ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl32f02 |
|---|---|
| Clone Library Name | barley_pub |
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 34.3 bits (77), Expect = 0.087 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 142 PPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 47 PP PN +PTS+ T PP P+ SIH F Sbjct: 694 PPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725
>GSH2_MOUSE (P31316) Homeobox protein GSH-2| Length = 305 Score = 29.3 bits (64), Expect = 2.8 Identities = 18/65 (27%), Positives = 22/65 (33%) Frame = -3 Query: 245 HHPGAHHAERHKHHDXXXXXXXXXXXXGPPAVHLPASAECHQSH*HMYRTTPLHAACLYQ 66 HHP HH H HH A A+A H H P+ AA Y Sbjct: 129 HHPPQHH---HHHHQPQQPGSAAAAAAAAAAAAAAAAALGHPQH-----HAPVCAATTYN 180 Query: 65 LDPPK 51 + P+ Sbjct: 181 MSDPR 185
>POXM_DROME (P23757) Paired box pox-meso protein (Paired box mesodermal| protein) Length = 402 Score = 28.5 bits (62), Expect = 4.8 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Frame = -3 Query: 236 GAHHAERHKHHDXXXXXXXXXXXXGPPAVHLPASAECHQSH*HMYRT--TPLHAACLYQL 63 G HH H HH A H+ A A H H+Y + P AA Y + Sbjct: 219 GPHHPHHHHHHQSAAAAAS--------AHHVHAHAHAHA---HLYNSIYQPYSAAAAYSM 267 Query: 62 DPP 54 P Sbjct: 268 KTP 270
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 154 PSIFPPRPNAISPT--STCTGPPRCTRP 77 P + PPRP +P +T T PPR TRP Sbjct: 159 PLMMPPRPTPPTPLPPATLTVPPRPTRP 186
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 28.5 bits (62), Expect = 4.8 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 154 PSIFPPRPNAISPT--STCTGPPRCTRP 77 P + PPRP +P +T T PPR TRP Sbjct: 193 PLMMPPRPTPPTPLPPATLTVPPRPTRP 220
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +2 Query: 59 DRADINRPRAAGWSCTCASGTDGIR 133 D +NRP G++C C G G+R Sbjct: 3213 DATCVNRPDGRGYTCRCHLGRSGVR 3237
>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -1 Query: 175 DGDEGRLPSIFPPRPNAISPTSTCTGPPRCTRP 77 DGD +PPRP I P T GP C P Sbjct: 480 DGDMRPYCWHYPPRPCGIVPARTVCGPVYCFTP 512
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -1 Query: 145 FPPRPNAISPTSTCTGPPRCTRP 77 +PPRP I P T GP C P Sbjct: 490 YPPRPCGIVPAQTVCGPVYCFTP 512
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 27.7 bits (60), Expect = 8.2 Identities = 19/66 (28%), Positives = 22/66 (33%) Frame = -3 Query: 242 HPGAHHAERHKHHDXXXXXXXXXXXXGPPAVHLPASAECHQSH*HMYRTTPLHAACLYQL 63 HP HH + H HH HL A HQ+ H PLH Q+ Sbjct: 147 HPQPHHQQNHPHHHSHS--------------HLHAHPAHHQTSPH----PPLHTGNQAQV 188 Query: 62 DPPKVQ 45 P Q Sbjct: 189 SPATQQ 194
>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6| Length = 552 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 154 PSIFPPRPNAISPTSTCTGPP 92 P+ FPP N+ PTS GPP Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 154 PSIFPPRPNAISPTSTCTGPP 92 P+ FPP N+ PTS GPP Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 154 PSIFPPRPNAISPTSTCTGPP 92 P+ FPP N+ PTS GPP Sbjct: 359 PAFFPPPTNSGMPTSDSRGPP 379
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -1 Query: 154 PSIFPPRPNAISPTSTCTGP-PRCTRP 77 P++ P PNA SPT T P P T P Sbjct: 525 PAVTTPTPNATSPTPAVTTPTPNATSP 551
>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 4391 Score = 27.7 bits (60), Expect = 8.2 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +2 Query: 59 DRADINRPRAAGWSCTCASGTDGIR 133 D +NRP G++C C G G+R Sbjct: 3896 DATCVNRPDGRGYTCRCHLGRSGLR 3920
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 27.7 bits (60), Expect = 8.2 Identities = 19/66 (28%), Positives = 22/66 (33%) Frame = -3 Query: 242 HPGAHHAERHKHHDXXXXXXXXXXXXGPPAVHLPASAECHQSH*HMYRTTPLHAACLYQL 63 HP HH + H HH HL A HQ+ H PLH Q+ Sbjct: 302 HPQPHHQQNHPHHHSHS--------------HLHAHPAHHQTSPH----PPLHTGNQAQV 343 Query: 62 DPPKVQ 45 P Q Sbjct: 344 SPATQQ 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,216,734 Number of Sequences: 219361 Number of extensions: 714616 Number of successful extensions: 2816 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2451 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2745 length of database: 80,573,946 effective HSP length: 59 effective length of database: 67,631,647 effective search space used: 1623159528 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
