ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27b10 |
|---|---|
| Clone Library Name | barley_pub |
>APX8_ORYSA (Q69SV0) Probable L-ascorbate peroxidase 8, chloroplast precursor| (EC 1.11.1.11) Length = 478 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -2 Query: 198 ALSAAGGAEVPYRREEVGIWAAEGPAARRSPPSGELPASGGR 73 A+ AGG ++P + V + AAE + PP G LP +G R Sbjct: 183 AIEEAGGPKIPMKYGRVDVTAAE-----QCPPEGRLPDAGPR 219
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit| 4) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 30.8 bits (68), Expect = 2.0 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 9/64 (14%) Frame = -2 Query: 240 ELGDGD---------VSDFDFWIALSAAGGAEVPYRREEVGIWAAEGPAARRSPPSGELP 88 + G+GD V D D W+ A P+R G W GPAA SPP G Sbjct: 551 QAGEGDRALLSPQYMVPDMDLWVP--ARQSTSQPWRGG-AGAWLG-GPAASLSPPKGSSA 606 Query: 87 ASGG 76 + GG Sbjct: 607 SQGG 610
>ADCY5_CANFA (P30803) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) (Ca(2+)-inhibitable adenylyl cyclase) Length = 1265 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 192 SAAGGAEVPYRREEVGIWAAEGPAARRSPPSGELPASGG-RGVR 64 +AAGGAEV R E+G+ G P E A GG RG R Sbjct: 157 AAAGGAEVRPRSVELGLDERRGRGRAEPEPEAEAGAPGGDRGAR 200
>PRR3_MOUSE (Q811B5) Proline-rich protein 3 (MHC class I region proline-rich| protein CAT56) Length = 190 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 7/53 (13%) Frame = -3 Query: 407 KEGSSQSLCCGGEPAGGGNIAPPLAEATA-------IDGGGGANRSPRRRAWW 270 K G +S G P G + PPL I GG G SP R WW Sbjct: 52 KPGDPKSAFHRGPPGSRGRMIPPLLSLPPPPRGRGYIRGGLGPRSSPYGRGWW 104
>PRR3_RAT (Q6MG07) Proline-rich protein 3 (MHC class I region proline-rich| protein CAT56) Length = 186 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 7/53 (13%) Frame = -3 Query: 407 KEGSSQSLCCGGEPAGGGNIAPPLAEATA-------IDGGGGANRSPRRRAWW 270 K G +S+ G P G + PPL I GG G SP R WW Sbjct: 48 KPGDPKSVFHRGPPGSRGPMIPPLLSLPPPPRGRGHIRGGLGPRSSPYGRGWW 100
>TOIP1_MOUSE (Q921T2) Torsin-1A-interacting protein 1 (Lamina-associated| polypeptide 1B) Length = 520 Score = 29.3 bits (64), Expect = 5.7 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 12/84 (14%) Frame = -2 Query: 273 VEPDGRVRHGDELGD---GDVSDFDFWIAL-SAAGGAEVPYRREEVGIWA--------AE 130 V P +R G D GD SD + A S G EV + E ++ Sbjct: 19 VTPRAPIREGRRRLDPRNGDSSDAPAYGAHPSRRGRREVRFSEEPAEVYGDFEPRAAKER 78 Query: 129 GPAARRSPPSGELPASGGRGVRRS 58 P RR+PP PAS G VR S Sbjct: 79 SPGGRRTPPEKFRPASAGEEVRES 102
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -2 Query: 123 AARRSPPSGELPASGGRGVR---RSLGEEEITGD*AEEVARE 7 A R+P S E A+GGRG R R L EE+ + + E + E Sbjct: 897 ADARAPASSERSAAGGRGPRGHKRKLNEEDAASESSRESSNE 938
>UBX_MUSDO (Q25451) Homeotic protein ultrabithorax (Fragment)| Length = 248 Score = 24.6 bits (52), Expect(2) = 6.1 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = -2 Query: 195 LSAAGGAEVPYRREEVGIWAAEGPAARRSPPSGELPASGGRG 70 L +GG+ V +R G+ G +S S + +GG G Sbjct: 169 LDTSGGSPVSHRGGSAGVVGGAGTGVGQSGQSANVGGAGGVG 210 Score = 23.1 bits (48), Expect(2) = 6.1 Identities = 12/26 (46%), Positives = 12/26 (46%) Frame = -3 Query: 377 GGEPAGGGNIAPPLAEATAIDGGGGA 300 GG AG N A A GGGGA Sbjct: 121 GGGSAGSANGANNTANGQNTSGGGGA 146
>OSB10_HUMAN (Q9BXB5) Oxysterol-binding protein-related protein 10 (OSBP-related| protein 10) (ORP-10) Length = 764 Score = 28.9 bits (63), Expect = 7.5 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = -3 Query: 473 SAPSSVSCERSGTWASRLLHRKKEGSSQSLCCGGEPAGGGNIAPPLAEATAIDGGGGANR 294 SA SS SC +G S S+S G GGG+ + P + A + GGGG R Sbjct: 26 SAGSSPSCSLAGRGVS----------SRSAAAG--LGGGGSRSSPGSVAASPSGGGGRRR 73 Query: 293 SP 288 P Sbjct: 74 EP 75
>RFBD2_ECOLI (Q46769) dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)| (dTDP-4-keto-L-rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose synthetase) Length = 301 Score = 28.9 bits (63), Expect = 7.5 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 6/96 (6%) Frame = -2 Query: 300 EQIAETEGLVEPDGRVR---HGDELGDGDVSDFDFWIALSAAGGAEVPYRREEVGIWAAE 130 E +AET + PD V H D D S+ +F L+A + EVG W Sbjct: 44 EGVAETVKKIRPDVIVNAAAHTDV--DKAESEPEFAQLLNATSVEAIAKAANEVGAWVIH 101 Query: 129 GPAARRSPPSGELPASGGRGVRRSL---GEEEITGD 31 P +GE+P GG L GE +++ + Sbjct: 102 YSTDYVFPGTGEIPWQGGTDATAPLNVYGETKLSSE 137
>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6| Length = 704 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = -3 Query: 374 GEP--AGGGNIAPPLAEATAIDGGGGANRSPRRRAW 273 GEP +G G+++P AEA + G A RSP AW Sbjct: 294 GEPQQSGDGSLSPQ-AEAIEVAAGESAGRSPGELAW 328
>Y496_MYCBO (P64708) Hypothetical glycosyl transferase Mb0496 (EC 2.-.-.-)| Length = 480 Score = 28.5 bits (62), Expect = 9.7 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Frame = -2 Query: 279 GLVEPDGRVRHGDELGDG-------DVSDFDFWIALSAAGGAEVPYRREEVGIWAAEGPA 121 GL PDG VR DELG S D AA VP E G+ A E A Sbjct: 305 GLASPDGLVRLADELGISARVTFLPPQSHTDLATLFRAADLVAVPSYSESFGLVAVEAQA 364 Query: 120 ARR---SPPSGELPASGGRGVRRSLGEEEITGD*AEEV 16 + G LP + G+ +L G A+ + Sbjct: 365 CGTPVVAAAVGGLPVAVRDGITGTLVSGHEVGQWADAI 402
>Y486_MYCTU (P64707) Hypothetical glycosyl transferase Rv0486/MT0504 (EC| 2.-.-.-) Length = 480 Score = 28.5 bits (62), Expect = 9.7 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Frame = -2 Query: 279 GLVEPDGRVRHGDELGDG-------DVSDFDFWIALSAAGGAEVPYRREEVGIWAAEGPA 121 GL PDG VR DELG S D AA VP E G+ A E A Sbjct: 305 GLASPDGLVRLADELGISARVTFLPPQSHTDLATLFRAADLVAVPSYSESFGLVAVEAQA 364 Query: 120 ARR---SPPSGELPASGGRGVRRSLGEEEITGD*AEEV 16 + G LP + G+ +L G A+ + Sbjct: 365 CGTPVVAAAVGGLPVAVRDGITGTLVSGHEVGQWADAI 402
>TSSC4_HUMAN (Q9Y5U2) Protein TSSC4 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 4 protein) (Tumor-suppressing STF cDNA 4 protein) Length = 329 Score = 28.5 bits (62), Expect = 9.7 Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Frame = -2 Query: 279 GLVEPDGRVRHG---DELGDGDVSDFDFWIALSAAGGAEVPYRREEVGIWAAE--GPAAR 115 G P HG D L VS D LS GGAEV +G+ E GP Sbjct: 7 GEPSPSVEGEHGTEYDTLPSDTVSLSDSDSDLSLPGGAEVE-ALSPMGLPGEEDSGPDEP 65 Query: 114 RSPPSGELPAS 82 SPPSG LPA+ Sbjct: 66 PSPPSGLLPAT 76
>DACH1_HUMAN (Q9UI36) Dachshund homolog 1 (Dach1)| Length = 758 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = -3 Query: 401 GSSQSLCCGGEPAGGGNIAPPLAEATAIDGGGGANRS 291 GSS + GG GG N P LA A+ GGGG S Sbjct: 87 GSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGIS 123
>VATA_CHLCV (Q822J8) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type| ATPase subunit A) Length = 591 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -3 Query: 479 YLSAPSSVSCERSGTWASRLLHRKKEGSSQSLC-CGGEPAGGGNIAPPLAEAT 324 YL++ + ER G R K+GS SL CG GGN P+ +AT Sbjct: 367 YLASRIAAFYERGGAV------RMKDGSEGSLTICGAVSPAGGNFEEPVTQAT 413 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,157,600 Number of Sequences: 219361 Number of extensions: 946360 Number of successful extensions: 4300 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4281 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
