ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA, complete cds Length = 2923 Score = 726 bits (366), Expect = 0.0 Identities = 432/450 (96%), Gaps = 3/450 (0%) Strand = Plus / Plus Query: 53 cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 112 ||||| |||||||||||| ||| ||| || |||||||||||||||||||||||||||||| Sbjct: 4 cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62 Query: 113 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 172 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 63 gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122 Query: 173 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 182 Query: 233 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 242 Query: 293 cggggaagacctcttcaacgacgactacctcaatgattaccggagaatggatgagcagga 352 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 243 tggggaggacctcttcaacgacgactacctcaatgattaccgaagaatggatgagcagga 302 Query: 353 tcactatgagtccgttgggttagatgactccatagaggatgagaggaacctggatgagat 412 ||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 303 tcagtatgagtcggttgggttagacgactcgatagaggatgagaggaacctggatgagat 362 Query: 413 catggctgatcgaagggctgcagaagcggaacttcatgcaagggatgtgaggactggtgc 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 catggctgatcgaagggctgcagaagcggaacttcatgcaagggatgtgaggactggtgc 422 Query: 473 -acgtctgatcgaaaa-tgcctcgtatgct 500 || ||||||||||| | ||||||||||| Sbjct: 423 aacagctgatcgaaaattacctcgtatgct 452
>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene, exons 1 through 18 and complete sequence Length = 8809 Score = 440 bits (222), Expect = e-120 Identities = 231/234 (98%) Strand = Plus / Plus Query: 92 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 151 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454 Query: 152 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514 Query: 212 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2515 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 2574 Query: 272 ccgcgacgaggaggaagacgacggggaagacctcttcaacgacgactacctcaa 325 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 2575 ccgcgacgaggaggaagacgatggggaggacctcttcaacgacgactacctcaa 2628 Score = 250 bits (126), Expect = 4e-63 Identities = 164/174 (94%), Gaps = 2/174 (1%) Strand = Plus / Plus Query: 329 ttaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccataga 388 |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 3388 ttaccgaagaatggatgagcaggatcagtatgagtcggttgggttagacgactcgataga 3447 Query: 389 ggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagcggaacttca 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3448 ggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagcggaacttca 3507 Query: 449 tgcaagggatgtgaggactggtgc-acgtctgatcgaaaa-tgcctcgtatgct 500 |||||||||||||||||||||||| || ||||||||||| | ||||||||||| Sbjct: 3508 tgcaagggatgtgaggactggtgcaacagctgatcgaaaattacctcgtatgct 3561 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 1 ctccccacaattccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctc 60 |||||||| ||||||||||||||||||||||||||||||| | | | || ||||| || Sbjct: 2190 ctccccaccattccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtc 2249 Query: 61 ctccacaggacccttctcggagcccgcggatgg 93 |||||||||| ||| ||| || ||||||||||| Sbjct: 2250 ctccacaggagcctcctccgaccccgcggatgg 2282
>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full insert sequence Length = 3214 Score = 283 bits (143), Expect = 3e-73 Identities = 228/255 (89%), Gaps = 6/255 (2%) Strand = Plus / Plus Query: 219 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 278 |||||||||||||||||||| |||||||||||||||||||||| | || |||| | Sbjct: 234 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 287 Query: 279 gaggaggaagacgacggggaagacctcttcaacgacgactacctcaatgattaccggaga 338 |||||||| || |||||||| ||||||||||||||| |||||||| ||||||||||||| Sbjct: 288 gaggaggaggaggacggggaggacctcttcaacgacaactacctcgatgattaccggagg 347 Query: 339 atggatgagcaggatcactatgagtccgttgggttagatgactccatagaggatgagagg 398 |||||||||||||| || ||||| || ||||||||||||||||| ||||||||||| ||| Sbjct: 348 atggatgagcaggaccagtatgaatcggttgggttagatgactcgatagaggatgaaagg 407 Query: 399 aacctggatgagatcatggctgatcgaagggctgcagaagcggaacttcatgcaagggat 458 |||||||||||||||||||| ||| |||||||||| ||||| |||||| ||||||||||| Sbjct: 408 aacctggatgagatcatggcagatagaagggctgctgaagcagaacttgatgcaagggat 467 Query: 459 gtgaggactggtgca 473 ||||||||||||||| Sbjct: 468 gtgaggactggtgca 482 Score = 194 bits (98), Expect = 2e-46 Identities = 119/126 (94%) Strand = Plus / Plus Query: 89 gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 148 |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| || Sbjct: 83 gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142 Query: 149 ccggctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 208 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202 Query: 209 cgacga 214 |||||| Sbjct: 203 cgacga 208
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15, complete sequence Length = 149035 Score = 198 bits (100), Expect = 1e-47 Identities = 136/148 (91%) Strand = Plus / Plus Query: 326 tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 385 |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| || Sbjct: 98224 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 98283 Query: 386 agaggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagcggaact 445 ||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||| ||||| Sbjct: 98284 agaggatgaaaggaacctggatgagatcatggcagatagaagggctgctgaagcagaact 98343 Query: 446 tcatgcaagggatgtgaggactggtgca 473 | |||||||||||||||||||||||||| Sbjct: 98344 tgatgcaagggatgtgaggactggtgca 98371 Score = 188 bits (95), Expect = 1e-44 Identities = 113/119 (94%) Strand = Plus / Plus Query: 96 gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 155 |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||| Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325 Query: 156 ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 214 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384 Score = 89.7 bits (45), Expect = 8e-15 Identities = 91/105 (86%), Gaps = 6/105 (5%) Strand = Plus / Plus Query: 219 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 278 |||||||||||||||||||| |||||||||||||||||||||| | || |||| | Sbjct: 97410 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 97463 Query: 279 gaggaggaagacgacggggaagacctcttcaacgacgactacctc 323 |||||||| || |||||||| ||||||||||||||| |||||||| Sbjct: 97464 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 97508
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 198 bits (100), Expect = 1e-47 Identities = 136/148 (91%) Strand = Plus / Plus Query: 326 tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 385 |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| || Sbjct: 16457625 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16457684 Query: 386 agaggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagcggaact 445 ||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||| ||||| Sbjct: 16457685 agaggatgaaaggaacctggatgagatcatggcagatagaagggctgctgaagcagaact 16457744 Query: 446 tcatgcaagggatgtgaggactggtgca 473 | |||||||||||||||||||||||||| Sbjct: 16457745 tgatgcaagggatgtgaggactggtgca 16457772 Score = 188 bits (95), Expect = 1e-44 Identities = 113/119 (94%) Strand = Plus / Plus Query: 96 gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 155 |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||| Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726 Query: 156 ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 214 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785 Score = 89.7 bits (45), Expect = 8e-15 Identities = 91/105 (86%), Gaps = 6/105 (5%) Strand = Plus / Plus Query: 219 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 278 |||||||||||||||||||| |||||||||||||||||||||| | || |||| | Sbjct: 16456811 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16456864 Query: 279 gaggaggaagacgacggggaagacctcttcaacgacgactacctc 323 |||||||| || |||||||| ||||||||||||||| |||||||| Sbjct: 16456865 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16456909
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 198 bits (100), Expect = 1e-47 Identities = 136/148 (91%) Strand = Plus / Plus Query: 326 tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 385 |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| || Sbjct: 16548629 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16548688 Query: 386 agaggatgagaggaacctggatgagatcatggctgatcgaagggctgcagaagcggaact 445 ||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||| ||||| Sbjct: 16548689 agaggatgaaaggaacctggatgagatcatggcagatagaagggctgctgaagcagaact 16548748 Query: 446 tcatgcaagggatgtgaggactggtgca 473 | |||||||||||||||||||||||||| Sbjct: 16548749 tgatgcaagggatgtgaggactggtgca 16548776 Score = 188 bits (95), Expect = 1e-44 Identities = 113/119 (94%) Strand = Plus / Plus Query: 96 gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 155 |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||| Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730 Query: 156 ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 214 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789 Score = 89.7 bits (45), Expect = 8e-15 Identities = 91/105 (86%), Gaps = 6/105 (5%) Strand = Plus / Plus Query: 219 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 278 |||||||||||||||||||| |||||||||||||||||||||| | || |||| | Sbjct: 16547815 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16547868 Query: 279 gaggaggaagacgacggggaagacctcttcaacgacgactacctc 323 |||||||| || |||||||| ||||||||||||||| |||||||| Sbjct: 16547869 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16547913
>gb|AY111848.1| Zea mays CL12933_1 mRNA sequence Length = 632 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 411 atcatggctgatcgaagggctgcagaagcggaacttcatgcaagggatgtgaggactggt 470 |||||||||||||||||||| || |||||||| ||| |||||||||| |||||||||||| Sbjct: 27 atcatggctgatcgaagggccgcggaagcggagcttgatgcaagggaagtgaggactggt 86 Query: 471 gca 473 ||| Sbjct: 87 gca 89
>gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA Length = 2972 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 173 cagccgcggcgccaccgacccgtcctcct 201 ||||| ||||||||||||| ||||||||| Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
>gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA Length = 2971 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 173 cagccgcggcgccaccgacccgtcctcct 201 ||||| ||||||||||||| ||||||||| Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02) partial mRNA Length = 507 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 actcggacgacgatggcgagg 222 ||||||||||||||||||||| Sbjct: 479 actcggacgacgatggcgagg 499
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 actcggacgacgatggcgagg 222 ||||||||||||||||||||| Sbjct: 28850 actcggacgacgatggcgagg 28830
>gb|AY861166.1| Cottus gobio microsatellite Cott105 sequence Length = 711 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 274 gcgacgaggaggaagacgacggggaagac 302 ||||||||||||||||||| | ||||||| Sbjct: 297 gcgacgaggaggaagacgaggaggaagac 269
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 cgacgatggcgaggcggaggt 229 ||||||||||||||||||||| Sbjct: 1468047 cgacgatggcgaggcggaggt 1468027
>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163764 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 173 cagccgcggcgccaccgacccgtcctcct 201 ||||| ||||||||||||| ||||||||| Sbjct: 58418 cagccacggcgccaccgactcgtcctcct 58390
>gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, complete sequence Length = 170973 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 gaggatgagaggaacctggat 407 ||||||||||||||||||||| Sbjct: 91539 gaggatgagaggaacctggat 91519
>gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map 8p21-p11, complete sequence Length = 167794 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 gaggatgagaggaacctggat 407 ||||||||||||||||||||| Sbjct: 146103 gaggatgagaggaacctggat 146083
>ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA Length = 2983 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 173 cagccgcggcgccaccgacccgtcctcct 201 ||||| ||||||||||||| ||||||||| Sbjct: 1765 cagccacggcgccaccgactcgtcctcct 1737
>gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA Length = 2647 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 173 cagccgcggcgccaccgacccgtcctcct 201 ||||| ||||||||||||| ||||||||| Sbjct: 1429 cagccacggcgccaccgactcgtcctcct 1401
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 gaggaggaagacgacggggaa 299 ||||||||||||||||||||| Sbjct: 909354 gaggaggaagacgacggggaa 909334
>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence Length = 152529 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 gaggatgagaggaacctggat 407 ||||||||||||||||||||| Sbjct: 114816 gaggatgagaggaacctggat 114796
>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev Length = 416 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 164 caccaccaccagccgcggcgccacc 188 |||||||||||||| |||||||||| Sbjct: 305 caccaccaccagccacggcgccacc 281
>ref|NM_209563.1| Eremothecium gossypii ADR114Cp (ADR114C), mRNA Length = 2085 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gaggaggaagacgacggggaa 299 ||||||||||||||||||||| Sbjct: 154 gaggaggaagacgacggggaa 174
>gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 of 74 of the complete sequence Length = 303928 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 173 cagccgcggcgccaccgacccgtcctcct 201 ||||| ||||||||||||| ||||||||| Sbjct: 287799 cagccacggcgccaccgactcgtcctcct 287771
>gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, complete sequence Length = 128253 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 atggatgagcaggatcactat 359 ||||||||||||||||||||| Sbjct: 108319 atggatgagcaggatcactat 108339
>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306, complete sequence Length = 62713 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 17 ccttcccgccgaaaccctagcctca 41 |||||||| |||||||||||||||| Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 251631 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 atgactccatagaggatgag 395 |||||||||||||||||||| Sbjct: 52421 atgactccatagaggatgag 52440
>ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains similarity to gypsy-type retrotransposon (OSJNBa0012D19.23), mRNA Length = 1998 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gaggaggaagacgacgggga 298 |||||||||||||||||||| Sbjct: 868 gaggaggaagacgacgggga 887
>ref|NM_193891.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 960 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 636 cgacgaggaggaagacgacg 655
>ref|NM_189357.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1632 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgccaccgacccgtcctcct 201 |||||||||||||||||||| Sbjct: 843 cgccaccgacccgtcctcct 824
>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19, complete sequence Length = 153276 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gaggaggaagacgacgggga 298 |||||||||||||||||||| Sbjct: 121853 gaggaggaagacgacgggga 121872
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08, complete sequence Length = 115026 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 107836 cgacgaggaggaagacgacg 107817
>gb|AY641547.1| Halomonas maura nitrate-reductase operon, complete sequence Length = 8823 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cgaggacgacggcgccaccg 267 |||||||||||||||||||| Sbjct: 3486 cgaggacgacggcgccaccg 3505
>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12, complete sequence Length = 119909 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 22028 cgacgaggaggaagacgacg 22009
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 acaccaccaccagccgcggc 182 |||||||||||||||||||| Sbjct: 653840 acaccaccaccagccgcggc 653821
>ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM04809.1) partial mRNA Length = 1827 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 275 cgacgaggaggaagacgacggggaagac 302 |||||| ||||||||||||| ||||||| Sbjct: 864 cgacgacgaggaagacgacgaggaagac 891
>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence Length = 177226 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcctccacaggacccttct 77 |||||||||||||||||||| Sbjct: 72162 ctcctccacaggacccttct 72181
>ref|XM_380438.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00262.1) partial mRNA Length = 1035 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 402 cgacgaggaggaagacgacg 421
>ref|XM_858301.1| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein 2 (130 kDa retinoblastoma-associated protein) (PRB2) (P130) (RBR-2), transcript variant 3 (LOC478127), mRNA Length = 2389 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gaggaggaagacgacgggga 298 |||||||||||||||||||| Sbjct: 153 gaggaggaagacgacgggga 172
>ref|XM_535303.2| PREDICTED: Canis familiaris similar to Retinoblastoma-like protein 2 (130 kDa retinoblastoma-associated protein) (PRB2) (P130) (RBR-2), transcript variant 1 (LOC478127), mRNA Length = 4080 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gaggaggaagacgacgggga 298 |||||||||||||||||||| Sbjct: 153 gaggaggaagacgacgggga 172
>ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predicted mRNA Length = 1260 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 gaggaggaagacgacggggaagac 302 |||||||||||||||| ||||||| Sbjct: 1108 gaggaggaagacgacgaggaagac 1131
>ref|XM_785070.1| PREDICTED: Strongylocentrotus purpuratus similar to Hypothetical UPF0120 protein DKFZp564C186 homolog (LOC585237), mRNA Length = 2835 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 agacgacggggaagacctcttcaa 310 |||||||| ||||||||||||||| Sbjct: 2055 agacgacgaggaagacctcttcaa 2078
>emb|BX011524.1|CNS08H20 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA18BG03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 927 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 275 cgacgaggaggaagacgacggggaagac 302 ||||||||||| | |||||||||||||| Sbjct: 795 cgacgaggagggaaacgacggggaagac 768
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gaggaggaagacgacgggga 298 |||||||||||||||||||| Sbjct: 15063234 gaggaggaagacgacgggga 15063253
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 22276608 cgacgaggaggaagacgacg 22276589
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 26869596 cgacgaggaggaagacgacg 26869577
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccaccgacccgtcctcct 201 |||||||||||||||||||| Sbjct: 42357219 cgccaccgacccgtcctcct 42357238 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 15675773 cgacgaggaggaagacgacg 15675792
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccaccgacccgtcctcct 201 |||||||||||||||||||| Sbjct: 129176 cgccaccgacccgtcctcct 129195
>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483G10 Length = 190721 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgccaccgacccgtcctcct 201 |||||||||||||||||||| Sbjct: 16557 cgccaccgacccgtcctcct 16576
>ref|XM_222159.3| PREDICTED: Rattus norvegicus zinc finger, CCHC domain containing 8 (predicted) (Zcchc8_predicted), mRNA Length = 2675 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 162 cgacgaggaggaagacgacg 181
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 170 caccagccgcggcgccaccgacccgtcc 197 ||||||||||| |||||||||| ||||| Sbjct: 2859792 caccagccgcgccgccaccgacgcgtcc 2859819 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 caccaccaccagccgcggcg 183 |||||||||||||||||||| Sbjct: 1645167 caccaccaccagccgcggcg 1645186
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ccgcggatggacgactcgga 103 |||||||||||||||||||| Sbjct: 2043809 ccgcggatggacgactcgga 2043828
>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0566A10 Length = 174367 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 55031 cgacgaggaggaagacgacg 55012
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 113670 cgacgaggaggaagacgacg 113689
>dbj|AK105946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C05, full insert sequence Length = 1367 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgacgaggaggaagacgacg 294 |||||||||||||||||||| Sbjct: 978 cgacgaggaggaagacgacg 997
>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete sequence Length = 183975 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ctcctccacaggacccttct 77 |||||||||||||||||||| Sbjct: 181578 ctcctccacaggacccttct 181597
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gaggaggaagacgacgggga 298 |||||||||||||||||||| Sbjct: 15071475 gaggaggaagacgacgggga 15071494
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 gaggaggaagacgacggggaagac 302 |||||||||||||||| ||||||| Sbjct: 3903697 gaggaggaagacgacgaggaagac 3903674 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,532,522 Number of Sequences: 3902068 Number of extensions: 3532522 Number of successful extensions: 81113 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80229 Number of HSP's gapped (non-prelim): 883 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
