ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predic... 107 2e-20
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
4dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
5gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 62 8e-07
6gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 62 8e-07
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 8e-07
8dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
9dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
10dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
11dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 8e-07
13ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.19
14ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.19
15emb|X80052.1|NCFOX2 N.crassa fox-2 gene 44 0.19
16gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.0

>ref|XM_462832.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  107 bits (54), Expect = 2e-20
 Identities = 63/66 (95%)
 Strand = Plus / Plus

                                                                       
Query: 140 atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199
           ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 249 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 308

                 
Query: 200 catggc 205
           ||||||
Sbjct: 309 catggc 314



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 2e-20
 Identities = 63/66 (95%)
 Strand = Plus / Minus

                                                                            
Query: 140      atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199
                ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 10025975 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 10025916

                      
Query: 200      catggc 205
                ||||||
Sbjct: 10025915 catggc 10025910



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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F09
          Length = 132713

 Score =  107 bits (54), Expect = 2e-20
 Identities = 63/66 (95%)
 Strand = Plus / Minus

                                                                          
Query: 140    atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199
              ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 106257 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 106198

                    
Query: 200    catggc 205
              ||||||
Sbjct: 106197 catggc 106192



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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  107 bits (54), Expect = 2e-20
 Identities = 63/66 (95%)
 Strand = Plus / Minus

                                                                          
Query: 140    atccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgc 199
              ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 120468 atccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgccgc 120409

                    
Query: 200    catggc 205
              ||||||
Sbjct: 120408 catggc 120403



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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 147   gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
             |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 21374



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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24
              map S20116S, complete sequence
          Length = 174210

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                         
Query: 147    gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
              |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 170839



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                          
Query: 147     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 3653702



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>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full
           insert sequence
          Length = 3332

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 169



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>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full
           insert sequence
          Length = 3332

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 169



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>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full
           insert sequence
          Length = 1667

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 75  gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 133



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>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full
           insert sequence
          Length = 3363

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 147 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
           |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 200



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                          
Query: 147     gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggc 205
               |||||||| ||||| ||||| || || ||||||||||||||||||||| || |||||||
Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggc 3662396



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>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 181  tcgacaagggctccgccgccat 202
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183



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>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial
            mRNA
          Length = 2685

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 181  tcgacaagggctccgccgccat 202
            ||||||||||||||||||||||
Sbjct: 2162 tcgacaagggctccgccgccat 2183



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>emb|X80052.1|NCFOX2 N.crassa fox-2 gene
          Length = 3401

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 181  tcgacaagggctccgccgccat 202
            ||||||||||||||||||||||
Sbjct: 2665 tcgacaagggctccgccgccat 2686



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    cgccgtcgccctccggcgcg 126
              ||||||||||||||||||||
Sbjct: 612231 cgccgtcgccctccggcgcg 612250


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,082,193
Number of Sequences: 3902068
Number of extensions: 1082193
Number of successful extensions: 18918
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18832
Number of HSP's gapped (non-prelim): 86
length of query: 237
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 215
effective length of database: 17,147,199,772
effective search space: 3686647950980
effective search space used: 3686647950980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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