ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl20g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476397.1| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4dbj|AK070584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
5dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6ref|XM_391452.1| Gibberella zeae PH-1 chromosome linkage group 1... 44 0.37
7gb|AC153769.3| Loxodonta africana clone VMRC15-397D22, complete ... 44 0.37
8emb|AL162719.18| Human DNA sequence from clone RP11-461D23 on ch... 42 1.5
9gb|AY220100.1| Sphingomonas elodea strain ATCC31461 small protei... 42 1.5
10dbj|AK164071.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 42 1.5
11gb|AC156833.2| Mus musculus BAC clone RP24-161C10 from chromosom... 42 1.5
12gb|AC011299.3| Homo sapiens BAC clone RP11-232C20 from 7, comple... 40 5.8
13gb|AC124580.5| Mus musculus BAC clone RP23-114G7 from chromosome... 40 5.8
14gb|AC124699.4| Mus musculus BAC clone RP24-187B13 from chromosom... 40 5.8
15gb|AC145864.2| Pan troglodytes BAC clone RP43-6L18 from 7, compl... 40 5.8
16gb|AC146264.3| Pan troglodytes BAC clone RP43-28O13 from 7, comp... 40 5.8
17gb|BC057399.1| Mus musculus calcium channel, voltage-dependent, ... 40 5.8
18emb|CR653950.2|CNS0F3K4 Tetraodon nigroviridis full-length cDNA 40 5.8
19gb|AC157380.6| Mus musculus chromosome 3, clone RP23-404C21, com... 40 5.8
20gb|AC144613.1| Pan troglodytes BAC clone RP43-1F6 from 7, comple... 40 5.8
21ref|NM_003930.3| Homo sapiens src family associated phosphoprote... 40 5.8
22emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chro... 40 5.8
23ref|NM_009783.1| Mus musculus calcium channel, voltage-dependent... 40 5.8
24emb|AL133541.21| Human DNA sequence from clone RP1-126E20 on chr... 40 5.8
25emb|AL118510.6|HSJ858M22 Human DNA sequence from clone RP5-858M2... 40 5.8
26gb|AC032044.28| Homo sapiens chromosome 17, clone RP11-818O24, c... 40 5.8
27emb|BX548005.11| Zebrafish DNA sequence from clone DKEY-105A17 i... 40 5.8
28gb|AC068763.11| Homo sapiens 3 BAC RP11-133K20 (Roswell Park Can... 40 5.8
29dbj|AK124044.1| Homo sapiens cDNA FLJ42050 fis, clone SPLEN2041977 40 5.8
30dbj|AK149150.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.8
31gb|DQ317412.1| Mus musculus T-type calcium channel alpha 1G subu... 40 5.8
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
33gb|AF197465.1|AF197465 Pseudomonas fluorescens nitrate/nitrite r... 40 5.8
34dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35ref|XM_306480.2| Anopheles gambiae str. PEST ENSANGP00000001727 ... 40 5.8
36emb|AL805955.26| Mouse DNA sequence from clone RP23-192A6 on chr... 40 5.8
37gb|AC151572.2| Mus musculus BAC clone RP23-388I22 from 1, comple... 40 5.8
38emb|AL772358.6| Mouse DNA sequence from clone RP23-397K2 on chro... 40 5.8
39emb|AJ012569.1|MMU012569 Mus musculus mRNA for voltage-gated cal... 40 5.8 
>ref|XM_476397.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3884

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 388 gggtgcgtcaccgggatcctgcaggccttcgaccgccg 425
           |||||||||||||||||||||||||| |||||||||||
Sbjct: 450 gggtgcgtcaccgggatcctgcaggcgttcgaccgccg 487
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 388    gggtgcgtcaccgggatcctgcaggccttcgaccgccg 425
              |||||||||||||||||||||||||| |||||||||||
Sbjct: 515313 gggtgcgtcaccgggatcctgcaggcgttcgaccgccg 515350
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0585H11
          Length = 149371

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 388    gggtgcgtcaccgggatcctgcaggccttcgaccgccg 425
              |||||||||||||||||||||||||| |||||||||||
Sbjct: 117477 gggtgcgtcaccgggatcctgcaggcgttcgaccgccg 117514
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>dbj|AK070584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062J01, full
           insert sequence
          Length = 3885

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 388 gggtgcgtcaccgggatcctgcaggccttcgaccgccg 425
           |||||||||||||||||||||||||| |||||||||||
Sbjct: 451 gggtgcgtcaccgggatcctgcaggcgttcgaccgccg 488
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>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1567_G09
          Length = 121388

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 388   gggtgcgtcaccgggatcctgcaggccttcgaccgccg 425
             |||||||||||||||||||||||||| |||||||||||
Sbjct: 69225 gggtgcgtcaccgggatcctgcaggcgttcgaccgccg 69262
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>ref|XM_391452.1| Gibberella zeae PH-1 chromosome linkage group 14 hypothetical
           protein (FG11276.1) partial mRNA
          Length = 1905

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 79  accagacttcccctccatcatctacc 104
           |||||||||||| |||||||||||||
Sbjct: 965 accagacttcccgtccatcatctacc 990
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>gb|AC153769.3| Loxodonta africana clone VMRC15-397D22, complete sequence
          Length = 129001

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 92     tccatcatctacctccagtccc 113
              ||||||||||||||||||||||
Sbjct: 122864 tccatcatctacctccagtccc 122843
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>emb|AL162719.18| Human DNA sequence from clone RP11-461D23 on chromosome 6 Contains
            part of a putative novel transcript, complete sequence
          Length = 91219

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  ttgggtggaagggggaggagg 322
            |||||||||||||||||||||
Sbjct: 5001 ttgggtggaagggggaggagg 4981
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>gb|AY220100.1| Sphingomonas elodea strain ATCC31461 small protein B (smpB),
            hypothetical protein, gellan polysaccharide biosynthesis
            regulator protein (gelA), and putative valyl-tRNA
            synthetase (valS) genes, complete cds
          Length = 8117

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 371  acctgcaccgccagatcgggtgcgt 395
            |||||||||||||||||| ||||||
Sbjct: 3319 acctgcaccgccagatcgagtgcgt 3295
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>dbj|AK164071.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430047P20 product:hypothetical
            protein, full insert sequence
          Length = 5775

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  tcttcttctttagctggtagc 259
            |||||||||||||||||||||
Sbjct: 2429 tcttcttctttagctggtagc 2449
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>gb|AC156833.2| Mus musculus BAC clone RP24-161C10 from chromosome 9, complete sequence
          Length = 166954

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 85    cttcccctccatcatctacctccagtccc 113
             ||||||||||||| ||| |||||||||||
Sbjct: 93257 cttcccctccatcttctccctccagtccc 93229
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>gb|AC011299.3| Homo sapiens BAC clone RP11-232C20 from 7, complete sequence
          Length = 147712

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    ccctctgggcggggctgggc 202
              ||||||||||||||||||||
Sbjct: 105129 ccctctgggcggggctgggc 105110
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>gb|AC124580.5| Mus musculus BAC clone RP23-114G7 from chromosome 12, complete sequence
          Length = 176245

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    tgggtggaagggggaggagg 322
              ||||||||||||||||||||
Sbjct: 116036 tgggtggaagggggaggagg 116017
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>gb|AC124699.4| Mus musculus BAC clone RP24-187B13 from chromosome 1, complete sequence
          Length = 177793

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   cctctgggcggggctgggctgcct 207
             ||||||||| ||||||||||||||
Sbjct: 83534 cctctgggctgggctgggctgcct 83511
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>gb|AC145864.2| Pan troglodytes BAC clone RP43-6L18 from 7, complete sequence
          Length = 206128

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 144    ctcaccgctcagcctcctcacaag 167
              ||||||||| ||||||||||||||
Sbjct: 187009 ctcaccgctgagcctcctcacaag 186986
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>gb|AC146264.3| Pan troglodytes BAC clone RP43-28O13 from 7, complete sequence
          Length = 163276

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   ctcaccgctcagcctcctcacaag 167
             ||||||||| ||||||||||||||
Sbjct: 69339 ctcaccgctgagcctcctcacaag 69316
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>gb|BC057399.1| Mus musculus calcium channel, voltage-dependent, T type, alpha 1G
           subunit, mRNA (cDNA clone MGC:62312 IMAGE:6410519),
           complete cds
          Length = 7527

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 ggatcctgcaggccttcgac 420
           ||||||||||||||||||||
Sbjct: 764 ggatcctgcaggccttcgac 783
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>emb|CR653950.2|CNS0F3K4 Tetraodon nigroviridis full-length cDNA
          Length = 1117

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   ctcacagctcttccagtccc 20
           ||||||||||||||||||||
Sbjct: 381 ctcacagctcttccagtccc 362
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>gb|AC157380.6| Mus musculus chromosome 3, clone RP23-404C21, complete sequence
          Length = 196528

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tcatagaggagaggagcagc 46
             ||||||||||||||||||||
Sbjct: 82400 tcatagaggagaggagcagc 82381
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>gb|AC144613.1| Pan troglodytes BAC clone RP43-1F6 from 7, complete sequence
          Length = 177443

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   ccctctgggcggggctgggc 202
             ||||||||||||||||||||
Sbjct: 21584 ccctctgggcggggctgggc 21603
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>ref|NM_003930.3| Homo sapiens src family associated phosphoprotein 2 (SCAP2), mRNA
          Length = 3984

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 ccctctgggcggggctgggc 202
           ||||||||||||||||||||
Sbjct: 79  ccctctgggcggggctgggc 98
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>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part
             of the EPHB2 gene for EphB2 and a novel gene, complete
             sequence
          Length = 126589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 181   gtccctctgggcggggctgggctg 204
             |||||||||||| |||||||||||
Sbjct: 99318 gtccctctgggctgggctgggctg 99295
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>ref|NM_009783.1| Mus musculus calcium channel, voltage-dependent, T type, alpha 1G
           subunit (Cacna1g), mRNA
          Length = 7625

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 ggatcctgcaggccttcgac 420
           ||||||||||||||||||||
Sbjct: 452 ggatcctgcaggccttcgac 471
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>emb|AL133541.21| Human DNA sequence from clone RP1-126E20 on chromosome 6 Contains the
             3' end of the BMP6 gene for bone morphogenetic protein 6,
             the gene for a novel protein similar to protein disulfide
             isomerases and a CpG island, complete sequence
          Length = 117952

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    agaggagcagcaaaacagga 55
             ||||||||||||||||||||
Sbjct: 28591 agaggagcagcaaaacagga 28610
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>emb|AL118510.6|HSJ858M22 Human DNA sequence from clone RP5-858M22 on chromosome 20 Contains
            part of the C20orf133 gene for chromosome 20 open reading
            frame 133 and the RPS10P2 gene for ribosomal protein S10
            pseudogene 2, complete sequence
          Length = 124114

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   agaggagaggagcagcaaaa 50
            ||||||||||||||||||||
Sbjct: 9238 agaggagaggagcagcaaaa 9257
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>gb|AC032044.28| Homo sapiens chromosome 17, clone RP11-818O24, complete sequence
          Length = 199656

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 181    gtccctctgggcggggctgggctg 204
              |||||||||||| |||||||||||
Sbjct: 169909 gtccctctgggctgggctgggctg 169886
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>emb|BX548005.11| Zebrafish DNA sequence from clone DKEY-105A17 in linkage group 6,
             complete sequence
          Length = 218236

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   gcttggtttggttcgctttg 280
             ||||||||||||||||||||
Sbjct: 49776 gcttggtttggttcgctttg 49757
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>gb|AC068763.11| Homo sapiens 3 BAC RP11-133K20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   tcttgggtggaagggggagg 319
             ||||||||||||||||||||
Sbjct: 82927 tcttgggtggaagggggagg 82946
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>dbj|AK124044.1| Homo sapiens cDNA FLJ42050 fis, clone SPLEN2041977
          Length = 2736

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 183 ccctctgggcggggctgggc 202
           ||||||||||||||||||||
Sbjct: 889 ccctctgggcggggctgggc 870
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>dbj|AK149150.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120489C20
            product:phosphodiesterase 4B, cAMP specific, full insert
            sequence
          Length = 2349

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 187  ctgggcggggctgggctgcctcca 210
            |||||| |||||||||||||||||
Sbjct: 1715 ctgggctgggctgggctgcctcca 1738
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>gb|DQ317412.1| Mus musculus T-type calcium channel alpha 1G subunit (Cacna1g)
           mRNA, complete cds
          Length = 7281

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 ggatcctgcaggccttcgac 420
           ||||||||||||||||||||
Sbjct: 464 ggatcctgcaggccttcgac 483
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 304     gggtggaagggggaggaggc 323
               ||||||||||||||||||||
Sbjct: 6383818 gggtggaagggggaggaggc 6383837
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>gb|AF197465.1|AF197465 Pseudomonas fluorescens nitrate/nitrite response regulator (narL),
            nitrate/nitrite sensor protein (narX), putative
            nitrate/nitrite transporter (narD), putative
            nitrate/nitrite transporter (narK), respiratory nitrate
            reductase alpha subunit (narG), respiratory nitrate
            reductase beta subunit (narH), putative chaperone protein
            (narJ), and respiratory nitrate reductase gamma subunit
            (narI) genes, complete cds; and NifM (nifM) gene, partial
            cds
          Length = 12620

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 328  ccggccaagtacctgctggccttg 351
            ||||||||| ||||||||||||||
Sbjct: 1590 ccggccaagcacctgctggccttg 1567
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>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1006_D05
          Length = 128178

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   gggtggaagggggaggaggc 323
             ||||||||||||||||||||
Sbjct: 25811 gggtggaagggggaggaggc 25830
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>ref|XM_306480.2| Anopheles gambiae str. PEST ENSANGP00000001727
           (ENSANGG00000001446), partial mRNA
          Length = 900

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 309 gaagggggaggaggcgatgccggc 332
           |||| |||||||||||||||||||
Sbjct: 681 gaagagggaggaggcgatgccggc 658
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>emb|AL805955.26| Mouse DNA sequence from clone RP23-192A6 on chromosome 2, complete
             sequence
          Length = 182439

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   tcctccctgcattcttgggt 307
             ||||||||||||||||||||
Sbjct: 32691 tcctccctgcattcttgggt 32672
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>gb|AC151572.2| Mus musculus BAC clone RP23-388I22 from 1, complete sequence
          Length = 187409

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   tgggtggaagggggaggagg 322
             ||||||||||||||||||||
Sbjct: 46715 tgggtggaagggggaggagg 46696
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>emb|AL772358.6| Mouse DNA sequence from clone RP23-397K2 on chromosome 4, complete
              sequence
          Length = 173518

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 187    ctgggcggggctgggctgcctcca 210
              |||||| |||||||||||||||||
Sbjct: 132126 ctgggctgggctgggctgcctcca 132149
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>emb|AJ012569.1|MMU012569 Mus musculus mRNA for voltage-gated calcium channel, alpha-1-G
           subunit
          Length = 7625

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 ggatcctgcaggccttcgac 420
           ||||||||||||||||||||
Sbjct: 452 ggatcctgcaggccttcgac 471


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,546,951
Number of Sequences: 3902068
Number of extensions: 5546951
Number of successful extensions: 96497
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96332
Number of HSP's gapped (non-prelim): 165
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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