ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_460750.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 0.81
2gb|AC155224.3| Rhinolophus ferrumequinum clone VMRC7-156J7, comp... 42 0.81
3emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 42 0.81
4emb|BX666060.8| Zebrafish DNA sequence from clone CH211-133N22 i... 42 0.81
5gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 42 0.81
6emb|CR405682.23| Zebrafish DNA sequence from clone DKEYP-67E6 in... 42 0.81
7emb|AL935064.7| Zebrafish DNA sequence from clone CH211-153K23, ... 42 0.81
8emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in ... 40 3.2
9emb|BX511311.24| Zebrafish DNA sequence from clone DKEY-278G4 in... 40 3.2
10emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in ... 40 3.2
11emb|CR381537.13| Zebrafish DNA sequence from clone DKEYP-9F9 in ... 40 3.2
12emb|BX548042.7| Zebrafish DNA sequence from clone DKEY-146L4 in ... 40 3.2
13emb|AJ781400.1| Cherry chlorotic rusty spot associated chrysovir... 40 3.2
14gb|DQ320509.1| Lactobacillus gasseri phage KC5a, complete genome 40 3.2
15gb|AC091610.3| Homo sapiens chromosome 1 clone RP11-220M1, compl... 40 3.2
16emb|AL953848.17| Zebrafish DNA sequence from clone CH211-244K5 i... 40 3.2
17gb|AF055171.1|AF055171 Haemonchus contortus clone IBD-pns65 P-gl... 40 3.2
18emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, ... 40 3.2
19emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 i... 40 3.2
20emb|CR450709.12| Zebrafish DNA sequence from clone CH211-249J24 ... 40 3.2
21emb|BX927341.21| Zebrafish DNA sequence from clone DKEY-56J1 in ... 40 3.2
22emb|AL772220.7| Mouse DNA sequence from clone RP23-409N18 on chr... 40 3.2

>ref|XM_460750.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F09823g)
           partial mRNA
          Length = 3270

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 9   catctttattctcctcttcac 29
           |||||||||||||||||||||
Sbjct: 118 catctttattctcctcttcac 98



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>gb|AC155224.3| Rhinolophus ferrumequinum clone VMRC7-156J7, complete sequence
          Length = 13754

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 3    ccctcccatctttattctcctcttc 27
            |||||||||||||||||| ||||||
Sbjct: 4056 ccctcccatctttattcttctcttc 4032



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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
              hansenii
          Length = 2336804

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      catctttattctcctcttcac 29
              |||||||||||||||||||||
Sbjct: 782858 catctttattctcctcttcac 782878



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>emb|BX666060.8| Zebrafish DNA sequence from clone CH211-133N22 in linkage group 5,
             complete sequence
          Length = 180348

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    tctttattctcctcttcacat 31
             |||||||||||||||||||||
Sbjct: 96899 tctttattctcctcttcacat 96879



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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 3      ccctcccatctttattctcctcttc 27
              |||||||||||||||||| ||||||
Sbjct: 411211 ccctcccatctttattcttctcttc 411187



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>emb|CR405682.23| Zebrafish DNA sequence from clone DKEYP-67E6 in linkage group 12,
              complete sequence
          Length = 192457

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 138    gccgacctgctgctccgcctc 158
              |||||||||||||||||||||
Sbjct: 164642 gccgacctgctgctccgcctc 164662



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>emb|AL935064.7| Zebrafish DNA sequence from clone CH211-153K23, complete sequence
          Length = 157256

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     tctttattctcctcttcacat 31
              |||||||||||||||||||||
Sbjct: 153799 tctttattctcctcttcacat 153779



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>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete
              sequence
          Length = 242558

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 133762 ccgacctgctgctccgcctc 133781



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>emb|BX511311.24| Zebrafish DNA sequence from clone DKEY-278G4 in linkage group 8,
            complete sequence
          Length = 242845

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 139  ccgacctgctgctccgcctc 158
            ||||||||||||||||||||
Sbjct: 3318 ccgacctgctgctccgcctc 3337



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>emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in linkage group 6, complete
              sequence
          Length = 233655

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 124894 ccgacctgctgctccgcctc 124913



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>emb|CR381537.13| Zebrafish DNA sequence from clone DKEYP-9F9 in linkage group 14, complete
              sequence
          Length = 184228

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 175423 ccgacctgctgctccgcctc 175404



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>emb|BX548042.7| Zebrafish DNA sequence from clone DKEY-146L4 in linkage group 20
             Contains a novel gene and four CpG islands, complete
             sequence
          Length = 224072

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ccgacctgctgctccgcctc 158
             ||||||||||||||||||||
Sbjct: 34346 ccgacctgctgctccgcctc 34365



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>emb|AJ781400.1| Cherry chlorotic rusty spot associated chrysovirus ORF4 for
            hypothetical protein, segment 4, genomic RNA
          Length = 2499

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   ctcctcttcacatgccattg 38
            ||||||||||||||||||||
Sbjct: 1792 ctcctcttcacatgccattg 1773



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>gb|DQ320509.1| Lactobacillus gasseri phage KC5a, complete genome
          Length = 38239

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tcccatctttattctcctct 25
             ||||||||||||||||||||
Sbjct: 15387 tcccatctttattctcctct 15368



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>gb|AC091610.3| Homo sapiens chromosome 1 clone RP11-220M1, complete sequence
          Length = 168506

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tcccatctttattctcctct 25
             ||||||||||||||||||||
Sbjct: 36630 tcccatctttattctcctct 36649



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>emb|AL953848.17| Zebrafish DNA sequence from clone CH211-244K5 in linkage group 6,
              complete sequence
          Length = 201360

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 150473 ccgacctgctgctccgcctc 150454



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>gb|AF055171.1|AF055171 Haemonchus contortus clone IBD-pns65 P-glycoprotein mRNA, partial
           cds
          Length = 297

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 gctcgattcacacgaccttc 180
           ||||||||||||||||||||
Sbjct: 51  gctcgattcacacgaccttc 70



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>emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, complete sequence
          Length = 164682

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 142694 ccgacctgctgctccgcctc 142675



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>emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 in linkage group 4,
              complete sequence
          Length = 166476

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 112332 ccgacctgctgctccgcctc 112313



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>emb|CR450709.12| Zebrafish DNA sequence from clone CH211-249J24 in linkage group 11,
              complete sequence
          Length = 157745

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 153710 ccgacctgctgctccgcctc 153691



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>emb|BX927341.21| Zebrafish DNA sequence from clone DKEY-56J1 in linkage group 14, complete
              sequence
          Length = 203575

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    ccgacctgctgctccgcctc 158
              ||||||||||||||||||||
Sbjct: 187112 ccgacctgctgctccgcctc 187131



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>emb|AL772220.7| Mouse DNA sequence from clone RP23-409N18 on chromosome 4, complete
             sequence
          Length = 176159

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    tctcctcttcacatgccatt 37
             ||||||||||||||||||||
Sbjct: 76202 tctcctcttcacatgccatt 76183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,393,417
Number of Sequences: 3902068
Number of extensions: 1393417
Number of successful extensions: 24573
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24535
Number of HSP's gapped (non-prelim): 38
length of query: 249
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 227
effective length of database: 17,147,199,772
effective search space: 3892414348244
effective search space used: 3892414348244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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