Clone Information

BLAST Search Result

Clone Name	bastl20a03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-relate...	129	5e-30
2	AP4B1_HUMAN (Q9Y6B7) AP-4 complex subunit beta-1 (Adapter-relate...	125	7e-29
3	AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related ...	108	1e-23
4	AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-relate...	108	1e-23
5	AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-relate...	108	1e-23
6	AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related ...	107	2e-23
7	AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-relate...	107	2e-23
8	AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-relate...	107	2e-23
9	AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adapti...	101	1e-21
10	AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-relate...	101	1e-21
11	AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adapti...	97	3e-20
12	AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-relate...	75	1e-13
13	AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-relate...	75	1e-13
14	AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-relate...	74	2e-13
15	AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Cl...	73	5e-13
16	AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-relate...	71	1e-12
17	AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-relate...	71	1e-12
18	AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Ad...	67	3e-11
19	AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Ad...	65	8e-11
20	AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Ad...	59	1e-08
21	AP3D_DROME (P54362) AP-3 complex subunit delta (Delta-adaptin) (...	44	3e-04
22	COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (B...	42	0.001
23	COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (B...	40	0.005
24	AP2A2_HUMAN (O94973) AP-2 complex subunit alpha-2 (Adapter-relat...	39	0.011
25	AP3D1_HUMAN (O14617) AP-3 complex subunit delta-1 (Adapter-relat...	39	0.011
26	AP3D1_BOVIN (Q865S1) AP-3 complex subunit delta-1 (Adapter-relat...	38	0.018
27	AP3D1_MOUSE (O54774) AP-3 complex subunit delta-1 (Adapter-relat...	38	0.018
28	AP2A2_MOUSE (P17427) AP-2 complex subunit alpha-2 (Adapter-relat...	37	0.023
29	AP2A2_RAT (P18484) AP-2 complex subunit alpha-2 (Adapter-related...	37	0.023
30	AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Cl...	37	0.031
31	COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Bet...	35	0.15
32	COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (B...	35	0.15
33	COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (B...	35	0.15
34	AP2A_DROME (P91926) AP-2 complex subunit alpha (Alpha-adaptin)	34	0.20
35	AP2A1_MOUSE (P17426) AP-2 complex subunit alpha-1 (Adapter-relat...	34	0.26
36	AP2A1_HUMAN (O95782) AP-2 complex subunit alpha-1 (Adapter-relat...	34	0.26
37	COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (B...	33	0.34
38	AP3D_YEAST (Q08951) AP-3 complex subunit delta (Adapter-related ...	33	0.58
39	COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat ...	32	0.98
40	REEP1_MOUSE (Q8BGH4) Receptor expression-enhancing protein 1	31	2.2
41	REEP1_HUMAN (Q9H902) Receptor expression-enhancing protein 1	31	2.2
42	IMB3_SCHPO (O74476) Importin beta-3 subunit	31	2.2
43	PUR4_VIBPA (Q87RW0) Phosphoribosylformylglycinamidine synthase (...	30	2.9
44	AP1G2_HUMAN (O75843) AP-1 complex subunit gamma-2 (Adapter-relat...	30	3.7
45	AP1G2_MOUSE (O88512) AP-1 complex subunit gamma-2 (Adapter-relat...	29	6.4
46	PUR4_VIBVY (Q7MN70) Phosphoribosylformylglycinamidine synthase (...	29	8.3
47	PUR4_VIBVU (Q8DF81) Phosphoribosylformylglycinamidine synthase (...	29	8.3
48	BLM10_YEAST (P43583) Proteasome activator BLM10 (Bleomycin resis...	29	8.3

>AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-related protein|
           complex 4 beta-1 subunit) (Beta subunit of AP-4) (AP-4
           adapter complex beta subunit)
          Length = 739

 Score =  129 bits (324), Expect = 5e-30
 Identities = 68/136 (50%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
 Frame = +2

Query: 101 DLKQQLRQLAGSRAPDADDQR-RDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKM 277
           D+ ++L++   +    AD  R R+V +RVI  MT G+D+S  F EMV  SAT D+V KK+
Sbjct: 8   DVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKL 67

Query: 278 CYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTT 457
            YLY+G +A   PDLALL IN L +DC D +P +RGLALRS+CSLR+P + EY+  P+  
Sbjct: 68  VYLYMGTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPVVN 127

Query: 458 GLKDPSAYVRMVAAVG 505
           GL+D ++YVR VA +G
Sbjct: 128 GLRDKASYVRRVAVLG 143

to top

>AP4B1_HUMAN (Q9Y6B7) AP-4 complex subunit beta-1 (Adapter-related protein|
           complex 4 beta 1 subunit) (Beta subunit of AP-4) (AP-4
           adapter complex beta subunit)
          Length = 739

 Score =  125 bits (314), Expect = 7e-29
 Identities = 66/136 (48%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
 Frame = +2

Query: 101 DLKQQLRQLAGSRAPDADDQR-RDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKM 277
           D+ ++L++   +    AD  R R+V +RVI  MT G+D+S  F EMV  SAT D+V KK+
Sbjct: 8   DVVKELKKALCNPHIQADRLRYRNVIQRVIRYMTQGLDMSGVFMEMVKASATVDIVQKKL 67

Query: 278 CYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTT 457
            YLY+  +A   PDLALL IN L +DC D +P +RGLALRS+CSLR+P + EY+  P+  
Sbjct: 68  VYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILN 127

Query: 458 GLKDPSAYVRMVAAVG 505
           GL+D ++YVR V  +G
Sbjct: 128 GLRDKASYVRRVVVLG 143

to top

>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta large
          Length = 949

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/132 (40%), Positives = 83/132 (62%)
 Frame = +2

Query: 107 KQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYL 286
           K ++ +L      D  +++++  K+VI+ MT G DVSA F ++V C  T ++ LKK+ YL
Sbjct: 12  KGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYL 71

Query: 287 YVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLK 466
           Y+  +A++ PD+A++ +N   +DC D +P IR LA+R++  +RV  + EYL  PL   LK
Sbjct: 72  YLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 131

Query: 467 DPSAYVRMVAAV 502
           D   YVR  AAV
Sbjct: 132 DEDPYVRKTAAV 143

to top

>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 949

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/132 (40%), Positives = 83/132 (62%)
 Frame = +2

Query: 107 KQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYL 286
           K ++ +L      D  +++++  K+VI+ MT G DVSA F ++V C  T ++ LKK+ YL
Sbjct: 12  KGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYL 71

Query: 287 YVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLK 466
           Y+  +A++ PD+A++ +N   +DC D +P IR LA+R++  +RV  + EYL  PL   LK
Sbjct: 72  YLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 131

Query: 467 DPSAYVRMVAAV 502
           D   YVR  AAV
Sbjct: 132 DEDPYVRKTAAV 143

to top

>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein|
           complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor
           protein complex AP-1 beta-1 subunit) (Golgi adaptor
           HA1/AP1 adaptin beta subunit) (Clathrin assembly protein
           complex 1 beta larg
          Length = 943

 Score =  108 bits (269), Expect = 1e-23
 Identities = 53/132 (40%), Positives = 83/132 (62%)
 Frame = +2

Query: 107 KQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYL 286
           K ++ +L      D  +++++  K+VI+ MT G DVSA F ++V C  T ++ LKK+ YL
Sbjct: 12  KGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYL 71

Query: 287 YVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLK 466
           Y+  +A++ PD+A++ +N   +DC D +P IR LA+R++  +RV  + EYL  PL   LK
Sbjct: 72  YLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 131

Query: 467 DPSAYVRMVAAV 502
           D   YVR  AAV
Sbjct: 132 DEDPYVRKTAAV 143

to top

>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  107 bits (266), Expect = 2e-23
 Identities = 54/137 (39%), Positives = 85/137 (62%)
 Frame = +2

Query: 92  EVSDLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLK 271
           E+ +LK +L         +  ++R++  K+VI+ MT G DVS+ F ++V C  T ++ LK
Sbjct: 14  EIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELK 66

Query: 272 KMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPL 451
           K+ YLY+  +A++ PD+A++ +N   +DC D +P IR LA+R++  +RV  + EYL  PL
Sbjct: 67  KLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPL 126

Query: 452 TTGLKDPSAYVRMVAAV 502
              LKD   YVR  AAV
Sbjct: 127 RKCLKDEDPYVRKTAAV 143

to top

>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  107 bits (266), Expect = 2e-23
 Identities = 54/137 (39%), Positives = 85/137 (62%)
 Frame = +2

Query: 92  EVSDLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLK 271
           E+ +LK +L         +  ++R++  K+VI+ MT G DVS+ F ++V C  T ++ LK
Sbjct: 14  EIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELK 66

Query: 272 KMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPL 451
           K+ YLY+  +A++ PD+A++ +N   +DC D +P IR LA+R++  +RV  + EYL  PL
Sbjct: 67  KLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPL 126

Query: 452 TTGLKDPSAYVRMVAAV 502
              LKD   YVR  AAV
Sbjct: 127 RKCLKDEDPYVRKTAAV 143

to top

>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
          Length = 937

 Score =  107 bits (266), Expect = 2e-23
 Identities = 54/137 (39%), Positives = 85/137 (62%)
 Frame = +2

Query: 92  EVSDLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLK 271
           E+ +LK +L         +  ++R++  K+VI+ MT G DVS+ F ++V C  T ++ LK
Sbjct: 14  EIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELK 66

Query: 272 KMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPL 451
           K+ YLY+  +A++ PD+A++ +N   +DC D +P IR LA+R++  +RV  + EYL  PL
Sbjct: 67  KLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPL 126

Query: 452 TTGLKDPSAYVRMVAAV 502
              LKD   YVR  AAV
Sbjct: 127 RKCLKDEDPYVRKTAAV 143

to top

>AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin|
           assembly protein large beta-1 chain) (Clathrin assembly
           protein complex 1 beta-1 large chain)
          Length = 683

 Score =  101 bits (252), Expect = 1e-21
 Identities = 50/115 (43%), Positives = 73/115 (63%)
 Frame = +2

Query: 158 QRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPDLALLTI 337
           +R D  KR I+ MT G DVS+ F +++   AT D+ LKK+ YLY+  +A+ HPDL +L +
Sbjct: 33  ERIDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDITLKKLVYLYLINYAKTHPDLCILAV 92

Query: 338 NFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAAV 502
           N   +D  + +PT+R LA+R++  +RV  ++ YL  PL   LKD   YVR  AAV
Sbjct: 93  NTFVKDSEEYNPTLRALAIRTMGCIRVNKIIGYLADPLRKALKDEHPYVRKAAAV 147

to top

>AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-related protein|
           complex 2 beta-1 subunit) (Beta-adaptin) (Plasma
           membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin
           assembly protein complex 2 beta large chain) (AP105B)
           (Fragment)
          Length = 236

 Score =  101 bits (251), Expect = 1e-21
 Identities = 49/109 (44%), Positives = 72/109 (66%)
 Frame = +2

Query: 176 KRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPDLALLTINFLQRD 355
           K+VI+ MT G DVS+ F ++V C  T ++ LKK+ YLY+  +A++ PD+A++ +N   +D
Sbjct: 3   KKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKD 62

Query: 356 CRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAAV 502
           C D +P IR LA+R++  +RV  + EYL  PL   LKD   YVR  AAV
Sbjct: 63  CEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAV 111

to top

>AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin|
           assembly protein large beta-1 chain) (Clathrin assembly
           protein complex 1 beta-1 large chain)
          Length = 726

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 51/132 (38%), Positives = 76/132 (57%)
 Frame = +2

Query: 107 KQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYL 286
           K +L +L           R+D  K+ I  MT G DVS+ F +++   AT DV  KK+ YL
Sbjct: 25  KGELSELRTGLVSQYPQTRKDAIKKTIQQMTLGKDVSSLFPDVLKNIATIDVEQKKLVYL 84

Query: 287 YVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLK 466
           YV  +A  HP+L +L +N    D +D +P IR +A+R++  +RV  ++EY+ TPL   L 
Sbjct: 85  YVMNYAETHPELCILAVNTFITDAQDPNPLIRCMAIRTMSMIRVDKILEYIETPLRRTLH 144

Query: 467 DPSAYVRMVAAV 502
           D +AYVR  A +
Sbjct: 145 DDNAYVRKTAVI 156

to top

>AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1091

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
 Frame = +2

Query: 98  SDLK--QQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLK 271
           SDLK  + L+Q+  S   + D  + D  KR++  +  G + S  F  +V   A+ ++ +K
Sbjct: 39  SDLKKNEDLKQMLES---NKDSAKLDAMKRIVGMIAKGKNASELFPAVVKNVASKNIEIK 95

Query: 272 KMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPL 451
           K+ Y+Y+  +A    DLALL+I+  QR  +D +  IR  ALR L S+RVP +V  ++  +
Sbjct: 96  KLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPIIVPIMMLAI 155

Query: 452 TTGLKDPSAYVRMVAA 499
                D S YVR  AA
Sbjct: 156 KEASADLSPYVRKNAA 171

to top

>AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1094

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
 Frame = +2

Query: 98  SDLK--QQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLK 271
           SDLK  + L+Q+  S   + D  + D  KR++  +  G + S  F  +V   A+ ++ +K
Sbjct: 39  SDLKKNEDLKQMLES---NKDSAKLDAMKRIVGMIAKGKNASELFPAVVKNVASKNIEIK 95

Query: 272 KMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPL 451
           K+ Y+Y+  +A    DLALL+I+  QR  +D +  IR  ALR L S+RVP +V  ++  +
Sbjct: 96  KLVYVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPIIVPIMMLAI 155

Query: 452 TTGLKDPSAYVRMVAA 499
                D S YVR  AA
Sbjct: 156 KEASADLSPYVRKNAA 171

to top

>AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-related protein|
           complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor
           protein complex AP-3 beta-1 subunit) (Clathrin assembly
           protein complex 3 beta-1 large chain)
          Length = 1105

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 46/133 (34%), Positives = 70/133 (52%)
 Frame = +2

Query: 101 DLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMC 280
           DLKQ L         + D  + D  KR++  +  G + S  F  +V   A+ ++ +KK+ 
Sbjct: 46  DLKQMLES-------NKDSAKLDAMKRIVGMIAKGKNASELFPAVVKNVASKNIEIKKLV 98

Query: 281 YLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTG 460
           Y+Y+  +A    DLALL+I+  QR  +D +  IR  ALR L S+RVP +V  ++  +   
Sbjct: 99  YVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPIIVPVMMLAIKEA 158

Query: 461 LKDPSAYVRMVAA 499
             D S YVR  AA
Sbjct: 159 SADLSPYVRKNAA 171

to top

>AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Clathrin|
           assembly protein large beta chain) (Clathrin assembly
           protein complex 2 beta large chain)
          Length = 677

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 37/117 (31%), Positives = 64/117 (54%)
 Frame = +2

Query: 155 DQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPDLALLT 334
           ++R    K+ I+ ++ G D+S+ F  ++    ++++ LKK+CYLY+ ++A   P  A   
Sbjct: 29  NKRISALKKAIAGISYGYDMSSLFPSVISSMESNNLELKKLCYLYLKIYASVKPTEAKRA 88

Query: 335 INFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAAVG 505
           +  +  D    +P IR LALR+L S+ + N     + P+   L D   YVR  AA+G
Sbjct: 89  VKLILNDIYSSNPMIRSLALRTLTSVNIKNFWVAAMDPIVRLLDDTDPYVRKTAAIG 145

to top

>AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (Clathrin assembly
           protein complex 3 beta-2 large chain)
          Length = 1082

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 40/116 (34%), Positives = 64/116 (55%)
 Frame = +2

Query: 152 DDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPDLALL 331
           D  + +  KR+++ +  G + S  F  +V   A  ++ +KK+ Y+Y+  +A    DLALL
Sbjct: 51  DSLKLEAMKRIVAMIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALL 110

Query: 332 TINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAA 499
           +I+  QR  +D +  IR  ALR L S+RVP +V  ++  +     D S YVR  AA
Sbjct: 111 SISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAA 166

to top

>AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-related protein|
           complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor
           protein complex AP-3 beta-2 subunit) (AP-3 complex
           beta-2 subunit) (Clathrin assembly protein complex 3
           beta-2 large chain) (Neu
          Length = 1082

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 40/116 (34%), Positives = 64/116 (55%)
 Frame = +2

Query: 152 DDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPDLALL 331
           D  + +  KR+++ +  G + S  F  +V   A  ++ +KK+ Y+Y+  +A    DLALL
Sbjct: 51  DSLKLEAMKRIVAMIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALL 110

Query: 332 TINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAA 499
           +I+  QR  +D +  IR  ALR L S+RVP +V  ++  +     D S YVR  AA
Sbjct: 111 SISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAA 166

to top

>AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 781

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
 Frame = +2

Query: 164 RDVFKRVISCMTAG---IDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPDLALLT 334
           RD  KRV+S M +G   I++   F ++V    + DV +++M  +Y+  +A  +P+LALL+
Sbjct: 60  RDGMKRVMSLMGSGDSSIELETHFADIVKNIGSDDVKVRRMVSVYLLRYAETNPNLALLS 119

Query: 335 INFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAAV 502
           IN +QR   D +P +R LAL++L  + + +L   ++  L   + D S  VR   A+
Sbjct: 120 INSIQRSLSDSNPDVRALALKTLSDINIASLYPIILHSLKKTVIDSSEVVRCQVAM 175

to top

>AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 809

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
 Frame = +2

Query: 110 QQLRQLAGSRAPDADDQRRDVFKRVISCMTA---GIDVSAAFGEMVLCSATSDVVLKKMC 280
           QQL  L  SR      + RD  KR+IS M +    IDV   F ++V    T+D  +K++ 
Sbjct: 45  QQLVTLLNSRN---SREVRDAMKRIISIMASDDDSIDVQLYFADVVKNITTNDTKVKRLI 101

Query: 281 YLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTG 460
           +LY+   A   P+L LL+IN LQ+   D +  +R  AL +L  +++ +L   ++  +   
Sbjct: 102 HLYLLRFAENDPNLTLLSINSLQKSLSDSNSELRCFALSALSDMKMSSLAPIILHTVKKL 161

Query: 461 LKDPSAYVR 487
           + DPSA VR
Sbjct: 162 VTDPSAMVR 170

to top

>AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related|
           protein complex 3 beta subunit) (Clathrin assembly
           protein large beta chain) (Clathrin assembly protein
           complex 3 beta large chain)
          Length = 745

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 31/119 (26%), Positives = 69/119 (57%)
 Frame = +2

Query: 146 DADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPDLA 325
           ++D  + +    +++ M  G ++S  F ++V   A+ +  ++++ ++Y+  +A  +PDLA
Sbjct: 45  NSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQYAEFNPDLA 104

Query: 326 LLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAAV 502
           LL++N +Q+   D++P  R  A+R + S+RVP +   ++  +   + D +  VR  AA+
Sbjct: 105 LLSVNTVQKTLYDKNPLTRSTAIRVMSSIRVPAINGIVLLAIQQCITDTADRVRQSAAL 163

to top

>AP3D_DROME (P54362) AP-3 complex subunit delta (Delta-adaptin) (Garnet|
           protein) (Delta adaptin subunit of AP-3)
          Length = 1034

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 32/136 (23%), Positives = 59/136 (43%)
 Frame = +2

Query: 95  VSDLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKK 274
           + ++KQ+LRQ       D    + +   ++      G D+S A   ++   ++S    K+
Sbjct: 41  IEEIKQELRQ-------DNISVKCNAVAKLTYIQMLGYDISWAGFNIIEVMSSSRFTCKR 93

Query: 275 MCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLT 454
           + YL          +L +LT N +++D   Q+    G+AL  L     P+L   L   + 
Sbjct: 94  IGYLAASQCFHPDSELLMLTTNMIRKDLNSQNQYDAGVALSGLSCFISPDLSRDLANDIM 153

Query: 455 TGLKDPSAYVRMVAAV 502
           T +     Y+RM A +
Sbjct: 154 TLMSSTKPYLRMKAVL 169

to top

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
 Frame = +2

Query: 149 ADDQRRDVFKRVISCMTAGIDVSAAFGEMV-LCSATSDVVLKKMCYLYVGVHARAHPDLA 325
           +D+Q+ D  K ++  M  G  +      ++     + +  LKK+ Y Y  +  +   D  
Sbjct: 36  SDEQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVPKLAEDGK 95

Query: 326 L-----LTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRM 490
           L     L  N +Q D +  +  IRG  LR L  LR   L+E +V  +   L+   AYVR 
Sbjct: 96  LRHEMILVCNAIQHDLQHPNEYIRGNTLRFLTKLREAELLEQMVPSVLACLEYRHAYVRK 155

Query: 491 VA 496
            A
Sbjct: 156 YA 157

to top

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +2

Query: 266 LKKMCYLYVGVHARAHPDLAL-----LTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLV 430
           LKK+ Y Y  V  + + D  +     L  N  + D +  +  IRG  LR LC L+ P L+
Sbjct: 68  LKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLCKLKEPELL 127

Query: 431 EYLVTPLTTGLKDPSAYVR 487
           + L+  +   L+   AYVR
Sbjct: 128 DPLIPTVRQCLEHRHAYVR 146

to top

>AP2A2_HUMAN (O94973) AP-2 complex subunit alpha-2 (Adapter-related protein|
           complex 2 alpha-2 subunit) (Alpha-adaptin C) (Adaptor
           protein complex AP-2 alpha-2 subunit) (Clathrin assembly
           protein complex 2 alpha-C large chain) (100 kDa coated
           vesicle prote
          Length = 939

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
 Frame = +2

Query: 98  SDLKQQLRQLAGSRAPDADDQRRDVFKR------VISCMTAGIDVSAAFGEMVLCSATSD 259
           +++K+  ++LA  R+    D+  D + +      ++     G D+     E V   +++ 
Sbjct: 28  AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNR 87

Query: 260 VVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVE 433
              K++ YL++ V   ++ +L  L  N ++ D   ++PT  GLAL  + S+    + E
Sbjct: 88  YTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIASVGSREMAE 145

to top

>AP3D1_HUMAN (O14617) AP-3 complex subunit delta-1 (Adapter-related protein|
           complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3
           complex delta subunit) (Delta-adaptin)
          Length = 1153

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 29/136 (21%), Positives = 55/136 (40%)
 Frame = +2

Query: 95  VSDLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKK 274
           + ++KQ+L+Q       D    + +   ++      G D+S A   ++   + S    K+
Sbjct: 40  IDEIKQELKQ-------DNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASKFTFKR 92

Query: 275 MCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLT 454
           + YL          D+ +LT N +++D         G+AL  L     P+L   L   + 
Sbjct: 93  IGYLAASQSFHEGTDVIMLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIM 152

Query: 455 TGLKDPSAYVRMVAAV 502
           T +     Y+R  A +
Sbjct: 153 TLMSHTKPYIRKKAVL 168

to top

>AP3D1_BOVIN (Q865S1) AP-3 complex subunit delta-1 (Adapter-related protein|
           complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3
           complex delta subunit) (Delta-adaptin)
          Length = 1207

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 29/136 (21%), Positives = 55/136 (40%)
 Frame = +2

Query: 95  VSDLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKK 274
           + ++KQ+L+Q       D    + +   ++      G D+S A   ++   + S    K+
Sbjct: 40  IDEIKQELKQ-------DNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASKFTFKR 92

Query: 275 MCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLT 454
           + YL          D+ +LT N +++D         G+AL  L     P+L   L   + 
Sbjct: 93  IGYLAASQCFHEGTDVIMLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIM 152

Query: 455 TGLKDPSAYVRMVAAV 502
           T +     Y+R  A +
Sbjct: 153 TLMSHTKPYIRKKAVL 168

to top

>AP3D1_MOUSE (O54774) AP-3 complex subunit delta-1 (Adapter-related protein|
           complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3
           complex delta subunit) (Delta-adaptin) (mBLVR1)
          Length = 1199

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 29/136 (21%), Positives = 55/136 (40%)
 Frame = +2

Query: 95  VSDLKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKK 274
           + ++KQ+L+Q       D    + +   ++      G D+S A   ++   + S    K+
Sbjct: 40  IDEIKQELKQ-------DNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASKFTFKR 92

Query: 275 MCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLT 454
           + YL          D+ +LT N +++D         G+AL  L     P+L   L   + 
Sbjct: 93  VGYLAASQCFHEGTDVIMLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIM 152

Query: 455 TGLKDPSAYVRMVAAV 502
           T +     Y+R  A +
Sbjct: 153 TLMSHTKPYIRKKAVL 168

to top

>AP2A2_MOUSE (P17427) AP-2 complex subunit alpha-2 (Adapter-related protein|
           complex 2 alpha-2 subunit) (Alpha-adaptin C) (Adaptor
           protein complex AP-2 alpha-2 subunit) (Clathrin assembly
           protein complex 2 alpha-C large chain) (100 kDa coated
           vesicle prote
          Length = 938

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
 Frame = +2

Query: 98  SDLKQQLRQLAGSRAPDADDQRRDVFKR------VISCMTAGIDVSAAFGEMVLCSATSD 259
           +++K+  ++LA  R+    D+  D + +      ++     G D+     E V   +++ 
Sbjct: 28  AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNR 87

Query: 260 VVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVE 433
              K++ YL++ V   ++ +L  L  N ++ D   ++PT  GLAL  + ++    + E
Sbjct: 88  YTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145

to top

>AP2A2_RAT (P18484) AP-2 complex subunit alpha-2 (Adapter-related protein|
           complex 2 alpha-2 subunit) (Alpha-adaptin C) (Adaptor
           protein complex AP-2 alpha-2 subunit) (Clathrin assembly
           protein complex 2 alpha-C large chain) (100 kDa coated
           vesicle protein
          Length = 937

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
 Frame = +2

Query: 98  SDLKQQLRQLAGSRAPDADDQRRDVFKR------VISCMTAGIDVSAAFGEMVLCSATSD 259
           +++K+  ++LA  R+    D+  D + +      ++     G D+     E V   +++ 
Sbjct: 27  AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNR 86

Query: 260 VVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVE 433
              K++ YL++ V   ++ +L  L  N ++ D   ++PT  GLAL  + ++    + E
Sbjct: 87  YTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 144

to top

>AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Clathrin|
           assembly protein large beta chain) (Clathrin assembly
           protein complex 2 beta large chain)
          Length = 700

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
 Frame = +2

Query: 158 QRRDVFKRVISCMTAGI--DVSAAFGEMV-LCSATSDVVLKKMCYLYVGVHARAHPDLAL 328
           +R++  +++I+ +  G   ++S  F E++       D+ +K++C+ Y+ V     P  A 
Sbjct: 33  RRKNALRKIIANLVLGNYGEMSVLFSELLKFWQIEDDLEVKRICHEYIRVIGALKPQQAR 92

Query: 329 LTINFLQRDCRDQDPTIRGLALRSLCSLRVPNL 427
             + F+  D + +D  ++ +ALR+L  + V  L
Sbjct: 93  EALPFIMDDFKSRDEKLQIMALRTLVLVPVKEL 125

to top

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +2

Query: 257 DVVLKKMCYLYVGVHARAHPDLALLTINFL-----QRDCRDQDPTIRGLALRSLCSLRVP 421
           D  +KK+  ++  +  +  PD  LL    L     ++D +  +  IRG  LR LC L+  
Sbjct: 71  DHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEA 130

Query: 422 NLVEYLVTPLTTGLKDPSAYVRMVAAV 502
            L+E L+  +   L+   +YVR  A +
Sbjct: 131 ELLEPLMPAIRACLEHRHSYVRRNAVL 157

to top

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +2

Query: 257 DVVLKKMCYLYVGVHARAHPDLALLTINFL-----QRDCRDQDPTIRGLALRSLCSLRVP 421
           D  +KK+  ++  +  +  PD  LL    L     ++D +  +  IRG  LR LC L+  
Sbjct: 71  DHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEA 130

Query: 422 NLVEYLVTPLTTGLKDPSAYVRMVAAV 502
            L+E L+  +   L+   +YVR  A +
Sbjct: 131 ELLEPLMPAIRACLEHRHSYVRRNAVL 157

to top

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +2

Query: 257 DVVLKKMCYLYVGVHARAHPDLALLTINFL-----QRDCRDQDPTIRGLALRSLCSLRVP 421
           D  +KK+  ++  +  +  PD  LL    L     ++D +  +  IRG  LR LC L+  
Sbjct: 71  DHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEA 130

Query: 422 NLVEYLVTPLTTGLKDPSAYVRMVAAV 502
            L+E L+  +   L+   +YVR  A +
Sbjct: 131 ELLEPLMPAIRACLEHRHSYVRRNAVL 157

to top

>AP2A_DROME (P91926) AP-2 complex subunit alpha (Alpha-adaptin)|
          Length = 940

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
 Frame = +2

Query: 98  SDLKQQLRQLAGSRAPDADDQRRDVFKR------VISCMTAGIDVSAAFGEMVLCSATSD 259
           +++K+  ++LA  R+    D+  D +++      ++     G D+     E V   +++ 
Sbjct: 27  AEVKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNK 86

Query: 260 VVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVE 433
              K++ YL++ V    + DL  L I  ++ D + ++P    LAL+ + ++   ++ E
Sbjct: 87  YSEKQIGYLFISVLVNTNSDLIRLIIQSIKNDLQSRNPVHVNLALQCIANIGSRDMAE 144

to top

>AP2A1_MOUSE (P17426) AP-2 complex subunit alpha-1 (Adapter-related protein|
           complex 2 alpha-1 subunit) (Alpha-adaptin A) (Adaptor
           protein complex AP-2 alpha-1 subunit) (Clathrin assembly
           protein complex 2 alpha-A large chain) (100 kDa coated
           vesicle prote
          Length = 977

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 23/111 (20%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
 Frame = +2

Query: 98  SDLKQQLRQLAGSRAPDADDQRRDVFKR------VISCMTAGIDVSAAFGEMVLCSATSD 259
           +++K+  ++LA  R+    D+  D + +      ++     G D+     E V   +++ 
Sbjct: 28  AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNK 87

Query: 260 VVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSL 412
              K++ YL++ V   ++ +L  L  N ++ D   ++PT   LAL  + ++
Sbjct: 88  YTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANV 138

to top

>AP2A1_HUMAN (O95782) AP-2 complex subunit alpha-1 (Adapter-related protein|
           complex 2 alpha-1 subunit) (Alpha-adaptin A) (Adaptor
           protein complex AP-2 alpha-1 subunit) (Clathrin assembly
           protein complex 2 alpha-A large chain) (100 kDa coated
           vesicle prote
          Length = 977

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 23/111 (20%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
 Frame = +2

Query: 98  SDLKQQLRQLAGSRAPDADDQRRDVFKR------VISCMTAGIDVSAAFGEMVLCSATSD 259
           +++K+  ++LA  R+    D+  D + +      ++     G D+     E V   +++ 
Sbjct: 28  AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNK 87

Query: 260 VVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSL 412
              K++ YL++ V   ++ +L  L  N ++ D   ++PT   LAL  + ++
Sbjct: 88  YTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANV 138

to top

>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 326 LLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVAAV 502
           +L  +  ++D +  +  +RG  LR LC L+ P L+E L+  +   L    +YVR  A +
Sbjct: 97  ILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRNAVL 155

to top

>AP3D_YEAST (Q08951) AP-3 complex subunit delta (Adapter-related protein|
           complex 3 delta subunit) (Delta-adaptin 3) (AP-3 complex
           delta subunit) (Delta-adaptin)
          Length = 932

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
 Frame = +2

Query: 140 APDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARAHPD 319
           +PD + +   V K     M  G D++     ++   +++ +  K++ YL          D
Sbjct: 61  SPDLNSKTNAVLKLTYLEMY-GFDMAWCNFHILEVMSSNKLQQKRVGYLAASQSFYKDSD 119

Query: 320 LALLTINFLQRDCR---DQDPTIRGLALRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRM 490
           + +L  N L++D +   + D    G+AL  L ++  P+L   +   L T L     Y+R 
Sbjct: 120 ILMLATNLLKKDLKYDGNNDVVKVGIALSGLSTIITPSLARDIADDLFTMLNSTRPYIRK 179

Query: 491 VA 496
            A
Sbjct: 180 KA 181

to top

>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)|
           (Gamma-COP)
          Length = 905

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 21/82 (25%), Positives = 39/82 (47%)
 Frame = +2

Query: 257 DVVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLALRSLCSLRVPNLVEY 436
           D  L++  Y+ +   +    D+ ++T + ++     ++   R  A+RSL  +   N V  
Sbjct: 77  DPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRSLIRVIDANTVPA 136

Query: 437 LVTPLTTGLKDPSAYVRMVAAV 502
           +   LTTG+ DP + V   A V
Sbjct: 137 IERILTTGIVDPISAVASAALV 158

to top

>REEP1_MOUSE (Q8BGH4) Receptor expression-enhancing protein 1|
          Length = 201

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 226 RGDGALLRHLRRCAQEDVLPLRRCPCARPSGPRPP 330
           +G GAL   LR  + +D+  +R      PSGP PP
Sbjct: 139 KGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP 173

to top

>REEP1_HUMAN (Q9H902) Receptor expression-enhancing protein 1|
          Length = 201

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 226 RGDGALLRHLRRCAQEDVLPLRRCPCARPSGPRPP 330
           +G GAL   LR  + +D+  +R      PSGP PP
Sbjct: 139 KGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP 173

to top

>IMB3_SCHPO (O74476) Importin beta-3 subunit|
          Length = 1095

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 335 INFLQRDCRDQDPTIRGLALRSLCSL-RVPNLVEYLVTPL-TTGLKDPSAYVRMVAA 499
           IN +       D + R    R++ SL R+ +  +  VTPL TTGL DPS  VR+ AA
Sbjct: 141 INVIFNAVNSPDESFRESVFRTITSLPRLLSGQDSAVTPLFTTGLADPSIRVRISAA 197

to top

>PUR4_VIBPA (Q87RW0) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1302

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 265 HNVGGGGAEHHLPERRRDVDTCG--HARDHPLEDIPALIISVWC 140
           H+VG GG  + LPE   D +  G    RD P +++    + +WC
Sbjct: 501 HDVGAGGISNALPELCDDGERGGKFQLRDVPNDELSMSPLEIWC 544

to top

>AP1G2_HUMAN (O75843) AP-1 complex subunit gamma-2 (Adapter-related protein|
           complex 1 gamma-2 subunit) (Gamma2-adaptin) (Adaptor
           protein complex AP-1 gamma-2 subunit) (G2ad)
          Length = 785

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 218 AAFGEMVLCS--ATSDVVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLA 391
           A FG+M      A+S    K++ YL   +      D  LL  N ++ D       ++GLA
Sbjct: 64  AHFGQMECLKLIASSRFTDKRVGYLGAMLLLDERHDAHLLITNSIKNDLSQGIQPVQGLA 123

Query: 392 LRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVA 496
           L +L ++    +   L   +   L  PS YVR  A
Sbjct: 124 LCTLSTMGSAEMCRDLAPEVEKLLLQPSPYVRKKA 158

to top

>AP1G2_MOUSE (O88512) AP-1 complex subunit gamma-2 (Adapter-related protein|
           complex 1 gamma-2 subunit) (Gamma2-adaptin) (Adaptor
           protein complex AP-1 gamma-2 subunit) (G2ad)
          Length = 791

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +2

Query: 218 AAFGEMVLCS--ATSDVVLKKMCYLYVGVHARAHPDLALLTINFLQRDCRDQDPTIRGLA 391
           A FG+M      A+     K++ YL   +      D  LL  N ++ D    +  ++GLA
Sbjct: 64  AHFGQMECLKLIASPRFTDKRVGYLGAMLLLDERHDSHLLITNSIKNDLSQGNQPVQGLA 123

Query: 392 LRSLCSLRVPNLVEYLVTPLTTGLKDPSAYVRMVA 496
           L +L ++    +   L   +   L  PS YVR  A
Sbjct: 124 LCTLSTMGSAEMCRDLAPEVEKLLLQPSPYVRKKA 158

to top

>PUR4_VIBVY (Q7MN70) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1297

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 265 HNVGGGGAEHHLPERRRDVDTCG--HARDHPLEDIPALIISVWC 140
           H+VG GG  + LPE   D +  G    RD P ++     + +WC
Sbjct: 501 HDVGAGGISNALPELVNDGERGGKFQLRDVPNDEPGMSPLEIWC 544

to top

>PUR4_VIBVU (Q8DF81) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1297

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 265 HNVGGGGAEHHLPERRRDVDTCG--HARDHPLEDIPALIISVWC 140
           H+VG GG  + LPE   D +  G    RD P ++     + +WC
Sbjct: 501 HDVGAGGISNALPELVNDGERGGKFQLRDVPNDEPGMSPLEIWC 544

to top

>BLM10_YEAST (P43583) Proteasome activator BLM10 (Bleomycin resistance protein|
            BLM10)
          Length = 2143

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 25/77 (32%), Positives = 43/77 (55%)
 Frame = +2

Query: 104  LKQQLRQLAGSRAPDADDQRRDVFKRVISCMTAGIDVSAAFGEMVLCSATSDVVLKKMCY 283
            +K+Q+++ AGS    ++ Q+RDV  +++  +TA  DV     E +L    SD ++  M Y
Sbjct: 847  IKEQIKRGAGSVRSTSEIQQRDV--KLVLYLTALNDVLRQCHESLL--EYSDELITFMKY 902

Query: 284  LYVGVHARAHPDLALLT 334
            LY  V    +P L ++T
Sbjct: 903  LYDNV---TNPPLDVIT 916


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,785,248
Number of Sequences: 219361
Number of extensions: 939198
Number of successful extensions: 3342
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3342
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result