ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protei... 31 1.7
2MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosi... 30 2.9
3YEAD_ECOLI (P39173) UPF0010 protein yeaD (Unknown protein from 2... 29 6.6

>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 88  HRPPPWSQTTETPPAPRQAEQGRTPTAQCXXXXXXXXXXXXSQRPLRRSISLTPQPEPFL 267
           H P P ++T   P  P  AEQ   P A+              + P   + +  P PEP  
Sbjct: 68  HAPAPAAETPPAPEHPPDAEQPAAPAAEHAPTPTHEAAPAHEEGPPPAAPAEAPAPEPEP 127

Query: 268 AHPATE 285
             P  E
Sbjct: 128 EKPKEE 133



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>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 82  LRHRPPPWSQTTETPPAPR 138
           LR  PPPW+     PPAP+
Sbjct: 697 LRRHPPPWAAPAHVPPAPQ 715



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>YEAD_ECOLI (P39173) UPF0010 protein yeaD (Unknown protein from 2D-page spots|
           T26/PR37)
          Length = 294

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 148 ALPASVPVAFPWFGSTAEGGVAA 80
           A+   VPV +PWFG  A+ G+ A
Sbjct: 72  AIRGGVPVCWPWFGPAAQQGLPA 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,969,871
Number of Sequences: 219361
Number of extensions: 829605
Number of successful extensions: 3889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3875
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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