ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 4e-29
3gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 137 4e-29
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
5gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 137 4e-29
6ref|NM_115595.1| Arabidopsis thaliana unknown protein AT3G57350 ... 56 1e-04
7ref|NM_129725.2| Arabidopsis thaliana unknown protein AT2G41620 ... 50 0.007
8gb|AY113905.1| Arabidopsis thaliana unknown protein (At2g41620) ... 50 0.007
9gb|AY034907.1| Arabidopsis thaliana unknown protein (At2g41620) ... 50 0.007
10gb|CP000249.1| Frankia sp. CcI3, complete genome 46 0.10
11gb|AY021663.1| Oryza sativa microsatellite MRG3988 containing (T... 44 0.40
12gb|AC120147.8| Mus musculus chromosome 19, clone RP24-223N20, co... 44 0.40
13gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 44 0.40
14gb|AC162456.3| Mus musculus chromosome 19, clone RP23-406F15, co... 44 0.40
15gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 44 0.40
16gb|AC157914.4| Mus musculus chromosome 19, clone RP24-284E14, co... 44 0.40
17gb|AC090064.3| Homo sapiens chromosome 5 clone CTB-43C3, complet... 42 1.6
18gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complet... 42 1.6
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.6
21dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, com... 40 6.3
23gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.3
24gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 6.3
25gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, c... 40 6.3
26emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.3
27emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 6.3
28gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.3
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
30dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
31gb|AC133158.2| Mus musculus BAC clone RP24-491F15 from 8, comple... 40 6.3
32gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complet... 40 6.3 
>dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K18, full
           insert sequence
          Length = 3073

 Score =  464 bits (234), Expect = e-127
 Identities = 330/362 (91%)
 Strand = Plus / Plus

                                                                       
Query: 105 ggagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgc 164
           |||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 120 ggagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgc 179

                                                                       
Query: 165 cctcacccctcacttccccgccctccagaggaacctggaccagctcgaggtgctctccac 224
           || |||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 180 ccccaccccgcacttccctcccctccagaggaacctggaccagctggaggtgctctccac 239

                                                                       
Query: 225 caagctcaaggccaagacgatccgcgccgaggcgccgtcacagtcgctctccgccaccag 284
           ||||||||||||||||||| | ||||||||||||||    ||||||||||||||||||||
Sbjct: 240 caagctcaaggccaagacggtgcgcgccgaggcgcccgtgcagtcgctctccgccaccag 299

                                                                       
Query: 285 gttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcattcga 344
           |||| |||||||||||||||||||||| ||||||||| |||| |||||||| || |||||
Sbjct: 300 gttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatccttcga 359

                                                                       
Query: 345 actcaagaccacctttgaggatgtttttccatcggaagcaacttctgtcgaggaatacct 404
           ||| |||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct: 360 acttaagaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacct 419

                                                                       
Query: 405 gcaacagcttcatgaaatggcaattgtctcatccatccaaggagcacaaaaggacaactt 464
           ||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct: 420 gcagcagcttcatgaaatggcaatcgtctcatccattcaagaagcacaaaaggacaactt 479

             
Query: 465 aa 466
           ||
Sbjct: 480 aa 481



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 62 cggcggcgatggccggcgtcgg 83
          ||||||||||||||||||||||
Sbjct: 71 cggcggcgatggccggcgtcgg 92
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 4e-29
 Identities = 90/97 (92%)
 Strand = Plus / Minus

                                                                            
Query: 190      cagaggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgc 249
                |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct: 13083469 cagaggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgc 13083410

                                                     
Query: 250      gccgaggcgccgtcacagtcgctctccgccaccaggt 286
                |||||||||||    ||||||||||||||||||||||
Sbjct: 13083409 gccgaggcgcccgtgcagtcgctctccgccaccaggt 13083373



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                            
Query: 105      ggagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgc 164
                |||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 13083671 ggagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgc 13083612

                                            
Query: 165      cctcacccctcacttccccgccctccag 192
                || |||||| ||||||||  ||||||||
Sbjct: 13083611 ccccaccccgcacttccctcccctccag 13083584



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                          
Query: 409      cagcttcatgaaatggcaattgtctcatccatccaaggagcacaaaaggacaacttaa 466
                |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 13082028 cagcttcatgaaatggcaatcgtctcatccattcaagaagcacaaaaggacaacttaa 13081971



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                            
Query: 282      caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 341
                ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || ||
Sbjct: 13083236 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 13083177

                      
Query: 342      cgaact 347
                ||||||
Sbjct: 13083176 cgaact 13083171



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                          
Query: 350      agaccacctttgaggatgtttttccatcggaagcaacttctgtcgaggaatacctgca 407
                ||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct: 13082175 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctgca 13082118



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 62       cggcggcgatggccggcgtcgg 83
                ||||||||||||||||||||||
Sbjct: 13083720 cggcggcgatggccggcgtcgg 13083699
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>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
              from chromosome 3, complete sequence
          Length = 151173

 Score =  137 bits (69), Expect = 4e-29
 Identities = 90/97 (92%)
 Strand = Plus / Plus

                                                                          
Query: 190    cagaggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgc 249
              |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct: 143169 cagaggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgc 143228

                                                   
Query: 250    gccgaggcgccgtcacagtcgctctccgccaccaggt 286
              |||||||||||    ||||||||||||||||||||||
Sbjct: 143229 gccgaggcgcccgtgcagtcgctctccgccaccaggt 143265



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                          
Query: 105    ggagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgc 164
              |||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 142967 ggagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgc 143026

                                          
Query: 165    cctcacccctcacttccccgccctccag 192
              || |||||| ||||||||  ||||||||
Sbjct: 143027 ccccaccccgcacttccctcccctccag 143054



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                        
Query: 409    cagcttcatgaaatggcaattgtctcatccatccaaggagcacaaaaggacaacttaa 466
              |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 144610 cagcttcatgaaatggcaatcgtctcatccattcaagaagcacaaaaggacaacttaa 144667



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                        
Query: 350    agaccacctttgaggatgtttttccatcggaagcaacttctgtcgaggaatacctgca 407
              ||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct: 144463 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctgca 144520



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                          
Query: 282    caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 341
              ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || ||
Sbjct: 143402 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 143461

                    
Query: 342    cgaact 347
              ||||||
Sbjct: 143462 cgaact 143467



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 62     cggcggcgatggccggcgtcgg 83
              ||||||||||||||||||||||
Sbjct: 142918 cggcggcgatggccggcgtcgg 142939
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 4e-29
 Identities = 90/97 (92%)
 Strand = Plus / Minus

                                                                            
Query: 190      cagaggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgc 249
                |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct: 13080244 cagaggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgc 13080185

                                                     
Query: 250      gccgaggcgccgtcacagtcgctctccgccaccaggt 286
                |||||||||||    ||||||||||||||||||||||
Sbjct: 13080184 gccgaggcgcccgtgcagtcgctctccgccaccaggt 13080148



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                            
Query: 105      ggagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgc 164
                |||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 13080446 ggagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgc 13080387

                                            
Query: 165      cctcacccctcacttccccgccctccag 192
                || |||||| ||||||||  ||||||||
Sbjct: 13080386 ccccaccccgcacttccctcccctccag 13080359



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                          
Query: 409      cagcttcatgaaatggcaattgtctcatccatccaaggagcacaaaaggacaacttaa 466
                |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 13078803 cagcttcatgaaatggcaatcgtctcatccattcaagaagcacaaaaggacaacttaa 13078746



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                            
Query: 282      caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 341
                ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || ||
Sbjct: 13080011 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 13079952

                      
Query: 342      cgaact 347
                ||||||
Sbjct: 13079951 cgaact 13079946



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                          
Query: 350      agaccacctttgaggatgtttttccatcggaagcaacttctgtcgaggaatacctgca 407
                ||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct: 13078950 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctgca 13078893



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 62       cggcggcgatggccggcgtcgg 83
                ||||||||||||||||||||||
Sbjct: 13080495 cggcggcgatggccggcgtcgg 13080474
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11,
              complete sequence
          Length = 176637

 Score =  137 bits (69), Expect = 4e-29
 Identities = 90/97 (92%)
 Strand = Plus / Minus

                                                                          
Query: 190    cagaggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgc 249
              |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct: 161167 cagaggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgc 161108

                                                   
Query: 250    gccgaggcgccgtcacagtcgctctccgccaccaggt 286
              |||||||||||    ||||||||||||||||||||||
Sbjct: 161107 gccgaggcgcccgtgcagtcgctctccgccaccaggt 161071



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                          
Query: 105    ggagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgc 164
              |||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||
Sbjct: 161369 ggagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgc 161310

                                          
Query: 165    cctcacccctcacttccccgccctccag 192
              || |||||| ||||||||  ||||||||
Sbjct: 161309 ccccaccccgcacttccctcccctccag 161282



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                        
Query: 409    cagcttcatgaaatggcaattgtctcatccatccaaggagcacaaaaggacaacttaa 466
              |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 159726 cagcttcatgaaatggcaatcgtctcatccattcaagaagcacaaaaggacaacttaa 159669



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                          
Query: 282    caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 341
              ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || ||
Sbjct: 160934 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 160875

                    
Query: 342    cgaact 347
              ||||||
Sbjct: 160874 cgaact 160869



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                        
Query: 350    agaccacctttgaggatgtttttccatcggaagcaacttctgtcgaggaatacctgca 407
              ||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct: 159873 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctgca 159816



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 62     cggcggcgatggccggcgtcgg 83
              ||||||||||||||||||||||
Sbjct: 161418 cggcggcgatggccggcgtcgg 161397
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>ref|NM_115595.1| Arabidopsis thaliana unknown protein AT3G57350 mRNA, complete cds
          Length = 2628

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 397 gaatacctgcaacagcttcatgaaatggcaat 428
           ||||||||||||||| ||||||||||||||||
Sbjct: 346 gaatacctgcaacaggttcatgaaatggcaat 377
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>ref|NM_129725.2| Arabidopsis thaliana unknown protein AT2G41620 mRNA, complete cds
          Length = 2911

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 397 gaatacctgcaacagcttcatgaaatggc 425
           ||||||||||||||| |||||||||||||
Sbjct: 358 gaatacctgcaacaggttcatgaaatggc 386
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>gb|AY113905.1| Arabidopsis thaliana unknown protein (At2g41620) mRNA, complete cds
          Length = 2586

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 397 gaatacctgcaacagcttcatgaaatggc 425
           ||||||||||||||| |||||||||||||
Sbjct: 307 gaatacctgcaacaggttcatgaaatggc 335
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>gb|AY034907.1| Arabidopsis thaliana unknown protein (At2g41620) mRNA, complete cds
          Length = 2878

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 397 gaatacctgcaacagcttcatgaaatggc 425
           ||||||||||||||| |||||||||||||
Sbjct: 358 gaatacctgcaacaggttcatgaaatggc 386
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 72      ggccggcgtcggagccgatggcg 94
               |||||||||||||||||||||||
Sbjct: 1059520 ggccggcgtcggagccgatggcg 1059542
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>gb|AY021663.1| Oryza sativa microsatellite MRG3988 containing (TA)X32, closest to
           marker C198 , genomic sequence
          Length = 264

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 437 ccatccaaggagcacaaaaggacaacttaa 466
           |||| |||| ||||||||||||||||||||
Sbjct: 264 ccattcaagaagcacaaaaggacaacttaa 235
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>gb|AC120147.8| Mus musculus chromosome 19, clone RP24-223N20, complete sequence
          Length = 172853

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 434    catccatccaaggagcacaaaa 455
              ||||||||||||||||||||||
Sbjct: 139644 catccatccaaggagcacaaaa 139665
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 62    cggcggcgatggccggcgtcgg 83
             ||||||||||||||||||||||
Sbjct: 60167 cggcggcgatggccggcgtcgg 60146
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>gb|AC162456.3| Mus musculus chromosome 19, clone RP23-406F15, complete sequence
          Length = 173042

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 434    catccatccaaggagcacaaaa 455
              ||||||||||||||||||||||
Sbjct: 166961 catccatccaaggagcacaaaa 166982
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 246     ccgcgccgaggcgccgtcacagtcgc 271
               |||||||| |||||||||||||||||
Sbjct: 1339088 ccgcgccgcggcgccgtcacagtcgc 1339113
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>gb|AC157914.4| Mus musculus chromosome 19, clone RP24-284E14, complete sequence
          Length = 166967

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 434    catccatccaaggagcacaaaa 455
              ||||||||||||||||||||||
Sbjct: 113208 catccatccaaggagcacaaaa 113187
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>gb|AC090064.3| Homo sapiens chromosome 5 clone CTB-43C3, complete sequence
          Length = 124882

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   gcagctcaccagagacctcaa 335
             |||||||||||||||||||||
Sbjct: 93519 gcagctcaccagagacctcaa 93539
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>gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complete sequence
          Length = 240957

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   gcagctcaccagagacctcaa 335
             |||||||||||||||||||||
Sbjct: 67614 gcagctcaccagagacctcaa 67634
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 62       cggcggcgatggccggcgtcg 82
                |||||||||||||||||||||
Sbjct: 16070864 cggcggcgatggccggcgtcg 16070884
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 153     cgagcaggccgccctcacccc 173
               |||||||||||||||||||||
Sbjct: 3564437 cgagcaggccgccctcacccc 3564457
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>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1328_D07
          Length = 155007

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    cggcggcgatggccggcgtcg 82
             |||||||||||||||||||||
Sbjct: 71077 cggcggcgatggccggcgtcg 71097
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>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence
          Length = 158943

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   gaggtgctctccaccaagct 230
             ||||||||||||||||||||
Sbjct: 35514 gaggtgctctccaccaagct 35533
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    gctggcgcgcgaggggatca 307
              ||||||||||||||||||||
Sbjct: 188132 gctggcgcgcgaggggatca 188151
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    ccaccaagctcaaggccaag 240
              ||||||||||||||||||||
Sbjct: 869628 ccaccaagctcaaggccaag 869609
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>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence
          Length = 184010

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gaggtgctctccaccaagct 230
             ||||||||||||||||||||
Sbjct: 69453 gaggtgctctccaccaagct 69434
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     cggcggcgatggccggcgtc 81
              ||||||||||||||||||||
Sbjct: 152689 cggcggcgatggccggcgtc 152670
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    cggcggcgatggccggcgtc 81
             ||||||||||||||||||||
Sbjct: 75743 cggcggcgatggccggcgtc 75724
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 239     agacgatccgcgccgaggcg 258
               ||||||||||||||||||||
Sbjct: 1983654 agacgatccgcgccgaggcg 1983673
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 82      ggagccgatggcggaggaga 101
               ||||||||||||||||||||
Sbjct: 6280661 ggagccgatggcggaggaga 6280680
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>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1116_C08
          Length = 102317

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ggagccgatggcggaggaga 101
             ||||||||||||||||||||
Sbjct: 31221 ggagccgatggcggaggaga 31240
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>gb|AC133158.2| Mus musculus BAC clone RP24-491F15 from 8, complete sequence
          Length = 172481

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    ccctcacccctcacttcccc 183
              ||||||||||||||||||||
Sbjct: 167917 ccctcacccctcacttcccc 167936
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>gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complete sequence
          Length = 204183

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    ccctcacccctcacttcccc 183
              ||||||||||||||||||||
Sbjct: 108146 ccctcacccctcacttcccc 108127


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,531,832
Number of Sequences: 3902068
Number of extensions: 3531832
Number of successful extensions: 79235
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78330
Number of HSP's gapped (non-prelim): 900
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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