ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl23c04 |
|---|---|
| Clone Library Name | barley_pub |
>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 457 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +2 Query: 8 PLPSPA*TQLSRPHLQSPFHSLSLPPGRGLNP 103 P PSP Q + HL P H LPP L P Sbjct: 335 PAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKP 366
>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 458 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +2 Query: 8 PLPSPA*TQLSRPHLQSPFHSLSLPPGRGLNP 103 P PSP Q + HL P H LPP L P Sbjct: 335 PAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKP 366
>LAX3_ORYSA (Q7XGU4) Auxin transporter-like protein 3| Length = 547 Score = 28.5 bits (62), Expect = 5.0 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +3 Query: 99 IQHGNCLALFPRTPW 143 + H N LAL PRTPW Sbjct: 311 LTHSNALALLPRTPW 325
>EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-gamma 2)| (eEF-1B gamma 2) Length = 413 Score = 28.5 bits (62), Expect = 5.0 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -1 Query: 200 GSALQERHRYPVPGTTQPEPRSPREQCEAIAVLDLSPGPEGERE 69 G A Q PVP P+P P+E+ + A + +P P E E Sbjct: 204 GDAKQTEAVPPVPTKKAPQPAKPKEEPKKAAPVAEAPKPAEEEE 247
>HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 459 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +2 Query: 8 PLPSPA*TQLSRPHLQSPFHSLSLPPGRGLNP 103 P PSP Q + HL P H LPP L P Sbjct: 336 PAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKP 367
>SYD_CAEEL (Q03577) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 531 Score = 28.1 bits (61), Expect = 6.6 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = -1 Query: 191 LQERHRYPVPGTTQPEPRSPREQCEAIAVLDLSPGPEGERENGMEIGD 48 LQ+ ++ + P P + CE +L RENG+EIGD Sbjct: 347 LQQNYQDEIAAVGNQYPAEPFQFCEPPLILKYPDAITLLRENGIEIGD 394
>INSM1_HUMAN (Q01101) Insulinoma-associated protein 1 (Zinc finger protein IA-1)| Length = 510 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -1 Query: 170 PVPGTTQPEPRSPREQCEAIAVLDLSPGPE 81 PVPG P P + R A L +PGP+ Sbjct: 48 PVPGPLPPPPPAERAHAALAAALACAPGPQ 77
>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3206 Score = 28.1 bits (61), Expect = 6.6 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +2 Query: 80 PPGRGLNPARQLP-RIVPEDSLVLAASYQGQGSGA 181 PPGR + Q P I EDSL Q QGSGA Sbjct: 1472 PPGREVEFKTQFPVTIATEDSLSFDQFVQAQGSGA 1506
>PYRD_STRAW (Q827Q6) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 368 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 98 NPARQLPRIVPEDSLVLAASYQGQGSGAVLGAL 196 NP ++L R+VP+ +L+ + +GS AV L Sbjct: 100 NPKKRLFRLVPDRALINRMGFNNEGSAAVAARL 132
>RN2H_SYNY3 (P73177) Hypothetical ribonuclease sll1290 (EC 3.1.-.-)| Length = 666 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -1 Query: 185 ERHRYPVPGTTQPEPRSPREQCEAIAVLDLSPGPEGE 75 + H PVP QP+P P ++ +L L PGP E Sbjct: 470 QEHGIPVPFRGQPQPELPSDE----ELLSLPPGPVRE 502
>SIRB1_HUMAN (O00241) Signal-regulatory protein beta-1 precursor (SIRP-beta-1)| (CD172b antigen) Length = 398 Score = 27.7 bits (60), Expect = 8.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = +2 Query: 11 LPSPA*TQLSRPHLQSPFHSLSLPPGR--GLNPARQLPRIVPEDSLVLAA 154 +P PA S PHL SPF ++L GR G+ +L I PE S+ +AA Sbjct: 1 MPVPA----SWPHLPSPFLLMTLLLGRLTGVAGEDELQVIQPEKSVSVAA 46
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 27.7 bits (60), Expect = 8.6 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = +2 Query: 17 SPA*TQLSRPHLQSPFHSL--SLPPGRGLNPARQLPRIVP 130 SP LSR SP H +PP RG+ PAR P P Sbjct: 1248 SPRSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDGTP 1287
>PTPRG_CHICK (Q98936) Receptor-type tyrosine-protein phosphatase gamma precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma) Length = 1422 Score = 27.7 bits (60), Expect = 8.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 170 PVPGTTQPEPRSPREQCEAIAVLDLSPGPEGERENGMEIGDG 45 PV TT+P SP + ++ D EGE++ E DG Sbjct: 551 PVVATTEPAAASPGPERDSALTKDGEGAEEGEKDEKSESEDG 592 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,712,540 Number of Sequences: 219361 Number of extensions: 674595 Number of successful extensions: 2511 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2418 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2511 length of database: 80,573,946 effective HSP length: 42 effective length of database: 71,360,784 effective search space used: 1712658816 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
