Clone Information

BLAST Search Result

Clone Name	bastl30g10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NFYB2_ORYSA (Q5QMG3) Nuclear transcription factor Y subunit B-2 ...	46	3e-05
2	NFYB1_ARATH (Q9SLG0) Nuclear transcription factor Y subunit B-1 ...	46	3e-05
3	NFYB_MAIZE (P25209) Nuclear transcription factor Y subunit B (NF...	45	3e-05
4	NFYB4_ORYSA (Q65XK1) Nuclear transcription factor Y subunit B-4 ...	43	2e-04
5	NFYB3_ORYSA (Q60EQ4) Nuclear transcription factor Y subunit B-3 ...	42	3e-04
6	NFYB3_ARATH (O23310) Nuclear transcription factor Y subunit B-3 ...	39	0.003
7	NFYB7_ARATH (Q9SIT9) Nuclear transcription factor Y subunit B-7 ...	38	0.005
8	NFYB8_ARATH (Q8VYK4) Nuclear transcription factor Y subunit B-8 ...	37	0.009
9	NFYB2_ARATH (Q9FGJ3) Nuclear transcription factor Y subunit B-2 ...	36	0.026
10	NFYBA_ARATH (Q67XJ2) Nuclear transcription factor Y subunit B-10...	35	0.034
11	COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor	35	0.045
12	CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor	35	0.059
13	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	33	0.17
14	COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor	32	0.50
15	COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor	30	1.4
16	COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor	30	1.4
17	CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (End...	30	1.9
18	GFRA3_HUMAN (O60609) GDNF family receptor alpha-3 precursor (GFR...	29	2.5
19	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	29	2.5
20	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	29	2.5
21	STRN4_HUMAN (Q9NRL3) Striatin-4 (Zinedin)	29	2.5
22	RGS3_MOUSE (Q9DC04) Regulator of G-protein signaling 3 (RGS3) (C...	29	2.5
23	IF2_CORJK (Q4JV51) Translation initiation factor IF-2	29	3.2
24	TRA1_CAEEL (P34708) Sex-determining transformer protein 1 (Herma...	29	3.2
25	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	29	3.2
26	DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re...	29	3.2
27	CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor	28	4.2
28	DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3...	28	4.2
29	CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor	28	4.2
30	K0084_HUMAN (Q14699) Protein KIAA0084 (HA2022) (Fragment)	28	4.2
31	DDR1_RAT (Q63474) Epithelial discoidin domain-containing recepto...	28	4.2
32	MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p...	28	4.2
33	FTHS_LACJO (Q74JC1) Formate--tetrahydrofolate ligase (EC 6.3.4.3...	28	4.2
34	BRO1_CANGA (Q6FJG8) Vacuolar protein-sorting protein BRO1 (BRO d...	28	4.2
35	CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor	28	5.5
36	YMI3_YEAST (Q04526) Hypothetical 47.3 kDa protein in TUB1-CPR3 i...	28	5.5
37	SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr...	28	5.5
38	COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor	28	5.5
39	KI21B_MOUSE (Q9QXL1) Kinesin family member 21B (Kinesin-like pro...	28	5.5
40	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	28	7.2
41	COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undu...	28	7.2
42	MTD5_DACSA (P50185) Modification methylase DsaV (EC 2.1.1.37) (C...	28	7.2
43	TBX22_MOUSE (Q8K402) T-box transcription factor TBX22 (T-box pro...	28	7.2
44	ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline...	28	7.2
45	DDR1_MOUSE (Q03146) Epithelial discoidin domain-containing recep...	28	7.2
46	BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2....	28	7.2
47	PYRD_PSEAE (Q9HZF8) Dihydroorotate dehydrogenase (EC 1.3.3.1) (D...	28	7.2
48	COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Co...	28	7.2
49	PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate pho...	28	7.2
50	TGBR3_PIG (P35054) TGF-beta receptor type III precursor (TGFR-3)...	28	7.2
51	YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6	27	9.4
52	SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D pre...	27	9.4
53	PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate pho...	27	9.4
54	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	27	9.4
55	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	27	9.4
56	TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2....	27	9.4

>NFYB2_ORYSA (Q5QMG3) Nuclear transcription factor Y subunit B-2 (OsNF-YB-2)|
           (Transcriptional activator HAP3A)
          Length = 178

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = +2

Query: 167 SGSPTAGGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           SGSP   G   E+  FLP A+I RI +KA P NG+I ++A   +Q  VSEF+
Sbjct: 23  SGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFI 74

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>NFYB1_ARATH (Q9SLG0) Nuclear transcription factor Y subunit B-1 (AtNF-YB-1)|
           (Transcriptional activator HAP3A)
          Length = 141

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
 Frame = +2

Query: 182 AGGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           +GGS  E+  +LP A+I RI +KA PPNG+I ++A   VQ  VSEF+
Sbjct: 15  SGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFI 61

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>NFYB_MAIZE (P25209) Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box|
           DNA-binding protein subunit B)
          Length = 179

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
 Frame = +2

Query: 167 SGSPTAGG---SRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           SGSP  GG   S  E+  FLP A+I RI +KA P NG+I ++A   VQ  VSEF+
Sbjct: 17  SGSPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFI 71

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>NFYB4_ORYSA (Q65XK1) Nuclear transcription factor Y subunit B-4 (OsNF-YB-4)|
           (Transcriptional activator HAP3C)
          Length = 143

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 170 GSPTAGGSRDERGAFLPFADIRRITRKATPPNGEI---DEEAVQGLVSEFV 313
           G    GG   E+  FLP A+I RI R+A P NG+I    +E+VQ  VSEF+
Sbjct: 12  GGGGGGGVGKEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFI 62

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>NFYB3_ORYSA (Q60EQ4) Nuclear transcription factor Y subunit B-3 (OsNF-YB-3)|
           (Transcriptional activator HAP3B)
          Length = 185

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 170 GSPTAGGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           G    GG   E+  FLP A+I RI +KA P NG+I ++A   VQ  VSEF+
Sbjct: 28  GGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFI 78

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>NFYB3_ARATH (O23310) Nuclear transcription factor Y subunit B-3 (AtNF-YB-3)|
           (Transcriptional activator HAP3C)
          Length = 161

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = +2

Query: 167 SGSPTAGG--SRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           SG    GG  S  E+  FLP A++ RI +KA P N +I ++A   VQ  VSEF+
Sbjct: 8   SGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 61

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>NFYB7_ARATH (Q9SIT9) Nuclear transcription factor Y subunit B-7 (AtNF-YB-7)|
          Length = 215

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
 Frame = +2

Query: 170 GSPTA-----GGSRDERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           GSP++       +  E+  FLP A++ RI +K  P NG+I ++A   VQ  VSEF+
Sbjct: 21  GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFI 76

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>NFYB8_ARATH (Q8VYK4) Nuclear transcription factor Y subunit B-8 (AtNF-YB-8)|
          Length = 173

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
 Frame = +2

Query: 170 GSPTAGGSRD-------ERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           GS  +GG +        E+  FLP A+I RI ++  P NG+I ++A   VQ  VSEF+
Sbjct: 13  GSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFI 70

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>NFYB2_ARATH (Q9FGJ3) Nuclear transcription factor Y subunit B-2 (AtNF-YB-2)|
           (Transcriptional activator HAP3B)
          Length = 190

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +2

Query: 200 ERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           E+  FLP A++ RI +KA P N +I ++A   +Q  VSEF+
Sbjct: 27  EQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFI 67

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>NFYBA_ARATH (Q67XJ2) Nuclear transcription factor Y subunit B-10 (AtNF-YB-10)|
          Length = 176

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
 Frame = +2

Query: 170 GSPTAGGSRD-------ERGAFLPFADIRRITRKATPPNGEIDEEA---VQGLVSEFV 313
           GS  +GG +        E+  FLP A+I RI ++  P NG+I ++A   +Q  VSEF+
Sbjct: 12  GSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

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>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 35.0 bits (79), Expect = 0.045
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 222 KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAG--GLDMPSRRLRKGTIGQPDRNPKPLERE 49
           +G N P+  + P   GLP  R PP P G+ G  G+ +P +   +G  G+P     P E+ 
Sbjct: 120 RGLNGPKGDIGP--AGLPGPRGPPGPPGIPGPAGISVPGKPGPQGPTGEPGPRGFPGEKG 177

Query: 48  AS 43
            S
Sbjct: 178 TS 179

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>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 222  KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61
            KG    +    PP +G+P +R     +G+AG    P  +  KG+IG P     P
Sbjct: 1043 KGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSP 1096

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 222  KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQP 79
            KG   P+     P VG+P    PP P G+ G L +P      G +G P
Sbjct: 2359 KGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFP 2406

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>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 222 KGRNAPRSSLLPPAVGLPLMRLPPSPEGLAG--GLDMPSRRLRKGTIGQPDRNPKPLERE 49
           +G   P+  + P   GLP  R PP P G+ G  G+ +P +  ++G  G P     P E+ 
Sbjct: 120 RGPYGPKGDVGP--AGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKG 177

Query: 48  A 46
           A
Sbjct: 178 A 178

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>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 177 GLPLMRLPPSPEGLAG--GLDMPSRRLRKGTIGQPDRNPKPLEREA 46
           GLP  R PP P G+ G  G+ +P +  ++G  G P     P E+ A
Sbjct: 133 GLPGPRGPPGPPGIPGPAGISVPGKPGQQGLTGAPGPRGFPGEKGA 178

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>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor|
          Length = 1603

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 207 PRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPK-PLEREASVGDT 31
           P +  LP   GLP  R PP P G  G    P  +   G +G P  +   P  R+   G T
Sbjct: 795 PGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQT 854

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>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -2

Query: 240 MRLISAKGRNAPRSSLLPPAVGLPLMRLPPSPEGL-----AGGLDMPSRRLRKGTIGQPD 76
           M +  AKG   P+  + P  +G+P  + PP P GL      GG  +P +   KG     D
Sbjct: 172 MGMPGAKGEIGPKGEIGP--MGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKG-----D 224

Query: 75  RNPK 64
           R PK
Sbjct: 225 RGPK 228

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>GFRA3_HUMAN (O60609) GDNF family receptor alpha-3 precursor (GFR-alpha-3)|
          Length = 400

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 192 LPPAVGLPLMRLPPSPEGLAGGLDMPS 112
           LPP V + L+ LPPSP  LA G  +P+
Sbjct: 10  LPPVVLMLLLLLPPSPLPLAAGDPLPT 36

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 32/107 (29%), Positives = 35/107 (32%), Gaps = 14/107 (13%)
 Frame = -2

Query: 339  PNGDLRAAGXXXXXXXXXXXXXXSPLGGVAFLVMR-LISAKGRNAPRSSLLPPAV----- 178
            P GD    G               PLG       R L    G   PR S  P  V     
Sbjct: 922  PKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESG 981

Query: 177  -----GLPLMRLPPSPE---GLAGGLDMPSRRLRKGTIGQPDRNPKP 61
                 GL   R PP P+   GLAG    P R    G+ G P R+  P
Sbjct: 982  KPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSP 1028

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>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1516

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -2

Query: 228  SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLERE 49
            S +G+  P     PP +G    + PP P G  G    P    +  ++  P   P P    
Sbjct: 1139 SIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1198

Query: 48   ASVGDTLGV 22
             ++G + GV
Sbjct: 1199 GTMGASSGV 1207

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>STRN4_HUMAN (Q9NRL3) Striatin-4 (Zinedin)|
          Length = 753

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 237 RLISAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGG 127
           R+ S  GR+   +  + P+ G P  R PP P GL+GG
Sbjct: 198 RVRSLLGRSLELNGAVEPSEGAP--RAPPGPAGLSGG 232

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>RGS3_MOUSE (Q9DC04) Regulator of G-protein signaling 3 (RGS3) (C2PA)|
          Length = 966

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
 Frame = -2

Query: 225 AKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDM-------PSRRLRKGTIGQPDRNP 67
           A  +N      LPP   LP  + P   + L  G D+       PS+ L  G    P ++P
Sbjct: 423 APSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDP 482

Query: 66  KPLEREASVGDTL 28
            P  +E  VG  L
Sbjct: 483 SP-SQELPVGQDL 494

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>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPE-GLAGGLDMPSRRLRKGTIGQPDRNPKP 61
           G  APR +  P + G P  R  P P  G AG  DMP    R G  G     PKP
Sbjct: 165 GGRAPRVANNPFSSGAPAERPAPRPRGGQAGPGDMPRPGSRPG--GAKKAGPKP 216

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>TRA1_CAEEL (P34708) Sex-determining transformer protein 1 (Hermaphrodization|
           of XO animals protein 2)
          Length = 1110

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 234 LISAKGRNAPRSSLLPPAVG---LPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPK 64
           L+ A+   +P S LLPP+     + +++ PP+P  +A   D+ + R     +      P 
Sbjct: 513 LLGAQSLLSPFSPLLPPSRAPNVMAMLQTPPTPTSVAPMFDIMTSRAPMAPVVSAPTAPA 572

Query: 63  PL 58
           PL
Sbjct: 573 PL 574

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 225 AKGRNAPRSSLLPPAVGLPLMRLPPSP--EGLAG-GLDMP 115
           A+GR  P++   PP   +P    PPSP  EG  G GL  P
Sbjct: 673 ARGRRPPQADASPPYARVPSGETPPSPSQEGEEGSGLSRP 712

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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -2

Query: 201 SSLLPPAVGLP-----LMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASV 40
           S+ +PPA  LP     ++  PP P  L GG+  PS  L  GT   P   P PL   A +
Sbjct: 568 SAAVPPAPPLPGDSGTVIPPPPPPPPLPGGVVPPSPPLPPGTCIPP---PPPLPGGACI 623

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>CO8A1_MOUSE (Q00780) Collagen alpha-1(VIII) chain precursor|
          Length = 743

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 240 MRLISAKGRNAPRSSLLPPAVGLPLMRLPPSPEGL-----AGGLDMPSRRLRKGTIGQPD 76
           M +  AKG   P+  + P  +G+P  + PP P GL      GG  +P +   KG  G P 
Sbjct: 172 MGMPGAKGEIGPKGEIGP--MGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKGERG-PK 228

Query: 75  RNPKP 61
             P P
Sbjct: 229 GPPGP 233

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>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC|
           3.1.3.16) (Neuronal tyrosine threonine phosphatase 1)
          Length = 663

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 240 MRLISAKGRNAPR----SSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGT 91
           ++L++A   + P       L+ PA G+PL RLPPS    A      +   R+G+
Sbjct: 300 LKLLAALQTDGPHLGTPEPLMGPAAGIPLPRLPPSTSESAATGSEAATAAREGS 353

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>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor|
          Length = 1685

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 177 GLPLMRLPPSPEGLAGGLDMP-SRRLRKGTIGQPDRNPKP 61
           GLP  R PP P G+ G    P   +  KG  G+P +  KP
Sbjct: 261 GLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKP 300

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>K0084_HUMAN (Q14699) Protein KIAA0084 (HA2022) (Fragment)|
          Length = 648

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASV 40
           GRN        P   +PL + P SP G   G ++  + + K T+  P+ NP  +  E   
Sbjct: 286 GRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSK-TLDGPESNPLEVHEEPLS 344

Query: 39  G 37
           G
Sbjct: 345 G 345

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>DDR1_RAT (Q63474) Epithelial discoidin domain-containing receptor 1|
           precursor (EC 2.7.10.1) (Epithelial discoidin domain
           receptor 1) (Tyrosine kinase DDR) (Discoidin receptor
           tyrosine kinase) (Tyrosine-protein kinase CAK) (Cell
           adhesion kinase) (Protein-
          Length = 910

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
 Frame = -2

Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNP--------KPLEREASVGD 34
           P   G P    P  P G A  L  P+ RL   T  +P R P        KP   +A  GD
Sbjct: 484 PRPRGTPTHSAPCVPNGSALLLSNPAYRLLLATYARPPRGPGPPTPAWAKPTNTQACSGD 543

Query: 33  TLGVER 16
            +  E+
Sbjct: 544 YMEPEK 549

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>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 17   LSTPKVSPTLASRSKGLGFRSG*PIVPLRRRREG 118
            ++TPKV P  A+ S GLG + G  ++  R  R G
Sbjct: 2861 IATPKVEPAPAANSLGLGLKPGQSMMGSRDTRMG 2894

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>FTHS_LACJO (Q74JC1) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 557

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = -2

Query: 165 MRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASVGDTLGVE 19
           + L P+   L  G+D+  R LRK TIGQ  R    +E EAS   T+  E
Sbjct: 156 LELDPNRILLKRGIDVNDRTLRKITIGQGSRF-NGIEHEASFAITVANE 203

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>BRO1_CANGA (Q6FJG8) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 888

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 198 SLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61
           +++PP+       LPP P  +   +D   + +  G++  P R P+P
Sbjct: 723 NVIPPS-------LPPQPRNVGSSIDSQFQSMNLGSVPTPQRFPQP 761

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>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 177 GLPLMRLPPSPEGLAGGLDMP-SRRLRKGTIGQPDRNPKP 61
           GLP  R PP P G+ G    P   +  KG  G+P +  KP
Sbjct: 261 GLPGDRGPPGPPGIRGPPGPPGGMKGEKGEQGEPGKRGKP 300

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>YMI3_YEAST (Q04526) Hypothetical 47.3 kDa protein in TUB1-CPR3 intergenic|
           region
          Length = 418

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 210 APRSSLLPPAVGLPLMRLPPSP 145
           AP   L P A+ LP ++LPPSP
Sbjct: 102 APSPPLAPVAIKLPDLKLPPSP 123

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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3262

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -2

Query: 171 PLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASVGDTLGVERRRAV 4
           P    PP P G     D P R   +G +G+ +    P ++E    D   + R RA+
Sbjct: 555 PAATQPPPPSGAGKSGDEPGRPRSRGPVGRTEPGEGP-QQEIKRRDQFPLTRSRAI 609

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>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 186 PAVGLP--LMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61
           PAV  P  L+  PP PEG AG +  P  +   G +G P     P
Sbjct: 388 PAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPP 431

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>KI21B_MOUSE (Q9QXL1) Kinesin family member 21B (Kinesin-like protein KIF6)|
          Length = 1668

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 246  LVMRLISAKGRNAPRSSLLPPAVGLPLMRLPPSP 145
            L  R+++ KGR  P   L PP + LP++  P  P
Sbjct: 1624 LPRRVLAIKGRAPPCPDLPPPPLTLPILPFPVFP 1657

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPEGLAG 130
           G  +PR  L+P     P  +L P PEG AG
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAG 135

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>COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undulin)|
          Length = 1796

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -2

Query: 222  KGRNAPRSSLLPPAVGLPLMRLPPSPEG-----LAGGLDMPSRRLRKGTIGQP 79
            KG + PR       +GLP  + PP P+G     + G   MP  +  KG  G P
Sbjct: 1485 KGPDGPRGE-----IGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLP 1532

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>MTD5_DACSA (P50185) Modification methylase DsaV (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase DsaV) (M.DsaV)
          Length = 351

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = -2

Query: 135 AGGLDMPSRRLRKGTIGQPDRN--------PKPLEREASVGDTLGVE 19
           A   ++P +R R   +G  D+N        PKP+E  A VGD L  E
Sbjct: 148 ATDFNLPQKRERIFIVGFQDKNNKNLIFDFPKPIELTAKVGDLLEKE 194

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>TBX22_MOUSE (Q8K402) T-box transcription factor TBX22 (T-box protein 22)|
          Length = 517

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 228 SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGL 136
           S+ G  +P +SLL P+   P++ +PPS  G+
Sbjct: 324 SSGGAPSPLNSLLSPSCSPPMVYIPPSSFGM 354

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>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein|
           1) (NDPP-1)
          Length = 802

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -2

Query: 228 SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKP 61
           S  G+      +LP  V  P+ ++PPSP    G LD  +  +       P   P P
Sbjct: 390 SPPGKATGPRPVLPVCVSSPVPQMPPSPTAPNGSLDSVTYPVSPPPTSGPAAPPPP 445

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>DDR1_MOUSE (Q03146) Epithelial discoidin domain-containing receptor 1|
           precursor (EC 2.7.10.1) (Epithelial discoidin domain
           receptor 1) (Tyrosine kinase DDR) (Discoidin receptor
           tyrosine kinase) (Tyrosine-protein kinase CAK) (Cell
           adhesion kinase) (Protei
          Length = 911

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
 Frame = -2

Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNP--------KPLEREASVGD 34
           P   G P    P  P G A  L  P+ RL   T  +P R P        KP   +A  GD
Sbjct: 485 PRPRGTPPHSAPCVPNGSALLLSNPAYRLLLATYARPPRGPGPPTPAWAKPTNTQACSGD 544

Query: 33  TLGVER 16
            +  E+
Sbjct: 545 YMEPEK 550

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>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1|
           kinase) (SAD1A)
          Length = 794

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 161 RISGSPTAGGSRDERGAFLPFADIRRITRKATPPNGEIDEEAVQGLVS 304
           +I   P   G + E    L  A  RR+  ++ P NGE+D + ++ + S
Sbjct: 294 QIQKHPWYLGGKHEPDPCLEPAPGRRVAMRSLPSNGELDPDVLESMAS 341

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>PYRD_PSEAE (Q9HZF8) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 342

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 246 LVMRLISAKGRNAPRSSLLPPAVGLPLMRLP---PSPEGLAGGLD 121
           L + LI A GR      L P    LP+  L    P+P GLA GLD
Sbjct: 20  LSIDLIGAGGRLGLNRLLTPKPASLPVSVLGLEFPNPVGLAAGLD 64

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>COIA1_MOUSE (P39061) Collagen alpha-1(XVIII) chain precursor [Contains:|
            Endostatin]
          Length = 1774

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = -2

Query: 228  SAKGRNAPRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLERE 49
            S +G   P     PP +G    + PP P G  G    P    +  ++  P   P P    
Sbjct: 1394 SIRGPPGPPGRQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPP 1453

Query: 48   ASVGDTLGVER 16
             ++G + G  R
Sbjct: 1454 GAMGASAGQVR 1464

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>PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (Phospholipase C-beta-3) (PLC-beta-3)
          Length = 1234

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -2

Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRN--PKPLEREAS 43
           P + G+PL    PSP+ L G + + +++  + + G PD +   +PLE+  S
Sbjct: 446 PLSAGIPL----PSPQDLMGRILVKNKKRHRPSTGVPDSSVRKRPLEQSNS 492

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>TGBR3_PIG (P35054) TGF-beta receptor type III precursor (TGFR-3)|
           (Transforming growth factor beta receptor III)
           (Betaglycan)
          Length = 848

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 207 PRSSLLPPAVGLPLMRLPPSPEGLA--GGLDMP----SRRLRKGTIGQPDRNPKP 61
           P   +L     LP++  PPS EG A  GGL  P     RR R+   G  DR P+P
Sbjct: 371 PELQILLDPGALPVLDHPPSGEGAARHGGLPFPFPYIPRRGRQD--GGKDRLPRP 423

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>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -2

Query: 219 GRNAPRSSLLPPAVGLPLMRLPPSPE---GLAGGLDMPSRRLRKGTIGQPDRNPKP 61
           G+N  RS+  P A G P  + P   +   G AG    P      G  GQP  N +P
Sbjct: 194 GQNGQRSTGTPGAAGAPGPQGPVGSDGQPGSAGAPGAPGPAGAPGVDGQPGANGQP 249

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>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D) (CP4)
          Length = 374

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
 Frame = -2

Query: 219 GRNAPRSSLLPPAV-------GLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQP 79
           GR  PR     P +       GLP  R P  P+G  G    P  +  +G +G P
Sbjct: 54  GREGPRGEKGDPGLPGPMGLSGLPGPRGPVGPKGENGSAGEPGPKGERGLVGPP 107

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>PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (Phospholipase C-beta-3) (PLC-beta-3)
          Length = 1234

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 189 PPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDR--NPKPLEREAS 43
           P A G+PL    PSP+ L G + + +++  + + G PD     +PLE+  S
Sbjct: 446 PLAPGVPL----PSPQDLMGRILVKNKKRHRPSAGGPDSAGRKRPLEQSNS 492

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
 Frame = -2

Query: 234 LISAKGRNAPRSSLLPPAVGLPLMRLP------PSPEGLAGG-LDMPSRRLRKGTIGQPD 76
           L+S  G   PR  L PP  G P+  +P      P P  L GG L  P   + +      D
Sbjct: 334 LLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLD 393

Query: 75  RNPKPLE----REASVGDTLGVERR 13
           +   PL+    R+    D  G+E R
Sbjct: 394 QRGPPLDGRGGRDPRGIDARGMEAR 418

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
 Frame = -2

Query: 234 LISAKGRNAPRSSLLPPAVGLPLMRLP------PSPEGLAGG-LDMPSRRLRKGTIGQPD 76
           L+S  G   PR  L PP  G P+  +P      P P  L GG L  P   + +      D
Sbjct: 334 LLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLD 393

Query: 75  RNPKPLE----REASVGDTLGVERR 13
           +   PL+    R+    D  G+E R
Sbjct: 394 QRGPPLDGRGGRDPRGIDARGMEAR 418

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>TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand|
            and one amino acid protein 2)
          Length = 1055

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -2

Query: 207  PRSSLLPPAVGLPLMRLPPSPEGLAGGLDMPSRRLRKGTIGQPDRNPKPLEREASVGDT 31
            P   + PPA   P +  PP P    G     S   R G +     +P+PL R AS G +
Sbjct: 965  PPPGMPPPAWRQPALLAPPGPPNWLGP-PTQSGTPRGGALLLLRNSPQPLRRAASGGSS 1022


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,471,553
Number of Sequences: 219361
Number of extensions: 827761
Number of successful extensions: 3248
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 2764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3230
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result