ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl22d08 |
|---|---|
| Clone Library Name | barley_pub |
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = +1 Query: 178 AAGDPRFPIALLAVAAGDGDQGTRI-----AAAAYLKIFARRNMEGGLSSSDLYR 327 AAGDP P A L + DGD A K RR G LS+ DL R Sbjct: 885 AAGDPAEPTAALPIIRSDGDDSEAATEQLNARGTSDKTRQRRRGGGALSAQDLLR 939
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 226 GDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFRDQLAQ 351 G+ D G + A+LKI A+ N++ YR+F D + Q Sbjct: 350 GNDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQ 391
>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor| Length = 1115 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%) Frame = +1 Query: 148 AATAGLDRISAAGDPRFPIALLAVAAGDG----------DQGTRIAAAA 264 AA AG +AAGD ++ + AAGDG D GT AAA Sbjct: 933 AAPAGASSAAAAGDSPAALSAVPAAAGDGALVPSFMSIDDDGTAAVAAA 981
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -3 Query: 361 EAEPEQAGRETPCTDRTTRAPLPC 290 E P+ A ETP DR R PLPC Sbjct: 734 EETPDSA--ETPAEDRAGRGPLPC 755
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 27.7 bits (60), Expect = 7.2 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Frame = +1 Query: 103 SLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD---QGTRIAAAAYLK 273 S + A + A + VDA TA +AA DP P+A LA A + TR+A A + Sbjct: 1189 STVDAAVRAHRVLVDAVTA---LGAAASDPASPLAFLAAMADSAAGYVKATRLALDARVA 1245 Query: 274 IFARRNMEGGLSSSDLYREFR 336 I + G +++DL + R Sbjct: 1246 IAQLTTL--GSAAADLVVQVR 1264
>MTNA_LEPIN (Q8F2A8) Probable methylthioribose-1-phosphate isomerase (EC| 5.3.1.23) (MTR-1-P isomerase) Length = 364 Score = 27.7 bits (60), Expect = 7.2 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%) Frame = +1 Query: 142 VDAATAGLDRISAAGDP-----RFPIALLA--------VAAGDGDQGTRIAAAAYLKIFA 282 +DA G DRI++ GD +P+A++A VAA RI +Y+ I Sbjct: 234 IDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEM 293 Query: 283 RRNME----GGLSSSD 318 R+ E G L SD Sbjct: 294 RKEEEITSFGFLKDSD 309
>MTNA_LEPIC (Q72T46) Probable methylthioribose-1-phosphate isomerase (EC| 5.3.1.23) (MTR-1-P isomerase) Length = 364 Score = 27.7 bits (60), Expect = 7.2 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%) Frame = +1 Query: 142 VDAATAGLDRISAAGDP-----RFPIALLA--------VAAGDGDQGTRIAAAAYLKIFA 282 +DA G DRI++ GD +P+A++A VAA RI +Y+ I Sbjct: 234 IDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEM 293 Query: 283 RRNME----GGLSSSD 318 R+ E G L SD Sbjct: 294 RKEEEITSFGFLKDSD 309
>PLSL_HUMAN (P13796) Plastin-2 (L-plastin) (Lymphocyte cytosolic protein 1)| (LCP-1) (LC64P) Length = 627 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 217 VAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFR 336 +A GD DQ RI+ ++KIF GL S+D+ + FR Sbjct: 58 MATGDLDQDGRISFDEFIKIF------HGLKSTDVAKTFR 91
>XDHD_ECOLI (Q46814) Probable hypoxanthine oxidase xdhD (EC 1.-.-.-)| Length = 956 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = -1 Query: 348 SKLVAKLPVQIGRREPPFHVAPGENFQVSRGSYSCTLITIPC 223 S+ VAK+ V++G ++ A +F+ + G Y +T+PC Sbjct: 483 SRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPC 524
>XDHD_ECO57 (Q8XD64) Probable hypoxanthine oxidase xdhD (EC 1.-.-.-)| Length = 956 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = -1 Query: 348 SKLVAKLPVQIGRREPPFHVAPGENFQVSRGSYSCTLITIPC 223 S+ VAK+ V++G ++ A +F+ + G Y +T+PC Sbjct: 483 SRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPC 524
>PUR6_METSM (P22348) Probable phosphoribosylaminoimidazole carboxylase (EC| 4.1.1.21) (AIR carboxylase) (AIRC) Length = 339 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = +1 Query: 142 VDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDL 321 VD +GLD + ++ +P + V GD G I AA L ++ + L S + Sbjct: 88 VDVKVSGLDALYSSVQMPYPSPVATVGIDRGDNGA-ILAARILGLYDEEIRKKVLESKEG 146 Query: 322 YRE 330 YR+ Sbjct: 147 YRQ 149
>CH60_THEBR (Q60024) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 540 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +1 Query: 139 SVDAATAGLDRISAAGDPRFPIALLA-VAAGDGDQGTRIAAA 261 +VDAA GL RIS D + IA +A ++A D + G IA A Sbjct: 121 AVDAAVEGLKRISKPIDNKESIAHVASISAADEEIGKLIAEA 162
>Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ| Length = 1039 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 148 AATAGLDRISAAG-DPRFPIALLAVAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDL 321 +A+ D ++ G DPR I L VAA GD+G + Y+ + N+ G S++ Sbjct: 462 SASVTEDEVARIGHDPRVAIGLSRVAASLGDEGQNL---VYIAVEQHLNVRGMSKPSEI 517 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,672,440 Number of Sequences: 219361 Number of extensions: 417288 Number of successful extensions: 1318 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1302 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1317 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
