ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl27a06 |
|---|---|
| Clone Library Name | barley_pub |
>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex| component Sec8) Length = 1053 Score = 177 bits (449), Expect = 9e-45 Identities = 85/115 (73%), Positives = 100/115 (86%) Frame = +3 Query: 84 GIFDGLPIPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLI 263 GIF+GLP+P DK+YL+E L+RIDE WAAARFDSLPHVVHILTSKDR+ +I LKEQSD++ Sbjct: 2 GIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDVV 61 Query: 264 EDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEMAEAKKLLGRKNQ 428 E+VVDEVVHAYH GFNKAIQNYS ILRLFSES E I LK ++AEAK+ LG +N+ Sbjct: 62 EEVVDEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNK 116
>SEC8_NEUCR (Q9HE88) Probable exocyst complex component sec8| Length = 1111 Score = 35.4 bits (80), Expect = 0.058 Identities = 18/73 (24%), Positives = 34/73 (46%) Frame = +3 Query: 207 TSKDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKG 386 +S R E + ++ +++ + +VH +H GFN +I + I S + + LK Sbjct: 115 SSVGRAHEYRNFQQTHQFLQESLKNIVHDHHQGFNSSIGTFHKIQGSIQSSQKKVRALKE 174 Query: 387 EMAEAKKLLGRKN 425 +A +K L N Sbjct: 175 SLAASKTALCTTN 187
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 33.5 bits (75), Expect = 0.22 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +2 Query: 5 YSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 169 YS S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 891 YSCCSAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 33.5 bits (75), Expect = 0.22 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +2 Query: 5 YSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 169 YS S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 891 YSCCSAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>OST3A_HUMAN (Q9Y663) Heparan sulfate glucosamine 3-O-sulfotransferase 3A1 (EC| 2.8.2.30) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1) (Heparan sulfate 3-O-sulfotransferase 3A1) (h3-OST-3A) Length = 406 Score = 32.3 bits (72), Expect = 0.49 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +2 Query: 305 LQQGHTELLPYPAAVQRVRR------EHHRPQGGDGRGQKAAWEEES 427 L G EL +PAA QR R RP G++AAWEEES Sbjct: 71 LAGGPRELAVWPAAAQRKRLLQLPQWRRRRPPAPRDDGEEAAWEEES 117
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 32.0 bits (71), Expect = 0.64 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +2 Query: 11 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 127 P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 1997 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2035
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 32.0 bits (71), Expect = 0.64 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +2 Query: 11 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 127 P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 2000 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2038
>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)| Length = 489 Score = 31.2 bits (69), Expect = 1.1 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 12/90 (13%) Frame = +3 Query: 30 RLSPGPASPSVTMNRHRRGIFDGLP-------IPPD---KSYLKEGLSRIDEGWAAARFD 179 ++SP P PS++M R I+ LP + P KS +S++ + F Sbjct: 83 KVSPRPTPPSLSMRRSEASIYT-LPTSLKNRTVSPSVYTKSSTVSSISKLSSSSPLSSFS 141 Query: 180 SLPHV--VHILTSKDRDGEIQFLKEQSDLI 263 PH+ VH L+ K +D +++ ++ +S I Sbjct: 142 EKPHLNRVHSLSVKTKDLKLKGIRGRSQTI 171
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 11 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 127 P +P AP P S L VG PP +R PP A ++LP Sbjct: 2001 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2039
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 11 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 127 P +P AP P S L VG PP +R PP A ++LP Sbjct: 1998 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2036
>SYFA_HALSA (Q9HMK4) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 502 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 341 AAVQRVRREHHRPQGGDGRGQKAAWEEE 424 A V+RV R H G DG G + W+E+ Sbjct: 300 ALVERVERAHREGAGDDGDGYHSPWDED 327
>FA84A_BOVIN (Q3ZCA1) Protein FAM84A| Length = 297 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +3 Query: 96 GLPIPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLIED 269 G P + YLK L+ D ARF SL ++ D G ++ L+E +DL++D Sbjct: 240 GTQPPQQQYYLKVHLA--DNKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD 295
>VGLC_BHV1C (P14378) Glycoprotein GIII precursor| Length = 521 Score = 30.0 bits (66), Expect = 2.4 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Frame = +2 Query: 8 SPVSPDLAP---LPGSRLAVGNDEPP-------PAWHLRRPPNSARQILPEGRAVADRRG 157 +P SPD P PG+ VG EPP P + PP P G A R G Sbjct: 57 TPNSPDATPEDSTPGATTPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNASRDG 116 Query: 158 MGSG 169 SG Sbjct: 117 RPSG 120
>YAYB_SCHPO (Q10218) Hypothetical protein C4H3.11c in chromosome I| Length = 783 Score = 29.3 bits (64), Expect = 4.1 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = +3 Query: 129 KEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGE-IQFLKEQSDLIEDVVDEVVHAYHHG 305 K G S +D+G AA+R+D+ + K+R E ++ L+EQ + I+ V V+ Sbjct: 349 KLGESNVDDGMAASRYDT------VKREKERLSEHLKSLQEQYEHIQSVYKNVL------ 396 Query: 306 FNKAIQNYSHILRLFSESAESITGLKGEMAEAKKLLGRKNQ 428 + S+I+RL ++ +E+ E+ ++L K Q Sbjct: 397 ----LDRESYIMRLGNKISEN-----NELLNENRVLKEKLQ 428
>REB1_KLULA (Q05950) DNA-binding protein REB1 (QBP)| Length = 595 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +3 Query: 117 KSYLKEGLSRIDEGWAAARFDSLPHVVHIL----TSKDRDGEIQFLKEQSDLIEDVVD 278 ++Y+K G +R W+ + L +V+H + ++ DGE +K+ S IED D Sbjct: 379 RNYVKCGPNRAANKWSVEEEEKLKNVIHQMLDNASTAYEDGEDDEMKDSSTKIEDSGD 436
>EXOC4_RAT (Q62824) Exocyst complex component 4 (Exocyst complex component| Sec8) (rSec8) Length = 975 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = +3 Query: 213 KDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEM 392 +DR+ E L+E + + +DE++ ++ AI+ Y I + S I +K + Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97 Query: 393 AEAKKLL 413 K LL Sbjct: 98 LSCKMLL 104
>EXOC4_MOUSE (O35382) Exocyst complex component 4 (Exocyst complex component| Sec8) Length = 975 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = +3 Query: 213 KDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEM 392 +DR+ E L+E + + +DE++ ++ AI+ Y I + S I +K + Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97 Query: 393 AEAKKLL 413 K LL Sbjct: 98 LSCKMLL 104
>EXOC4_HUMAN (Q96A65) Exocyst complex component 4 (Exocyst complex component| Sec8) Length = 974 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = +3 Query: 213 KDRDGEIQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSHILRLFSESAESITGLKGEM 392 +DR+ E L+E + + +DE++ ++ AI+ Y I + S I +K + Sbjct: 38 EDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENL 97 Query: 393 AEAKKLL 413 K LL Sbjct: 98 LSCKMLL 104
>GCSH_PEA (P16048) Glycine cleavage system H protein, mitochondrial precursor| Length = 165 Score = 28.5 bits (62), Expect = 7.1 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Frame = +3 Query: 9 AQSLQISRLSPGPASPSVTMNRHRRGIFDGLPIPPDKSYLKEGLSRIDEGWAAARFDSLP 188 A +L++S S SP+ +++R + DGL P ++K S G D L Sbjct: 11 ANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLG 70 Query: 189 HVVHI--------LTSKDRDGEIQFLKEQSDLIEDVVDEVV 287 VV + +T G ++ +K SD+ + EV+ Sbjct: 71 EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVI 111
>DNAK1_SYNPX (Q7U6R7) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 662 Score = 28.5 bits (62), Expect = 7.1 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -1 Query: 155 LVDPRQPFLQV-RFVWRNWEAVEDATPVAVHRYRRRGGTRGEAR 27 ++ PR F + RFV R+WE +ED++ +AV Y R RG+ R Sbjct: 59 VLSPRNTFSNLKRFVGRDWEELEDSS-LAV-PYTVRANDRGQVR 100
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = -3 Query: 156 PRRSATALPSGKICLAELGGRRRCHAGGG-----SSLPTARRDPGRGAR 25 PRRS P+G + E GG R C G G + P++ D G A+ Sbjct: 2518 PRRSPGP-PAGGVSCPEKGGNRACPGGSGPKTSAAETPSSASDTGEAAQ 2565
>CD123_YEAST (Q05791) Cell division cycle protein 123| Length = 360 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +3 Query: 198 HILTSKDRD-GEIQFLKEQSDLIEDVVDEVVH 290 HI+ + RD +L E SD +D++DE+VH Sbjct: 206 HIVGATQRDLNYYDYLDELSDTFKDLIDEIVH 237
>FA84A_HUMAN (Q96KN4) Protein FAM84A (Protein NSE1)| Length = 292 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +3 Query: 96 GLPIPPDKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLIED 269 G P + YLK L + ARF SL ++ D G ++ L+E +DL++D Sbjct: 235 GTQPPQQQYYLKVHLG--ENKVHTARFHSLEDLIREKRRIDASGRLRVLQELADLVDD 290
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)| Length = 1220 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -2 Query: 196 TTCGSESNRAAAHPSSIRDSPSFR*DLSGGIGRPSKMPRRWRFIVTDGEAGPG 38 TT S N A S +P + G +GRP + P+ W + + GPG Sbjct: 813 TTTSSYDN--AIFNSQFNKAPGSDDEEGGNLGRPIENPKTWVISIEVEDTGPG 863
>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (OX-34 antigen) Length = 344 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/52 (28%), Positives = 21/52 (40%) Frame = +2 Query: 2 SYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVADRRG 157 S +PV+ P PG L P P H R ++ P G V ++G Sbjct: 268 SQNPVASQAPPPPGHHLQTPGHRPLPPSHRNREHQPKKRPPPSGTQVHQQKG 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,549,739 Number of Sequences: 219361 Number of extensions: 1268552 Number of successful extensions: 5061 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4856 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5055 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
