ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl23g05 |
|---|---|
| Clone Library Name | barley_pub |
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 33.1 bits (74), Expect = 0.22 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +1 Query: 31 HAAPPSRLRTTRPPNPSQPASAVAEPNPPR 120 H +P +R T RPP + A+A+A P+PPR Sbjct: 711 HGSPRTRDPTPRPPGLPEEATALAAPSPPR 740
>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1281 Score = 32.0 bits (71), Expect = 0.49 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +1 Query: 1 KAEILQKINPHAAPPSRLRTTRPPNPSQPAS-AVAEPN 111 K L+ + P AP +R TTR P P++PAS VA P+ Sbjct: 127 KTSKLRGLKPKKAPTARKTTTRRPKPTRPASTGVAGPS 164
>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 32.0 bits (71), Expect = 0.49 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +1 Query: 1 KAEILQKINPHAAPPSRLRTTRPPNPSQPAS-AVAEPN 111 K L+ + P AP +R TTR P P++PAS VA P+ Sbjct: 127 KTSKLRGLKPKKAPTARKTTTRRPKPTRPASTGVAGPS 164
>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) (p135) Length = 1278 Score = 31.2 bits (69), Expect = 0.84 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 1 KAEILQKINPHAAPPSRLRTTRPPNPSQPAS 93 K L+ + P AP +R TTR P P++PAS Sbjct: 127 KTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157
>KCNK4_HUMAN (Q9NYG8) Potassium channel subfamily K member 4 (TWIK-related| arachidonic acid-stimulated potassium channel protein) (TRAAK) (Two pore K(+) channel KT4.1) Length = 393 Score = 30.0 bits (66), Expect = 1.9 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +1 Query: 4 AEILQKINPHAAPPSRLRTTRPPN--PSQPASAVAEPNPP 117 A + Q+ P A PP + + PP P+QP P+PP Sbjct: 284 ARVTQRAGPAAPPPEKEQPLLPPPPCPAQPLGRPRSPSPP 323
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 29.6 bits (65), Expect = 2.5 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 11 SSRK*TPTQHRRVASVPLAPRTLASPPAPSPNRIRPA 121 S ++ P + +A VPLAP +PP+P+P R A Sbjct: 1123 SDKEAPPPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159
>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)| (Phosphorylethanolamine transferase) (CTP:phosphoethanolamine cytidylyltransferase) Length = 404 Score = 29.6 bits (65), Expect = 2.5 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -2 Query: 111 IRFGDGAGGLARVRGASGTEATRRCCVGVY 22 IR G GAGG A ++G G R C G Y Sbjct: 2 IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31
>ANTR1_MOUSE (Q9CZ52) Anthrax toxin receptor 1 precursor (Tumor endothelial| marker 8) Length = 562 Score = 29.6 bits (65), Expect = 2.5 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 25 NPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 +P + PP+ + T PP P P A + P PP Sbjct: 500 HPSSPPPAPIYTPPPPAPHCPPPAPSAPTPP 530
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 29.3 bits (64), Expect = 3.2 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 28 PHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 P PP T PP+P P + A P PP Sbjct: 274 PPPRPPFPANTPMPPSPPSPPPSPAPPTPP 303 Score = 28.1 bits (61), Expect = 7.1 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 28 PHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 P APPS PP+P+ P+ A P PP Sbjct: 46 PSPAPPS----PAPPSPAPPSPAPPSPGPP 71
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 29.3 bits (64), Expect = 3.2 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 40 PPSRLRTTRPPNPSQPASAVAEPNPP 117 PPSR T PP P +VA P PP Sbjct: 313 PPSRAPTAAPPPPPPSRPSVAVPPPP 338 Score = 28.1 bits (61), Expect = 7.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 40 PPSRLRTTRPPNPSQPASAVAEPNPP 117 PP+R R PP PS+ +A P PP Sbjct: 302 PPARGRGAPPPPPSRAPTAAPPPPPP 327
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.9 bits (63), Expect = 4.2 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +1 Query: 28 PHAA----PPSRLRTTRPPNPSQPASAVAEPNPP 117 PH++ PP+R R PP PS+ +A P PP Sbjct: 294 PHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPP 327 Score = 27.7 bits (60), Expect = 9.3 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 34 AAPPSRLRTTRPPNPSQPASAVAEPNPP 117 A PP R PP P+ P+SA + P PP Sbjct: 334 APPPPPNRMYPPPLPALPSSAPSGPPPP 361 Score = 27.7 bits (60), Expect = 9.3 Identities = 12/26 (46%), Positives = 12/26 (46%) Frame = +1 Query: 40 PPSRLRTTRPPNPSQPASAVAEPNPP 117 PPSR T PP P V P PP Sbjct: 313 PPSRAPTAAPPPPPPSRPGVGAPPPP 338
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.9 bits (63), Expect = 4.2 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +1 Query: 28 PHAA----PPSRLRTTRPPNPSQPASAVAEPNPP 117 PH++ PP+R R PP PS+ +A P PP Sbjct: 291 PHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPP 324
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.9 bits (63), Expect = 4.2 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +1 Query: 28 PHAA----PPSRLRTTRPPNPSQPASAVAEPNPP 117 PH++ PP+R R PP PS+ +A P PP Sbjct: 291 PHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPP 324
>ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog| Length = 328 Score = 28.5 bits (62), Expect = 5.5 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 16 QKINPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 Q++ P +APP + +P PSQ VA+P PP Sbjct: 128 QQVQP-SAPPVQPPQQQPAPPSQAPQPVAQPAPP 160
>ZIPA_SALTI (P0A2N7) Cell division protein zipA homolog| Length = 328 Score = 28.5 bits (62), Expect = 5.5 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 16 QKINPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 Q++ P +APP + +P PSQ VA+P PP Sbjct: 128 QQVQP-SAPPVQPPQQQPAPPSQAPQPVAQPAPP 160
>TF65_CHICK (P98152) Transcription factor p65 (Nuclear factor NF-kappa-B p65| subunit) Length = 558 Score = 28.5 bits (62), Expect = 5.5 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Frame = +1 Query: 25 NPHAAPPSRLRTTR--PPNPSQPASAVAEPNPP 117 NP PP R+ PP P QP S V P P Sbjct: 329 NPEPRPPRRIAVPSRPPPAPQQPPSMVGAPPAP 361
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 28.5 bits (62), Expect = 5.5 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +2 Query: 8 RSSRK*TPTQHRRVASVPLAPRTLASPPAPSP 103 RS R + + V V PR +ASPPAPSP Sbjct: 76 RSPRSFLAKKLQLVRRVGAPPRRMASPPAPSP 107
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 28.5 bits (62), Expect = 5.5 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 16 QKINPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 Q + P A PP+ PP+ + PA A A P+PP Sbjct: 399 QGLAPPAQPPA------PPSATLPAGAAAPPSPP 426
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 28.1 bits (61), Expect = 7.1 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +1 Query: 22 INPHAAPPSRLRTTRPPNPSQP---ASAVAEPNPP 117 I+ A PP + +PP PS P AS+ A P PP Sbjct: 277 IHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPP 311
>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)| Length = 1007 Score = 28.1 bits (61), Expect = 7.1 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +1 Query: 28 PHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 PH PP++ + T+PP Q S++ P P Sbjct: 721 PHETPPTQSQQTQPPVAPQAPSSILLPAAP 750
>CSP_PLABE (P06915) Circumsporozoite protein precursor (CS)| Length = 339 Score = 28.1 bits (61), Expect = 7.1 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = +1 Query: 25 NPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 NP+ PP PPNP+ P A PP Sbjct: 105 NPNDPPPPNPNDPPPPNPNDPPPPNANDPPP 135
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 28.1 bits (61), Expect = 7.1 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 11 SSRK*TPTQHRRVASVPLAPRTLASPPAPSPNR 109 S ++ P + + VPLAP +PP+P+P R Sbjct: 1123 SDKEAPPPKEGTLTQVPLAPPPPGAPPSPAPAR 1155
>CSP_PLABA (P23093) Circumsporozoite protein precursor (CS)| Length = 347 Score = 28.1 bits (61), Expect = 7.1 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = +1 Query: 25 NPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 NP+ PP PPNP+ P A PP Sbjct: 113 NPNDPPPPNPNDPPPPNPNDPPPPNANDPPP 143 Score = 27.7 bits (60), Expect = 9.3 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = +1 Query: 25 NPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 N + PP PPNP+ PA A PP Sbjct: 169 NANDPPPPNANDPPPPNPNDPAPPNANDPPP 199
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 28.1 bits (61), Expect = 7.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 11 SSRK*TPTQHRRVASVPLAPRTLASPPAPSPNRIRPA 121 S ++ P + + VPLAP +PP+P+P R A Sbjct: 1118 SDKEAPPPKEGVLGQVPLAPPQPGAPPSPAPARFSTA 1154
>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1615 Score = 28.1 bits (61), Expect = 7.1 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = +1 Query: 1 KAEILQKINPHAAPPSRLRTTRPPN-----PSQPASAVAEPNPPR 120 +A +++P +P +R +PP P +PA AEP PR Sbjct: 435 RAPATARVSPPESPRARAAAAQPPTEHGPPPPRPAPGPAEPPEPR 479
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 27.7 bits (60), Expect = 9.3 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +2 Query: 2 KRRSSRK*TPTQHRRVASVPLAPRTLASPP---APSPNRIRP 118 +RRS P + RR + P RT + PP +PSP R P Sbjct: 571 RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 612
>HXB4_FUGRU (O13074) Homeobox protein Hox-B4 (HOXB-4)| Length = 251 Score = 27.7 bits (60), Expect = 9.3 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 4 AEILQKINPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 A ++ H PPS L+TT P S +V P+PP Sbjct: 80 ASVVMSPRGHVLPPSGLQTTPVPEQSHRCESVT-PSPP 116
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 27.7 bits (60), Expect = 9.3 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +2 Query: 2 KRRSSRK*TPTQHRRVASVPLAPRTLASPP---APSPNRIRP 118 +RRS P + RR + P RT + PP +PSP R P Sbjct: 557 RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 27.7 bits (60), Expect = 9.3 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +1 Query: 28 PHAAPPSRLRTTRPPNPSQPASAVAEPNP 114 P+A P+ TT PN + P AV P P Sbjct: 518 PNATSPTPAVTTPTPNATSPTPAVTTPTP 546
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 27.7 bits (60), Expect = 9.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +1 Query: 34 AAPPSRLRTTRPPNPSQPASAVAEPNPP 117 A PP +T++PP PS P + PP Sbjct: 273 AVPPPPSQTSKPPVPSTPRPGLGSQAPP 300
>SCNAA_MOUSE (Q61180) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 699 Score = 27.7 bits (60), Expect = 9.3 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%) Frame = +1 Query: 28 PHAAPPSRLRTTRPPNPSQPA----SAVAEPNP 114 PH P RLRT PPNP++ A S+V + NP Sbjct: 212 PH--PLQRLRTPPPPNPARSARSASSSVRDNNP 242
>EFNB1_XENLA (O13097) Ephrin-B1 precursor (EPH-related receptor tyrosine kinase| ligand 2) (LERK-2) (ELK ligand) (ELK-L) (XlERK) Length = 327 Score = 27.7 bits (60), Expect = 9.3 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 7 EILQKI--NPHAAPPSRLRTTRPPNPSQPASAVAEPNP 114 +I+ K+ +P+A PP +L TTRP + +A P Sbjct: 151 KIIMKVGQDPNAVPPEQLTTTRPSKEADNTGKIATFGP 188
>ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc finger protein)| Length = 2025 Score = 27.7 bits (60), Expect = 9.3 Identities = 13/39 (33%), Positives = 15/39 (38%) Frame = +1 Query: 1 KAEILQKINPHAAPPSRLRTTRPPNPSQPASAVAEPNPP 117 K E+ +K P P L PP P P P PP Sbjct: 1237 KVELAEKNEPSQVPEQMLALLPPPPPPPPPPPPPPPPPP 1275
>WDR43_HUMAN (Q15061) WD-repeat protein 43| Length = 720 Score = 27.7 bits (60), Expect = 9.3 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = +1 Query: 7 EILQKINPHAAPPSRLR--TTRPPNPSQPASAV 99 E+ + HA P S L T RPPN SQP + Sbjct: 242 EVYRHFTGHATPVSSLMFTTIRPPNESQPFDGI 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.307 0.126 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,487,384 Number of Sequences: 219361 Number of extensions: 231070 Number of successful extensions: 2533 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1854 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2463 length of database: 80,573,946 effective HSP length: 15 effective length of database: 77,283,531 effective search space used: 1854804744 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
