>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
            Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -3

Query: 162  QGDGCG-----REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMD 16
            +G GCG      + GEEA   + + GS   +S + A EE E    +SSP  P +
Sbjct: 1236 EGGGCGVGGGGGDGGEEAQTQIGAKGS---SSQDSAMEEEEQGGGSSSPALPAE 1286

>SYI_XYLFA (Q9PAS7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 943

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 250  FLIQFLPTLRSP--NCWHQRS*LEAH-HHPPRCGCCL 351
            F +   PT ++    CWH R+ + AH  HP  CG C+
Sbjct: 894  FFVSAQPTTKAKCARCWHYRADIGAHPTHPELCGRCV 930

>HTPG_BRAJA (Q89CK8) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 625

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 193 RVLKERRRAGPGR-WMWTRSGGRGGSQLEQQRQQCAHISRG 74
           +++   RRAG    W WT SGG G        +  A ++RG
Sbjct: 139 KIIVVSRRAGESDVWSWTSSGGSGFEIARASEEDAARVTRG 179

>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 929

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 289 CWHQRS*LEAH-HHPPRCGCCLQS 357
           CWH R  ++AH  HP  CG C+ +
Sbjct: 895 CWHYRDDVDAHPEHPGLCGRCVSN 918

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 144  REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4
            RE   E A   SSS    R S       G MR +   P T + A PP
Sbjct: 1190 REREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPP 1236

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -3

Query: 144  REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4
            RE   E A   SSS    R S       G MR +   P T + A PP
Sbjct: 1198 REREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPP 1244

>RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) (RecQ|
           protein-like 5) (RecQ5)
          Length = 991

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = -3

Query: 171 EQDQG-DGCG------REAGEEAAVSLSSSGSNARTSHEDAK 67
           E D+G  GCG      REA E+ A+ LS  G NA+  H   K
Sbjct: 253 EADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLK 294

>NFE2_HUMAN (Q16621) Transcription factor NF-E2 45 kDa subunit (Nuclear factor,|
           erythroid-derived 2 45 kDa subunit) (p45 NF-E2) (Leucine
           zipper protein NF-E2)
          Length = 373

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -2

Query: 184 KERRRAGPGRWMWTRSGGRGGSQLEQQRQQCAHISRGCKRGRRDESGCLLSPHTY 20
           +E  R    R    R+ G     LE  RQQ   + R   +  RDESG   SP  Y
Sbjct: 296 RELERLTNERERLLRARGEADRTLEVMRQQLTELYRDIFQHLRDESGNSYSPEEY 350

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 144  REAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPLTPMDAAPP 4
            REA E AA   SSS    R S       G MR +   P T + A PP
Sbjct: 1192 REA-ERAAQKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPP 1237

>SYI_XYLFT (Q87BL5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 943

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 289 CWHQRS*LEAH-HHPPRCGCCL 351
           CWH R+ + AH  HP  CG C+
Sbjct: 909 CWHYRADIGAHPTHPELCGRCI 930

>XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells homolog|
           (Xeroderma pigmentosum group C-complementing protein
           homolog) (p125)
          Length = 930

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
 Frame = -2

Query: 184 KERRRAGPGRWMWTRSGGRGGSQLEQQRQ-------QCAHISRGCKRGRRDESG 44
           K++R + P R   T++G +  S+ ++  Q       + +  S GCKRG++  SG
Sbjct: 459 KQKRASAPQR---TKAGSKSASKTQRGSQCEPSSFPEASSSSSGCKRGKKVSSG 509

>SRBP2_CRIGR (Q60429) Sterol regulatory element-binding protein 2 (SREBP-2)|
           (Sterol regulatory element-binding transcription factor
           2)
          Length = 1139

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 153 GCGREAGEEAAVSLSSSGSNARTSHEDAKEEGEMRAAASSPL---TPMDAAP 7
           G G      ++ S SSSGSN+R +   A + G  R+ +  PL   +P  A+P
Sbjct: 56  GGGSSGSSSSSNSSSSSGSNSRGNGGAATDPGVQRSFSQVPLPTFSPSTASP 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,331,906
Number of Sequences: 219361
Number of extensions: 978506
Number of successful extensions: 3606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3594
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)