ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 8e-14
2gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome... 78 2e-11
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4ref|XM_475668.1| Oryza sativa (japonica cultivar-group), predic... 66 8e-08
5dbj|AK105718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
6ref|XM_425667.1| PREDICTED: Gallus gallus similar to P2Y purinoc... 42 1.1
7gb|AC161810.10| Mus musculus chromosome 3, clone RP24-363L5, com... 40 4.4
8emb|Z84475.1|HS162C6 Human DNA sequence from clone RP1-162C6 on ... 40 4.4
9emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chr... 40 4.4
10emb|X82596.1|RLAAPJQMP R.leguminosarum aapJ, Q, M, P genes and ORF5 40 4.4
11gb|AC068757.20| Homo sapiens 3 BAC RP11-49A13 (Roswell Park Canc... 40 4.4
12gb|AC104038.9| Homo sapiens chromosome 11, clone RP11-746C23, co... 40 4.4
13gb|AC107881.16| Homo sapiens chromosome 11, clone CTD-2007B22, c... 40 4.4
14dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 4.4
15gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, com... 40 4.4
16gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complet... 40 4.4
17gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, comple... 40 4.4
18emb|AL731840.17| Mouse DNA sequence from clone RP23-52C15 on chr... 40 4.4

>dbj|AK101520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046K22, full
            insert sequence
          Length = 2513

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                               
Query: 266  caccgaatagaggaaaaaatcagcgtaacaagggcataagcattatcagct 316
            |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1969 caccaaatagagggaaaaatcagcgtaacaagggcataagcattatcagct 2019



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                         
Query: 25   attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69
            |||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct: 1662 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 1706



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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                        
Query: 274   agaggaaaaaatcagcgtaacaagggcataagcattatcagct 316
             ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 52679 agagggaaaaatcagcgtaacaagggcataagcattatcagct 52721



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                          
Query: 25    attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69
             |||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct: 52285 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 52329



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                           
Query: 274      agaggaaaaaatcagcgtaacaagggcataagcattatcagct 316
                ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 24983826 agagggaaaaatcagcgtaacaagggcataagcattatcagct 24983868



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                             
Query: 25       attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69
                |||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct: 24983432 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 24983476



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>ref|XM_475668.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2205

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 25  attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69
           |||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct: 370 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 414



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>dbj|AK105718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F09, full
           insert sequence
          Length = 2478

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 25  attgatgacagtgatggcttaccatctaagcaggccgaagaagtg 69
           |||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct: 447 attgatgatagtgatggcttatcatcaaagcaggccgaagaagtg 491



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>ref|XM_425667.1| PREDICTED: Gallus gallus similar to P2Y purinoceptor 2 (P2Y2) (P2U
           purinoceptor 1) (P2U1) (ATP receptor) (Purinergic
           receptor) (LOC428108), mRNA
          Length = 1761

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 63  agaagtggcactgaaggttgg 83
           |||||||||||||||||||||
Sbjct: 226 agaagtggcactgaaggttgg 206



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>gb|AC161810.10| Mus musculus chromosome 3, clone RP24-363L5, complete sequence
          Length = 151433

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tggaaagagagtctcctcta 166
             ||||||||||||||||||||
Sbjct: 40720 tggaaagagagtctcctcta 40701



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>emb|Z84475.1|HS162C6 Human DNA sequence from clone RP1-162C6 on chromosome 6q21, complete
            sequence
          Length = 91017

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 221  ttcacagcaaaataaacaat 240
            ||||||||||||||||||||
Sbjct: 6068 ttcacagcaaaataaacaat 6087



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>emb|AL365215.23| Human DNA sequence from clone RP11-416D8 on chromosome 10 Contains the
             5' end of the RSU1 gene for Ras suppressor protein 1, the
             3' end of the CUBN gene for cubilin (intrinsic
             factor-cobalamin receptor) and a CpG island, complete
             sequence
          Length = 184703

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   gcttcagatgggccagacca 122
             ||||||||||||||||||||
Sbjct: 47119 gcttcagatgggccagacca 47138



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>emb|X82596.1|RLAAPJQMP R.leguminosarum aapJ, Q, M, P genes and ORF5
          Length = 5441

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   aagcaggccgaagaagtggc 71
            ||||||||||||||||||||
Sbjct: 4612 aagcaggccgaagaagtggc 4631



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>gb|AC068757.20| Homo sapiens 3 BAC RP11-49A13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158438

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ttcacagcaaaataaacaat 240
             ||||||||||||||||||||
Sbjct: 18586 ttcacagcaaaataaacaat 18605



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>gb|AC104038.9| Homo sapiens chromosome 11, clone RP11-746C23, complete sequence
          Length = 187648

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    tattcacagcaaaataaaca 238
              ||||||||||||||||||||
Sbjct: 148690 tattcacagcaaaataaaca 148671



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>gb|AC107881.16| Homo sapiens chromosome 11, clone CTD-2007B22, complete sequence
          Length = 147727

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   tattcacagcaaaataaaca 238
             ||||||||||||||||||||
Sbjct: 56984 tattcacagcaaaataaaca 56965



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>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
             sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   ttcacagcaaaataaacaat 240
             ||||||||||||||||||||
Sbjct: 30612 ttcacagcaaaataaacaat 30593



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>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence
          Length = 199088

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    tggaaagagagtctcctcta 166
              ||||||||||||||||||||
Sbjct: 176481 tggaaagagagtctcctcta 176462



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>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence
          Length = 217265

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    tggtattcacagcaaaataa 235
              ||||||||||||||||||||
Sbjct: 193832 tggtattcacagcaaaataa 193851



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>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence
          Length = 187362

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   tggtattcacagcaaaataa 235
             ||||||||||||||||||||
Sbjct: 25909 tggtattcacagcaaaataa 25890



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>emb|AL731840.17| Mouse DNA sequence from clone RP23-52C15 on chromosome 2, complete
             sequence
          Length = 61822

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 195   gactgattctaccgctgtgaatgg 218
             |||||| |||||||||||||||||
Sbjct: 49962 gactgagtctaccgctgtgaatgg 49985


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,999,220
Number of Sequences: 3902068
Number of extensions: 2999220
Number of successful extensions: 53156
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53096
Number of HSP's gapped (non-prelim): 60
length of query: 331
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 309
effective length of database: 17,147,199,772
effective search space: 5298484729548
effective search space used: 5298484729548
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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