPCRSR 266 S ++ S +PG T+ ++ PP QG S+ Sbjct: 494 SSPNQAS-KPGATLASQPRPPVQGRSTSQ 521
>HSP1_TACAC (P35311) Sperm protamine P1| Length = 68 Score = 30.8 bits (68), Expect = 0.94 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -2 Query: 106 RRKRRLQKWRSERHGRWI*IWKTAGRGRGKGRVR 5 RR+RR ++ RS R GR K RGRG+G+ R Sbjct: 15 RRRRRSRRQRSRRGGRQTGPRKITRRGRGRGKSR 48
>ARHGF_HUMAN (O94989) Rho guanine nucleotide exchange factor 15 (Vsm-RhoGEF)| Length = 841 Score = 30.0 bits (66), Expect = 1.6 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Frame = +3 Query: 27 PRPAVFQIQIHRPCRSLLHFCKRLFLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGR 206 P P I P SL K LL P+ S + S P PSP SR S Sbjct: 54 PTPMCTPIFWEPPAASL----KPPALLPPSASRASLDSQTSPDSPSSTPTPSPVSRRSAS 109 Query: 207 PGRTIRARIAPPQQ--GPC 257 P R+ + PP+ PC Sbjct: 110 PEPAPRSPVPPPKPSGSPC 128
>CDA_CRYNE (Q53I51) Chitin deacetylase precursor (EC 3.5.1.41)| Length = 410 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Frame = +3 Query: 108 SPAQSSLAKPRDKDSRELSRRPAPSP----FSRYSGRPGRTIRARIAP 239 +P S +PRD D +L RR AP P + Y PG T P Sbjct: 19 APFPESWLQPRDSDVSQLFRRGAPDPKASDYLSYYPSPGSTPNVSTIP 66
>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)| (YANK3) Length = 486 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 144 KDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQGP 254 K S++L R P P+P SR + P R A P GP Sbjct: 442 KRSQDLPREPLPAPESRDAAEPVEDEAERSALPMCGP 478
>RHO_SHIFL (P0AG33) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_SALTY (P0A295) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_SALTI (P0A296) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_ECOLI (P0AG30) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_ECOL6 (P0AG31) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_ECO57 (P0AG32) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_BUCBP (Q89A22) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSSDSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_BUCAP (O51891) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTISGKIRPPKEG 107
>RHO_BUCAI (P57652) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +3 Query: 99 FLLSPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 FL S S LA P D +PS R++ R G TI +I PP++G Sbjct: 64 FLRSADSSYLAGPDDI-------YVSPSQIRRFNLRTGDTIAGKIRPPKEG 107
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 28.5 bits (62), Expect = 4.7 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +3 Query: 141 DKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQGPCRSR 266 +K +REL+ A +P R S RPG+ I PP Q P S+ Sbjct: 378 EKPARELNGSEAATP--RDSPRPGKPDERDIWPPAQAPTSSQ 417
>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)| Length = 2829 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +3 Query: 108 SPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG 251 +P SS R S RP+P P SR PGR I+P + G Sbjct: 2289 TPGGSSKGNSRSGSRDSASSRPSPQPLSRPLQSPGRN---SISPGKNG 2333
>RIN1_RAT (P97680) Ras and Rab interactor 1 (Ras interaction/interference| protein 1) Length = 774 Score = 28.1 bits (61), Expect = 6.1 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +3 Query: 6 LTLPLPLPRPAVFQIQIHRPCRSLLHFCKRLFLLSPAQSSLAKPRDKDSRELSRRPAPSP 185 L LPLPLPR A+ Q H+ ++ H + S + ++ + R ++ ++ R A SP Sbjct: 154 LLLPLPLPR-AIHQAATHKELEAISHLGMEFW--SSSLNTKNQQRPSEAPQIPRLKARSP 210
>NAGZ_PSEAE (Q9HZK0) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 332 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +3 Query: 114 AQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQGP 254 A S +A P D S E RR PF+R +G+ + A + PQ P Sbjct: 171 ADSHVAIPEDARSLEEIRRSDLVPFARLAGQLDALMPAHVIYPQVDP 217
>KCNH4_RAT (Q9R1T9) Potassium voltage-gated channel subfamily H member 4| (Voltage-gated potassium channel subunit Kv12.3) (Ether-a-go-go-like potassium channel 1) (ELK channel 1) (rElk1) (Brain-specific eag-like channel 2) (BEC2) Length = 1017 Score = 27.7 bits (60), Expect = 8.0 Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Frame = +3 Query: 21 PLPRPAVF----QIQIHRPCRSLLHFCKRLFLLSPAQSSLA----KPRDKDSRELSRRPA 176 P P PA+ +H P R + K LL+P + PR D E S A Sbjct: 779 PTPSPALAGRGSSPSLHGPPRGSAAW-KPPQLLTPPLGTFGPPDLSPRIVDGIEDSSNTA 837 Query: 177 PSPFSRYSGRPGRTIRARIAPPQQGPCRSR 266 +P R+S RP T R R P GP SR Sbjct: 838 EAPTFRFSKRPEPT-RTRSQAPLSGPRLSR 866
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 27.7 bits (60), Expect = 8.0 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +3 Query: 108 SPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQG--PCRSR 266 S A+++ A PR S+ LSRR +PSP + RPG PP +G P R++ Sbjct: 1240 SAARNASASPR---SQSLSRRESPSP--SHQARPG-------VPPPRGVPPARAQ 1282
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 27.7 bits (60), Expect = 8.0 Identities = 19/54 (35%), Positives = 20/54 (37%) Frame = +3 Query: 108 SPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQGPCRSRS 269 S SS PR +DSR RP P R GR P GP RS Sbjct: 243 STDNSSAQAPRQEDSRPARARPGPPTRGRRRGR---------RPAAPGPASRRS 287
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 27.7 bits (60), Expect = 8.0 Identities = 19/54 (35%), Positives = 20/54 (37%) Frame = +3 Query: 108 SPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQGPCRSRS 269 S SS PR +DSR RP P R GR P GP RS Sbjct: 243 STDNSSAQAPRQEDSRPARARPGPPTRGRRRGR---------RPAAPGPASRRS 287
>CENG3_MOUSE (Q8VHH5) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 3) (AGAP-3) (MR1-interacting protein) (MRIP-1) (CRAM-associated GTPase) (CRAG) Length = 910 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +2 Query: 149 LAGALAPPRSVAVLAV*RSTRAHNPRAHRSAAAGAMPQP 265 L GA P S + ST H+ R H SA AG+ P P Sbjct: 493 LGGATGAPHSAS------STSLHSERPHSSAWAGSRPGP 525
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 27.7 bits (60), Expect = 8.0 Identities = 21/59 (35%), Positives = 23/59 (38%) Frame = -2 Query: 265 RLRHGPCCGGAMRARIVRPGRPLYRENGDGAGXXXXXXXXXXRGFARED*AGERRKRRL 89 RL P A +AR P RE G GAG G E+ GERR R L Sbjct: 396 RLPAAPRAAPAAQARACSPEP---REEGRGAGLGVAAGETAGWGAGSEEGRGERRARLL 451
>IBP6_HUMAN (P24592) Insulin-like growth factor-binding protein 6 precursor| (IGFBP-6) (IBP-6) (IGF-binding protein 6) Length = 240 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +3 Query: 108 SPAQSSLAKPRDKDSRELSRRPAPSPFSRYSGRPGRTIRARIAPPQQGPCR 260 S Q+ A+P+D + R+ R P S P + A + + GPCR Sbjct: 120 SKPQAGTARPQDVNRRDQQRNPGTST------TPSQPNSAGVQDTEMGPCR 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,632,158 Number of Sequences: 219361 Number of extensions: 552035 Number of successful extensions: 2167 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2128 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
