ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl25g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLB1_CANAL (Q9UWF6) Lysophospholipase 1 precursor (EC 3.1.1.5) (... 31 0.61
2SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (... 31 0.80
3SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SAL... 31 0.80
4SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysi... 30 1.0
5SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysi... 29 3.0
6TRIM3_RAT (O70277) Tripartite motif protein 3 (RING finger prote... 28 4.0
7TRIM3_MOUSE (Q9R1R2) Tripartite motif protein 3 (RING finger pro... 28 4.0
8PLB2_CANAL (O93795) Lysophospholipase 2 precursor (EC 3.1.1.5) (... 28 5.2
9ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.1... 28 5.2
10PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (... 28 6.8
11FANK1_HUMAN (Q8TC84) Fibronectin type 3 and ankyrin repeat domai... 27 8.8

>PLB1_CANAL (Q9UWF6) Lysophospholipase 1 precursor (EC 3.1.1.5) (Phospholipase|
           B 1) (CaPLB1)
          Length = 605

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 198 AILRRKLGWEGEERTEPCRRCYPGRCF 118
           AI+RR+   +G E+TE C+RC+   C+
Sbjct: 534 AIIRREQERQGIEQTEQCKRCFENYCW 560



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>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)|
          Length = 1004

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 228 LCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCF 118
           +CL+V +CP+A LR   G  G ER   C+ C  GR F
Sbjct: 633 ICLRVLSCPRA-LRLHYGQHGGERPFKCKVC--GRAF 666



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>SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SALL2) (HSal2)|
          Length = 1007

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 228 LCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCF 118
           +CL+V +CP+A LR   G  G ER   C+ C  GR F
Sbjct: 635 ICLRVLSCPRA-LRLHYGQHGGERPFKCKVC--GRAF 668



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>SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1)
           (H3-K9-HMTase 1) (Suppressor of variegation 3-9 homolog
           protein 1) (Su(var)3-9 homolog protein 1) (Protein SET
           DOMAIN GR
          Length = 670

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 323 DYAAVLDAKPLRTLTPMFPA 382
           D   VLD KPLRTL P+FP+
Sbjct: 10  DKTRVLDIKPLRTLRPVFPS 29



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>SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3)
           (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog
           protein 3) (Su(var)3-9 homolog protein 3) (Protein SET
           DOMAIN GR
          Length = 669

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 323 DYAAVLDAKPLRTLTPMFP 379
           D + VLD KPLR+L P+FP
Sbjct: 17  DKSIVLDIKPLRSLKPVFP 35



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>TRIM3_RAT (O70277) Tripartite motif protein 3 (RING finger protein 22)|
           (Brain-expressed RING finger protein)
          Length = 744

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 231 SLCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCFRRPLPPSSKGIAPP 76
           S+CL  Y CP+ +              PC   +  RC +  +PP S  ++ P
Sbjct: 23  SICLDRYRCPKVL--------------PCLHTFCERCLQNYIPPQSLTLSCP 60



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>TRIM3_MOUSE (Q9R1R2) Tripartite motif protein 3 (RING finger protein 22) (RING|
           finger protein HAC1)
          Length = 744

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -3

Query: 231 SLCLQVYTCPQAILRRKLGWEGEERTEPCRRCYPGRCFRRPLPPSSKGIAPP 76
           S+CL  Y CP+ +              PC   +  RC +  +PP S  ++ P
Sbjct: 23  SICLDRYRCPKVL--------------PCLHTFCERCLQNYIPPQSLTLSCP 60



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>PLB2_CANAL (O93795) Lysophospholipase 2 precursor (EC 3.1.1.5) (Phospholipase|
           B 2) (CaPLB2)
          Length = 608

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 198 AILRRKLGWEGEERTEPCRRCYPGRCF 118
           AI+RR+    G E+TE C++C+   C+
Sbjct: 533 AIIRREQERLGIEQTEQCKKCFENYCW 559



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>ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.11.1) (Ataxia|
           telangiectasia and Rad3-related protein) (Xatr)
          Length = 2654

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 338 LDAKPLRTLTPMFPAPLGMHT 400
           L AKPLR  TP  PAP+ M T
Sbjct: 446 LTAKPLRRNTPSVPAPVDMKT 466



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>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase|
           B 3)
          Length = 754

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 198 AILRRKLGWEGEERTEPCRRCYPGRCF 118
           AI+RR+    GEE+++ C++C+   C+
Sbjct: 639 AIIRRQQERLGEEQSDECKKCFQEYCW 665



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>FANK1_HUMAN (Q8TC84) Fibronectin type 3 and ankyrin repeat domains protein 1|
          Length = 345

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 287 MAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAPLGMH 397
           ++GNQ+ AS+++D  A ++ K     TP+  A L  H
Sbjct: 254 VSGNQRVASLLIDAGANVNVKDRNGKTPLMVAVLNNH 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,453,600
Number of Sequences: 219361
Number of extensions: 822038
Number of successful extensions: 2141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2139
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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