ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl30b01 |
|---|---|
| Clone Library Name | barley_pub |
>CLH_DICDI (P25870) Clathrin heavy chain| Length = 1694 Score = 211 bits (538), Expect = 7e-55 Identities = 101/160 (63%), Positives = 125/160 (78%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDR+ F+ DLT+YLY NN+ +YIE YVQK+NP N PLVVG LLD +C ED+++ LI+SV Sbjct: 778 VCDRYEFISDLTNYLYKNNLSKYIEAYVQKINPVNTPLVVGALLDLDCQEDYLRNLIMSV 837 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 R++ P + LV++ EKRNRL+LL +LE V+EG + +HNAL KI IDSN NPE FL Sbjct: 838 RNMCPADSLVEQVEKRNRLKLLLPWLEARVAEGNIEPAIHNALAKIYIDSNKNPEAFLLH 897 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 N FYDS+VVGKYCEKRDP L+ VAY+RG CD ELI VTNK Sbjct: 898 NQFYDSKVVGKYCEKRDPYLSFVAYKRGLCDYELIEVTNK 937
>CLH_MOUSE (Q68FD5) Clathrin heavy chain| Length = 1675 Score = 207 bits (527), Expect = 1e-53 Identities = 104/160 (65%), Positives = 117/160 (73%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDRF FV DL YLY NN+ +YIE YVQKVNP P+V+G LLD +C ED IK LIL V Sbjct: 777 VCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVV 836 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 R + LV E EKRNRL+LL +LE + EG ++ HNAL KI IDSNNNPE FL Sbjct: 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRE 896 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 NP+YDSRVVGKYCEKRDP LA VAY RGQCD ELINV N+ Sbjct: 897 NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNE 936
>CLH_BOVIN (P49951) Clathrin heavy chain| Length = 1675 Score = 207 bits (527), Expect = 1e-53 Identities = 104/160 (65%), Positives = 117/160 (73%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDRF FV DL YLY NN+ +YIE YVQKVNP P+V+G LLD +C ED IK LIL V Sbjct: 777 VCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVV 836 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 R + LV E EKRNRL+LL +LE + EG ++ HNAL KI IDSNNNPE FL Sbjct: 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRE 896 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 NP+YDSRVVGKYCEKRDP LA VAY RGQCD ELINV N+ Sbjct: 897 NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNE 936
>CLH1_HUMAN (Q00610) Clathrin heavy chain 1 (CLH-17)| Length = 1674 Score = 207 bits (527), Expect = 1e-53 Identities = 104/160 (65%), Positives = 117/160 (73%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDRF FV DL YLY NN+ +YIE YVQKVNP P+V+G LLD +C ED IK LIL V Sbjct: 776 VCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVV 835 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 R + LV E EKRNRL+LL +LE + EG ++ HNAL KI IDSNNNPE FL Sbjct: 836 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRE 895 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 NP+YDSRVVGKYCEKRDP LA VAY RGQCD ELINV N+ Sbjct: 896 NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNE 935
>CLH_RAT (P11442) Clathrin heavy chain| Length = 1675 Score = 205 bits (522), Expect = 5e-53 Identities = 103/160 (64%), Positives = 117/160 (73%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDRF FV DL YLY N++ +YIE YVQKVNP P+V+G LLD +C ED IK LIL V Sbjct: 777 VCDRFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVV 836 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 R + LV E EKRNRL+LL +LE + EG ++ HNAL KI IDSNNNPE FL Sbjct: 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRE 896 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 NP+YDSRVVGKYCEKRDP LA VAY RGQCD ELINV N+ Sbjct: 897 NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNE 936
>CLH2_HUMAN (P53675) Clathrin heavy chain 2 (CLH-22)| Length = 1640 Score = 197 bits (502), Expect = 1e-50 Identities = 99/160 (61%), Positives = 115/160 (71%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDRFGFV DL YLY NN+ RYIE YVQKVNP P V+G LLD +C E+ IK LI++V Sbjct: 777 VCDRFGFVHDLVLYLYRNNLQRYIEIYVQKVNPSRTPAVIGGLLDVDCSEEVIKHLIMAV 836 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 R + LV E EKRNRL+LL +LE + EG ++ HNAL KI IDSNN+PE FL Sbjct: 837 RGQFSTDELVAEVEKRNRLKLLLPWLESQIQEGCEEPATHNALAKIYIDSNNSPECFLRE 896 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 N +YDS VVG+YCEKRDP LA VAY RGQCD ELI V N+ Sbjct: 897 NAYYDSSVVGRYCEKRDPHLACVAYERGQCDLELIKVCNE 936
>CLH_DROME (P29742) Clathrin heavy chain| Length = 1678 Score = 197 bits (502), Expect = 1e-50 Identities = 100/160 (62%), Positives = 114/160 (71%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDRF FV DL YLY NN+ +YIE YVQKVNP P+VVG LLD +C ED IK LIL V Sbjct: 778 VCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDIIKNLILVV 837 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 + + LV+E EKRNRL+LL +LE V EG + HNAL KI IDSNNNPE +L Sbjct: 838 KGQFSTDELVEEVEKRNRLKLLLPWLESRVHEGCVEPATHNALAKIYIDSNNNPERYLKE 897 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 N +YDSRVVG+YCEKRDP LA VAY RG CD ELI V N+ Sbjct: 898 NQYYDSRVVGRYCEKRDPHLACVAYERGLCDRELIAVCNE 937
>CLH_CAEEL (P34574) Probable clathrin heavy chain protein 1| Length = 1681 Score = 196 bits (499), Expect = 2e-50 Identities = 95/160 (59%), Positives = 114/160 (71%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDR V DL YLY N + +YIE +VQKVN P+VVG LLD +C ED IK LI++ Sbjct: 779 VCDRHNMVHDLVLYLYRNQLQKYIEVFVQKVNAARLPIVVGALLDVDCSEDAIKQLIINT 838 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 R ++ LV+E EKRNRL+LL +LE + EGA D HNA+ KI IDSNNNPE FL Sbjct: 839 RGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATDAATHNAMAKIYIDSNNNPERFLKE 898 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 NP+YDS+VVGKYCEKRDP A ++Y RGQCD ELINV N+ Sbjct: 899 NPYYDSKVVGKYCEKRDPHYAFLSYERGQCDAELINVCNE 938
>CLH_SCHPO (Q10161) Probable clathrin heavy chain| Length = 1666 Score = 186 bits (471), Expect = 4e-47 Identities = 88/160 (55%), Positives = 117/160 (73%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDR+ FV DL YL+ NNM ++IE YVQ++NP P VVG LLD +C E+ ++ L++SV Sbjct: 774 VCDRYDFVNDLVFYLFRNNMFQFIEIYVQRINPSKTPQVVGALLDIDCDEELVQNLLMSV 833 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 +PV+ LV+E E+RNRL+LL +LE L+ G+QD +++AL KI IDSNNNPE FL Sbjct: 834 VGQVPVDELVEEVERRNRLKLLLPYLESLLQSGSQDRAIYDALAKIYIDSNNNPEVFLKE 893 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 N FYD+ VGKYCEKRDP LA +AY +G D E+IN+ N+ Sbjct: 894 NNFYDTLTVGKYCEKRDPYLAFIAYEKGGNDTEIINLCNE 933
>CLH_YEAST (P22137) Clathrin heavy chain| Length = 1653 Score = 174 bits (441), Expect = 1e-43 Identities = 87/160 (54%), Positives = 111/160 (69%) Frame = +2 Query: 2 VCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSV 181 VCDRF FV ++ YLY + L++IE YVQ+VNP VVG LLD +C E FI+ L+ SV Sbjct: 783 VCDRFDFVHEMILYLYKSQNLKFIETYVQQVNPSKTAQVVGALLDMDCDEAFIQSLLQSV 842 Query: 182 RSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTT 361 +P+ L E EKRNRL++L FLE +S+G QD V+NAL KI IDSNN+PE FL Sbjct: 843 LGQVPINELTTEVEKRNRLKILLPFLEQSLSQGIQDQAVYNALAKIYIDSNNSPEKFLKE 902 Query: 362 NPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNK 481 N YD+ VG YCEKRDP LA +AY +GQ D++LI +TN+ Sbjct: 903 NDQYDTLDVGHYCEKRDPYLAYIAYEKGQNDDDLIRITNE 942
>CLPX_DESVH (Q72CE7) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 417 Score = 32.7 bits (73), Expect = 0.58 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = +2 Query: 77 GYVQKV-NPGNAPLVVGQLLDDECPEDFIK-GLILSVRSLLPVEPLVDECEKRNRLRLLT 250 G+ KV N + PL G+LLD P D +K GLI +PV VDE + + +R+LT Sbjct: 266 GFGAKVSNRKDRPL--GELLDQVHPNDLVKFGLIPEFIGRIPVVTHVDELGEEDLIRILT 323 Query: 251 QFLEHLVSE 277 + LV + Sbjct: 324 EPKNALVRQ 332
>CLPX_BORPA (Q7W8X1) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 434 Score = 32.3 bits (72), Expect = 0.75 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +2 Query: 119 VGQLLDDECPEDFIK-GLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSE 277 VG+L + PED IK GLI + LPV +DE ++ +++LT+ LV + Sbjct: 282 VGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQ 335
>CLPX_BORBR (Q7WK82) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 434 Score = 32.3 bits (72), Expect = 0.75 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +2 Query: 119 VGQLLDDECPEDFIK-GLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSE 277 VG+L + PED IK GLI + LPV +DE ++ +++LT+ LV + Sbjct: 282 VGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQ 335
>CLPX_BORPE (Q7VXI6) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 434 Score = 32.0 bits (71), Expect = 0.98 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +2 Query: 119 VGQLLDDECPEDFIK-GLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSE 277 VG+L + PED IK GLI + LPV +DE ++ +++LT+ LV + Sbjct: 282 VGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAVLVQILTEPKNALVKQ 335
>CAD87_DROME (Q9VGG5) Cadherin 87A precursor| Length = 1975 Score = 32.0 bits (71), Expect = 0.98 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Frame = +2 Query: 44 LYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVDECE 223 LY N + + ++ +P +P+ G + D D + G I ++ L + E Sbjct: 36 LYENVTVGTVVFRLEAYDPEGSPVTYGAIGADHFSVDPVSGNITLIKPL--------DRE 87 Query: 224 KRNRLRLLTQFLEHLVSEGA--QDVHVHNALGKIIIDSNNNPEHFLTT 361 +++ L+ L + + EG +D V + II+D N+NP F T Sbjct: 88 EKDTLKFLVSIRDRVDPEGESERDNVVEVPITFIILDLNDNPPEFQNT 135
>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:| Apolipoprotein B-48 (Apo B-48)] Length = 4563 Score = 32.0 bits (71), Expect = 0.98 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Frame = +2 Query: 17 GFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVV---GQLLDDECPEDFIKGLILSVRS 187 GF PD N L ++ G +V G + ++V G DD+ +D + G++LSV Sbjct: 709 GFFPDSV-----NKALYWVNG---QVPDGVSKVLVDHFGYTKDDKHEQDMVNGIMLSVEK 760 Query: 188 LLPVEPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIII 325 L+ + E R LR+L + L G +H LGK+++ Sbjct: 761 LIKDLKSKEVPEARAYLRILGEEL------GFASLHDLQLLGKLLL 800
>CLPX_XYLFT (Q87E50) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 426 Score = 31.6 bits (70), Expect = 1.3 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +2 Query: 77 GYVQKVNPGNAPLVVGQLLDDECPEDFIK-GLILSVRSLLPVEPLVDECEKRNRLRLLTQ 253 G+ KV + VG++L PED IK GLI LPV +DE ++ +++LT+ Sbjct: 271 GFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELDESALVKILTE 330
>CLPX_XYLFA (Q9PE40) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 426 Score = 31.6 bits (70), Expect = 1.3 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +2 Query: 77 GYVQKVNPGNAPLVVGQLLDDECPEDFIK-GLILSVRSLLPVEPLVDECEKRNRLRLLTQ 253 G+ KV + VG++L PED IK GLI LPV +DE ++ +++LT+ Sbjct: 271 GFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELDESALVKILTE 330
>SYC_ANAMM (Q5PB14) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 2.2 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Frame = +2 Query: 29 DLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVE-- 202 + Y N L G + GN V G LL + + I+ + LS P++ Sbjct: 252 EYARYWVHNGFLTVNGGEKMSKSLGNVITVRG-LLSNGVDGEVIRYVFLSTHYRKPLDWG 310 Query: 203 --PLVDECEKRNRL-RLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNP 343 ++D E N++ R F L+S G +DV VH+A+ + D N P Sbjct: 311 DKAVLDAKEALNKIYRSCEGFSAQLLSTGLEDVGVHDAVMASLRDDMNTP 360
>LPHN3_MOUSE (Q80TS3) Latrophilin-3 (Lectomedin-3) (Fragment)| Length = 1189 Score = 30.8 bits (68), Expect = 2.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 46 VHKQYAPIHRRLCTEGEPWKCSVGSGAVT**RVPGRFH*G 165 V K+Y R C G+ + S+GSG + R PGR+ G Sbjct: 850 VRKEYGKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYSTG 889
>LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independent| alpha-latrotoxin receptor 3) (Lectomedin-3) Length = 1447 Score = 30.8 bits (68), Expect = 2.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 46 VHKQYAPIHRRLCTEGEPWKCSVGSGAVT**RVPGRFH*G 165 V K+Y R C G+ + S+GSG + R PGR+ G Sbjct: 1108 VRKEYGKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYSTG 1147
>LPHN3_BOVIN (O97827) Latrophilin-3 precursor| Length = 1580 Score = 30.4 bits (67), Expect = 2.9 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 46 VHKQYAPIHRRLCTEGEPWKCSVGSGAVT**RVPGRFH*G 165 V K+Y R C G + S+GSG + R PGR+ G Sbjct: 1198 VRKEYGKCLRTHCCSGRSTESSIGSGKTSGSRTPGRYSTG 1237
>RS1_LEULA (P50889) 40S ribosomal protein S1| Length = 429 Score = 30.0 bits (66), Expect = 3.7 Identities = 39/146 (26%), Positives = 61/146 (41%) Frame = +2 Query: 20 FVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPV 199 FV DL + + I+ V +++P NA L++ + + + V S L V Sbjct: 179 FVSDLNQFKNKD-----IKAQVIEIDPANARLILSR---KAVAAQELAAQLAEVFSKLSV 230 Query: 200 EPLVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPEHFLTTNPFYDS 379 +V+ R LT F V G D VH + +I D NP LT D Sbjct: 231 GEVVEGTVAR-----LTDF-GAFVDLGGVDGLVH--VSEISHDRVKNPADVLTKGDKVDV 282 Query: 380 RVVGKYCEKRDPTLAVVAYRRGQCDE 457 +++ EK +L++ A +RG DE Sbjct: 283 KILALDTEKGRISLSIKATQRGPWDE 308
>TAT_BIV27 (P19565) TAT protein (Transactivating regulatory protein) (S ORF)| Length = 103 Score = 30.0 bits (66), Expect = 3.7 Identities = 9/13 (69%), Positives = 9/13 (69%) Frame = +1 Query: 274 RGCPRCACPQCSW 312 R CP C CP CSW Sbjct: 36 RDCPHCCCPICSW 48
>TAT_BIV06 (P19564) TAT protein (Transactivating regulatory protein) (S ORF)| Length = 103 Score = 30.0 bits (66), Expect = 3.7 Identities = 9/13 (69%), Positives = 9/13 (69%) Frame = +1 Query: 274 RGCPRCACPQCSW 312 R CP C CP CSW Sbjct: 36 RDCPHCCCPICSW 48
>CLPX_VIBPA (Q87R79) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 426 Score = 30.0 bits (66), Expect = 3.7 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +2 Query: 77 GYVQKVNPGNAPLVVGQLLDDECPEDFIK-GLILSVRSLLPVEPLVDECEKRNRLRLLTQ 253 G+ +V N VG+L PED +K GLI LPV + E ++ +++L + Sbjct: 271 GFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELDEEALIQILCE 330 Query: 254 FLEHLVSEGAQDVHVHNA 307 L + A + NA Sbjct: 331 PKNALTKQYAALFELENA 348
>NED4L_MOUSE (Q8CFI0) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) (Nedd4-2) (NEDD4.2) Length = 1004 Score = 29.3 bits (64), Expect = 6.4 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Frame = -3 Query: 347 AQDXXXXXX*FSQEHCGHAHLGHPRSLSAPRI-VSANVDGSSSRIHQPVARQEEEIEQTK 171 A+D S H + PRSLS+P + +SA ++G+ P+ R ++ T Sbjct: 450 AEDGASGSATNSNNHLVEPQIRRPRSLSSPTVTLSAPLEGAKD---SPIRR---AVKDTL 503 Query: 170 SNP------**NLPGTRHQVT 126 SNP N P +H+VT Sbjct: 504 SNPQSPQPSPYNSPKPQHKVT 524
>RPOC_THIDA (Q3SLQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 29.3 bits (64), Expect = 6.4 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +2 Query: 11 RFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDE 142 R G V D+T L + Y EG+V V PG PL GQLL +E Sbjct: 123 RLGMVLDMT--LRDIERVLYFEGFVV-VEPGMTPLNRGQLLTEE 163
>NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) Length = 959 Score = 29.3 bits (64), Expect = 6.4 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Frame = -3 Query: 347 AQDXXXXXX*FSQEHCGHAHLGHPRSLSAPRI-VSANVDGSSSRIHQPVARQEEEIEQTK 171 A+D S H + PRSLS+P + +SA ++G+ PV R ++ T Sbjct: 405 AEDGASGSATNSNNHLIEPQIRRPRSLSSPTVTLSAPLEGAKD---SPVRR---AVKDTL 458 Query: 170 SNP------**NLPGTRHQVT 126 SNP N P +H+VT Sbjct: 459 SNPQSPQPSPYNSPKPQHKVT 479
>ENGA_MYCPU (Q98RC1) GTP-binding protein engA| Length = 435 Score = 29.3 bits (64), Expect = 6.4 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Frame = +2 Query: 176 SVRSLLPVEP---LVDECEKRNRLRLLTQFLEHLVSEGAQDVHVHNALGKIIIDSNNNPE 346 S++S + +E + + NR L + ++H A + L IIID+ Sbjct: 213 SIKSTIEIEDQKFFIIDTAGINRKSKLVESVDHYALMRAMGSLDESDLSIIIIDATEELS 272 Query: 347 HFLTTNPFYDSRVVGKYCEKRDPTLAVV 430 HF ++R++G +K+ PT+ V+ Sbjct: 273 HF-------NARIIGYASDKKKPTIIVI 293
>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC| 6.3.2.-) (Nedd4-2) (NEDD4.2) Length = 975 Score = 29.3 bits (64), Expect = 6.4 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Frame = -3 Query: 347 AQDXXXXXX*FSQEHCGHAHLGHPRSLSAPRI-VSANVDGSSSRIHQPVARQEEEIEQTK 171 A+D S H + PRSLS+P + +SA ++G+ PV R ++ T Sbjct: 421 AEDGASGSATNSNNHLIEPQIRRPRSLSSPTVTLSAPLEGAKD---SPVRR---AVKDTL 474 Query: 170 SNP------**NLPGTRHQVT 126 SNP N P +H+VT Sbjct: 475 SNPQSPQPSPYNSPKPQHKVT 495
>ENGB_STAAR (Q6GG32) Probable GTP-binding protein engB| Length = 196 Score = 29.3 bits (64), Expect = 6.4 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +2 Query: 89 KVNPGNAPLVVGQLLDDECPEDFIKGLILSVRS 187 KVNP N L++ + +D+ PE + + LS RS Sbjct: 2 KVNPNNIELIISAVKEDQYPETELSEVALSGRS 34
>TCF15_CHICK (P79782) Transcription factor 15 (bHLH-EC2 protein) (Paraxis)| Length = 183 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Frame = +2 Query: 176 SVRSLLPVEPLVDECEKRNRLRLLTQFLEH-----LVSEGAQD 289 ++R+L+P EP+ + K LRL + ++ H L+ EG +D Sbjct: 83 ALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGEGCED 125
>SYD_METHJ (Q2FRU5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 430 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +2 Query: 269 VSEGAQDVHVHNALGKIIIDSNNNPEHF-LTTNPF 370 +S GAQ VH H+ L + I NPE+F NPF Sbjct: 354 LSSGAQRVHQHDLLVEQIAKKGLNPENFEFYLNPF 388
>CHLB_CHLMO (P17652) Light-independent protochlorophyllide reductase subunit B| (EC 1.18.-.-) (LI-POR subunit B) (DPOR subunit B) Length = 563 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +2 Query: 296 VHNALGKIIIDS---NNNPEHFLTTNPFYDSRVVGKYCEKRD 412 + L KI +S N N + LTTNP+++S + E RD Sbjct: 278 IERILNKIYFESLEGNVNTQSVLTTNPYFNSHINSTNSETRD 319
>ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600| Length = 722 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +1 Query: 22 CSRSYSLSVHKQYAPIHRRLCTEGEPWKCS 111 C L HKQY HRR T +P+KC+ Sbjct: 192 CDVCGKLFNHKQYLTCHRRCHTGEKPYKCN 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,383,415 Number of Sequences: 219361 Number of extensions: 1637360 Number of successful extensions: 5821 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5819 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
