ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NEDD1_HUMAN (Q8NHV4) Protein NEDD1 28 6.7
2YFHE_SCHPO (O42851) Hypothetical protein C23A1.14c in chromosome I 28 8.8

>NEDD1_HUMAN (Q8NHV4) Protein NEDD1|
          Length = 660

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 30  FLTGSPIQSKVDLYSMDASLSSIPFGHG 113
           ++    +  ++ L+S+  +LSS PFGHG
Sbjct: 133 YIASGSLSGEIILHSVTTNLSSTPFGHG 160



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>YFHE_SCHPO (O42851) Hypothetical protein C23A1.14c in chromosome I|
          Length = 398

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 314 NLLLISQTVPK*CCCCVKYMWHASS 388
           ++LL S TV K  CC +KY  HA+S
Sbjct: 327 SVLLKSDTVAKHLCCELKYFHHATS 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,633,601
Number of Sequences: 219361
Number of extensions: 957868
Number of successful extensions: 1400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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