ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 206 bits (104), Expect = 5e-50 Identities = 170/191 (89%), Gaps = 1/191 (0%) Strand = Plus / Plus Query: 285 gccatggcagggaggcccacggagatcgacgaggacctccacagccgccagctcgccgta 344 ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| Sbjct: 285 gccatggcagggagggggaacgagatcgacgaggacctgcacagccgccagctcgccgtc 344 Query: 345 tacggccgcgagacaatgaagcgtctcttcgcctccaacgtcctcgtatccggactccag 404 || || |||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 345 tatgggcgcgagaccatgaagcgcctcttcggctccaacgtcctcgtctctggactccag 404 Query: 405 ggcctcggcgccgaaatcgcanagaaccttgtccttgctggtgtcaagtctgtaa-cttg 463 || ||||| || || |||||| |||||||||||||||| |||||||||||||||| |||| Sbjct: 405 ggtctcggtgctgagatcgcaaagaaccttgtccttgcgggtgtcaagtctgtaaccttg 464 Query: 464 catgatgatgg 474 ||||||||||| Sbjct: 465 catgatgatgg 475 Score = 107 bits (54), Expect = 3e-20 Identities = 133/160 (83%), Gaps = 12/160 (7%) Strand = Plus / Plus Query: 103 cgctggatctggcgcggcagctcccgccggccgcctactactactgcctgcttttcgcgg 162 ||||||||||| |||||||||||||| ||||||| ||||||| ||||||| ||||| | Sbjct: 82 cgctggatctgacgcggcagctcccggcggccgcgtactact---gcctgctcttcgctg 138 Query: 163 cggcgg---------tcgggctcatcggcggcgtcgcgcactatatgctccctccgaagc 213 || ||| |||||||| ||||||||||||||| ||||||||| || | ||||| Sbjct: 139 cgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagc 198 Query: 214 gggagatcgtcgccagcgaggtcgagaaccagcagaagaa 253 |||||||||||||| ||||||||||| || ||||||||| Sbjct: 199 gggagatcgtcgccggcgaggtcgaggacttgcagaagaa 238
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 204 bits (103), Expect = 2e-49 Identities = 154/170 (90%), Gaps = 1/170 (0%) Strand = Plus / Plus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 401 gagatcgacgaggacctgcacagccgccagctcgccgtctatggccgcgagaccatgaag 460 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgca 425 | ||||||| ||||||||||||||| || ||||||||||| ||||| || || |||||| Sbjct: 461 ccgctcttcggctccaacgtcctcgtctctggactccagggtctcggtgctgagatcgca 520 Query: 426 nagaaccttgtccttgctggtgtcaagtctgtaa-cttgcatgatgatgg 474 |||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 521 aagaaccttgtccttgcgggtgtcaagtctgtaaccttgcatgatgatgg 570 Score = 81.8 bits (41), Expect = 2e-12 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 169 tcgggctcatcggcggcgtcgcgcactatatgctccctccgaagcgggagatcgtcgcca 228 |||||||| |||||| |||||||| ||||||||| || | ||||||||||||||||||| Sbjct: 250 tcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 308 Query: 229 gcgaggtcgagaaccagcagaagaa 253 ||||||||||| || ||||||||| Sbjct: 309 gcgaggtcgaggacttgcagaagaa 333
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 186 bits (94), Expect = 4e-44 Identities = 151/169 (89%), Gaps = 1/169 (0%) Strand = Plus / Plus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 438 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 497 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgca 425 || ||||||||||||||||||||||| || || ||| | |||||||||||||| ||||| Sbjct: 498 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcgcc 557 Query: 426 nagaaccttgtccttgctggtgtcaagtctgtaa-cttgcatgatgatg 473 |||||||||||||||| ||||||||||| |||| |||||| ||||||| Sbjct: 558 aagaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatg 606 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 225 ctggatctgacgcggcagctctcgccggctgcct 258
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Minus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 300112 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 300055 Score = 56.0 bits (28), Expect = 1e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 427 agaaccttgtccttgctggtgtcaagtctgt-aacttgcatgatgatg 473 |||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 299349 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatg 299302 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Minus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 300112 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 300055 Score = 56.0 bits (28), Expect = 1e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 427 agaaccttgtccttgctggtgtcaagtctgt-aacttgcatgatgatg 473 |||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 299349 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatg 299302 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 4821 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 4880 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 4881 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 4938 Score = 56.0 bits (28), Expect = 1e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Plus Query: 427 agaaccttgtccttgctggtgtcaagtctgt-aacttgcatgatgatg 473 |||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 5644 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatg 5691 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 4611 ctggatctgacgcggcagctctcgccggctgcct 4644
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Minus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 7490 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 7431 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 7430 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 7373 Score = 56.0 bits (28), Expect = 1e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 427 agaaccttgtccttgctggtgtcaagtctgt-aacttgcatgatgatg 473 |||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 6667 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatg 6620 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 7700 ctggatctgacgcggcagctctcgccggctgcct 7667
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 317077 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 317020 Score = 56.0 bits (28), Expect = 1e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 427 agaaccttgtccttgctggtgtcaagtctgtaa-cttgcatgatgatg 473 |||||||||||||||| ||||||||||| |||| |||||| ||||||| Sbjct: 316314 agaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatg 316267 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 317077 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 317020 Score = 56.0 bits (28), Expect = 1e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 427 agaaccttgtccttgctggtgtcaagtctgtaa-cttgcatgatgatg 473 |||||||||||||||| ||||||||||| |||| |||||| ||||||| Sbjct: 316314 agaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatg 316267 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 306 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 365 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 50188 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 50129 Query: 366 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 50128 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 50071 Score = 56.0 bits (28), Expect = 1e-04 Identities = 44/48 (91%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 427 agaaccttgtccttgctggtgtcaagtctgtaa-cttgcatgatgatg 473 |||||||||||||||| ||||||||||| |||| |||||| ||||||| Sbjct: 49365 agaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatg 49318 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 105 ctggatctggcgcggcagctcccgccggccgcct 138 ||||||||| ||||||||||| ||||||| |||| Sbjct: 50401 ctggatctgacgcggcagctctcgccggctgcct 50368
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 123 bits (62), Expect = 6e-25 Identities = 130/153 (84%) Strand = Plus / Plus Query: 305 ggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaa 364 ||||||||||||||||||||||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 317 ggagatcgacgaggacctccacagcaggcagctcgccgtgtacgggagggagaccatgcg 376 Query: 365 gcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgc 424 || |||||||||||| |||||||||| ||||| ||| | || || ||||||||||| || Sbjct: 377 ccgcctcttcgcctccgacgtcctcgtctccgggctcaacgggcttggcgccgaaattgc 436 Query: 425 anagaaccttgtccttgctggtgtcaagtctgt 457 | |||| |||| ||||||||| ||||||||||| Sbjct: 437 aaagaatcttgcccttgctggagtcaagtctgt 469
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 10276949 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 10276890 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggact 400 ||| |||||||| |||||||||||||| |||||||| Sbjct: 10276889 ggcggctcttcgcgtccaacgtcctcgtctccggact 10276853
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 138362 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 138303 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggact 400 ||| |||||||| |||||||||||||| |||||||| Sbjct: 138302 ggcggctcttcgcgtccaacgtcctcgtctccggact 138266
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 10275050 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 10274991 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggact 400 ||| |||||||| |||||||||||||| |||||||| Sbjct: 10274990 ggcggctcttcgcgtccaacgtcctcgtctccggact 10274954
>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence Length = 3682 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 368 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 427 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggact 400 ||| |||||||| |||||||||||||| |||||||| Sbjct: 428 ggcggctcttcgcgtccaacgtcctcgtctccggact 464
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 71.9 bits (36), Expect = 2e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 388 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || |||||||||||| | |||||||| || || ||| | |||||||| || || || | Sbjct: 389 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcggtgcagagattg 448 Query: 424 canagaaccttgtccttgctggtgtcaagtc 454 | ||||||||| |||||||| |||||||| Sbjct: 449 ccaagaaccttgctcttgctggggtcaagtc 479
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence Length = 3522 Score = 71.9 bits (36), Expect = 2e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 388 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 423 || |||||||||||| | |||||||| || || ||| | |||||||| || || || | Sbjct: 389 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcggtgcagagattg 448 Query: 424 canagaaccttgtccttgctggtgtcaagtc 454 | ||||||||| |||||||| |||||||| Sbjct: 449 ccaagaaccttgctcttgctggggtcaagtc 479
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 29425631 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 29425690 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 412 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 29425691 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 29425739
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 304 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 363 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 88553 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 88612 Query: 364 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 412 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 88613 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 88661
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 324 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 382 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 355 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 413
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 150 ctgcttttcgcggcggcggtcgg 172 ||||||||||||||||||||||| Sbjct: 272756 ctgcttttcgcggcggcggtcgg 272778
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 324 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 382 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 48502 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 48560
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 324 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 382 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 316 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 374
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 324 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 382 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 232 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 290
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 324 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 382 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 329 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 387
>gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB), and PopD (popD) genes, complete cds Length = 4231 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gcgaggtcgagaaccagcagaagaaa 254 |||| ||||||||||||||||||||| Sbjct: 2515 gcgaagtcgagaaccagcagaagaaa 2540
>gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 of the complete genome Length = 10052 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gcgaggtcgagaaccagcagaagaaa 254 |||| ||||||||||||||||||||| Sbjct: 6919 gcgaagtcgagaaccagcagaagaaa 6944
>gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD genes, complete cds; and ExsC gene, partial cds Length = 2688 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gcgaggtcgagaaccagcagaagaaa 254 |||| ||||||||||||||||||||| Sbjct: 452 gcgaagtcgagaaccagcagaagaaa 477
>gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB) and PopD (popD) genes, complete cds Length = 4168 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 229 gcgaggtcgagaaccagcagaagaaa 254 |||| ||||||||||||||||||||| Sbjct: 2361 gcgaagtcgagaaccagcagaagaaa 2386
>gb|DQ346667.1| Rhodococcus sp. DK17 vanillate monooxygenase oxygenase subunit (vanA) and vanillate monooxygenase reductase subunit (vanB) genes, complete cds Length = 2290 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 ccacggagatcgacgaggacc 321 ||||||||||||||||||||| Sbjct: 561 ccacggagatcgacgaggacc 581
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 ggagatcgtcgccagcgaggt 235 ||||||||||||||||||||| Sbjct: 5095484 ggagatcgtcgccagcgaggt 5095464
>ref|NM_190755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gcggcagctcccgccggccg 135 |||||||||||||||||||| Sbjct: 141 gcggcagctcccgccggccg 160
>gb|AC158918.7| Mus musculus chromosome 15, clone RP23-106N12, complete sequence Length = 209747 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 attctctcatcttcctcata 51 |||||||||||||||||||| Sbjct: 89730 attctctcatcttcctcata 89711
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gggcctcggcgccgaaatcg 423 |||||||||||||||||||| Sbjct: 3154771 gggcctcggcgccgaaatcg 3154752
>ref|XM_323722.1| Neurospora crassa OR74A hypothetical protein (NCU04370.1) partial mRNA Length = 3117 Score = 40.1 bits (20), Expect = 6.4 Identities = 61/75 (81%) Strand = Plus / Plus Query: 378 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 437 |||||||||||| | ||| ||| |||||||||||| ||| ||||| ||||| | | | Sbjct: 160 tccaacgtcctcatcgtcggcctcaagggcctcggcgtcgagatcgccaagaacgtggcc 219 Query: 438 cttgctggtgtcaag 452 |||||||| |||||| Sbjct: 220 cttgctggcgtcaag 234
>ref|XM_951050.1| Neurospora crassa OR74A hypothetical protein (NCU04370.1) partial mRNA Length = 3117 Score = 40.1 bits (20), Expect = 6.4 Identities = 61/75 (81%) Strand = Plus / Plus Query: 378 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 437 |||||||||||| | ||| ||| |||||||||||| ||| ||||| ||||| | | | Sbjct: 160 tccaacgtcctcatcgtcggcctcaagggcctcggcgtcgagatcgccaagaacgtggcc 219 Query: 438 cttgctggtgtcaag 452 |||||||| |||||| Sbjct: 220 cttgctggcgtcaag 234
>emb|CR706170.3|CNS0G7TY Tetraodon nigroviridis full-length cDNA Length = 447 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 cctccacagccgccagctcg 339 |||||||||||||||||||| Sbjct: 23 cctccacagccgccagctcg 42
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 cctgcttttcgcggcggcggtcgg 172 ||||||| |||||||||||||||| Sbjct: 3214943 cctgcttctcgcggcggcggtcgg 3214920
>emb|AL445929.5| Human DNA sequence from clone RP11-408M7 on chromosome 13 Contains a CpG island, complete sequence Length = 169403 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gaaccttgtccttgctggtg 447 |||||||||||||||||||| Sbjct: 98995 gaaccttgtccttgctggtg 99014
>emb|AJ575136.1|SMA575136 Sordaria macrospora partial smu4370 gene for ubiquitin activating enzyme E1 homologue, exons 1-2 Length = 467 Score = 40.1 bits (20), Expect = 6.4 Identities = 61/75 (81%) Strand = Plus / Plus Query: 378 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 437 |||||||||||| | ||| ||| |||| ||||||| ||| ||||| ||||| | | | Sbjct: 29 tccaacgtcctcatcgtcggcctcaagggtctcggcgtcgagatcgccaagaacgtcgcc 88 Query: 438 cttgctggtgtcaag 452 ||||||||||||||| Sbjct: 89 cttgctggtgtcaag 103
>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor Length = 2674 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gcctgcttttcgcggcggcg 167 |||||||||||||||||||| Sbjct: 2429 gcctgcttttcgcggcggcg 2410
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 40.1 bits (20), Expect = 6.4 Identities = 61/75 (81%) Strand = Plus / Plus Query: 378 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 437 |||||||||||| | ||| ||| |||||||||||| ||| ||||| ||||| | | | Sbjct: 151316 tccaacgtcctcatcgtcggcctcaagggcctcggcgtcgagatcgccaagaacgtggcc 151375 Query: 438 cttgctggtgtcaag 452 |||||||| |||||| Sbjct: 151376 cttgctggcgtcaag 151390
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 tggcagggaggcccacggagatcg 312 |||||||| ||||||||||||||| Sbjct: 3995320 tggcagggcggcccacggagatcg 3995297
>gb|AC084388.1| Mus musculus clone RP23-132G6, complete sequence Length = 208754 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 attctctcatcttcctcata 51 |||||||||||||||||||| Sbjct: 185563 attctctcatcttcctcata 185544
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 cctgcttttcgcggcggcggtcgg 172 ||||||| |||||||||||||||| Sbjct: 4599415 cctgcttctcgcggcggcggtcgg 4599392
>gb|AC107751.11| Mus musculus chromosome 15, clone RP23-244L21, complete sequence Length = 188768 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 attctctcatcttcctcata 51 |||||||||||||||||||| Sbjct: 63649 attctctcatcttcctcata 63668
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gacgccgacgacgccatggc 286 |||||||||||||||||||| Sbjct: 22103919 gacgccgacgacgccatggc 22103900
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ccccgctgacgccgacgacg 279 |||||||||||||||||||| Sbjct: 13170622 ccccgctgacgccgacgacg 13170603
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cggtcgggctcatcggcggc 185 |||||||||||||||||||| Sbjct: 2968702 cggtcgggctcatcggcggc 2968683
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ctgcttttcgcggcggcggt 169 |||||||||||||||||||| Sbjct: 2131662 ctgcttttcgcggcggcggt 2131643
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ccccgctgacgccgacgacg 279 |||||||||||||||||||| Sbjct: 87810 ccccgctgacgccgacgacg 87791
>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1117_F10 Length = 169948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gacgccgacgacgccatggc 286 |||||||||||||||||||| Sbjct: 66882 gacgccgacgacgccatggc 66863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,203,744 Number of Sequences: 3902068 Number of extensions: 3203744 Number of successful extensions: 70051 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68678 Number of HSP's gapped (non-prelim): 1365 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
