ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl32h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [U... 123 2e-28
2CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [U... 119 3e-27
3CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [U... 119 4e-27
4CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [U... 118 5e-27
5CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [U... 116 2e-26
6CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic sub... 110 1e-24
7CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic sub... 102 3e-22
8CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [U... 95 8e-20
9CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [U... 69 4e-12
10CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [U... 51 1e-06
11MYRIP_MOUSE (Q8K3I4) Rab effector MyRIP (Myosin-VIIa- and Rab-in... 32 0.65
12MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-in... 31 1.5
13YL053_MIMIV (Q5UPC9) Hypothetical protein L53 30 1.9
14YAC4_SCHPO (Q09818) Putative general negative regulator of trans... 30 3.2
15MAT1_MARGL (P51950) CDK-activating kinase assembly factor MAT1 (... 30 3.2
16JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone dem... 30 3.2
17RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-)... 29 4.2
18RNF4_HUMAN (P78317) RING finger protein 4 29 4.2
19RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger... 29 5.5
20JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation ... 29 5.5
21RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger p... 29 5.5
22RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger... 29 5.5
23RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger... 29 5.5
24RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-)... 29 5.5
25JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylatio... 29 5.5
26RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.... 29 5.5
27RNF4_MOUSE (Q9QZS2) RING finger protein 4 29 5.5
28JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylatio... 29 5.5
29RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.... 29 5.5
30RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.... 29 5.5
31MAT1_MOUSE (P51949) CDK-activating kinase assembly factor MAT1 (... 28 7.2
32MAT1_HUMAN (P51948) CDK-activating kinase assembly factor MAT1 (... 28 7.2
33RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-)... 28 7.2
34RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)... 28 7.2
35RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-)... 28 7.2
36RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)... 28 7.2
37SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) ... 28 7.2
38RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (... 28 7.2
39CAH3_HUMAN (P07451) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic ... 28 7.2
40SYH_DEHE1 (Q3ZAI8) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 28 9.4
41TNR14_HUMAN (Q92956) Tumor necrosis factor receptor superfamily ... 28 9.4
42CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (E... 28 9.4
43CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (E... 28 9.4
44JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone dem... 28 9.4

>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-7) (Irregular xylem protein 3)
           (AtIRX3)
          Length = 1026

 Score =  123 bits (308), Expect = 2e-28
 Identities = 59/91 (64%), Positives = 63/91 (69%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           LVAGSHNRNELVVI    EP  +PLK  +   C+IC            FVACNEC FP C
Sbjct: 7   LVAGSHNRNELVVIHNHEEP--KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPAC 64

Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           R CYEYERREGTQNCPQCKTRYKRL+G  RV
Sbjct: 65  RPCYEYERREGTQNCPQCKTRYKRLRGSPRV 95



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>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-5)
          Length = 1069

 Score =  119 bits (298), Expect = 3e-27
 Identities = 54/91 (59%), Positives = 62/91 (68%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R +++ +   CQIC            FVACNECAFPVC
Sbjct: 7   LIAGSHNRNEFVLINADESARIRSVEELSGQTCQICGDEIELSVDGESFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           R CYEYERREG Q+CPQCKTRYKR+KG  RV
Sbjct: 67  RPCYEYERREGNQSCPQCKTRYKRIKGSPRV 97



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>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
           (AtRSW1)
          Length = 1081

 Score =  119 bits (297), Expect = 4e-27
 Identities = 54/91 (59%), Positives = 63/91 (69%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           LVAGS+ RNELV IR + + G +PLK  N   CQIC            FVACNECAFPVC
Sbjct: 7   LVAGSYRRNELVRIRHESDGGTKPLKNMNGQICQICGDDVGLAETGDVFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           R CYEYER++GTQ CPQCKTR++R +G  RV
Sbjct: 67  RPCYEYERKDGTQCCPQCKTRFRRHRGSPRV 97



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>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score =  118 bits (296), Expect = 5e-27
 Identities = 54/91 (59%), Positives = 61/91 (67%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R +++ +   CQIC            FVACNECAFPVC
Sbjct: 7   LIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           R CYEYERREG Q CPQCKTRYKR+KG  RV
Sbjct: 67  RPCYEYERREGNQACPQCKTRYKRIKGSPRV 97



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>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
           (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score =  116 bits (291), Expect = 2e-26
 Identities = 54/91 (59%), Positives = 61/91 (67%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R +++ +   CQIC            FVACNECAFPVC
Sbjct: 7   LIAGSHNRNEFVLINADENARIRSVQELSGQTCQICRDEIELTVDGEPFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           R CYEYERREG Q CPQCKTR+KRLKG  RV
Sbjct: 67  RPCYEYERREGNQACPQCKTRFKRLKGSPRV 97



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>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score =  110 bits (275), Expect = 1e-24
 Identities = 50/91 (54%), Positives = 58/91 (63%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R  ++ +   C+IC            F+ACNECAFP C
Sbjct: 7   LIAGSHNRNEFVLINADDTARIRSAEELSGQTCKICRDEIELTDNGEPFIACNECAFPTC 66

Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           R CYEYERREG Q CPQC TRYKR+KG  RV
Sbjct: 67  RPCYEYERREGNQACPQCGTRYKRIKGSPRV 97



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>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score =  102 bits (255), Expect = 3e-22
 Identities = 46/91 (50%), Positives = 57/91 (62%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           +VAGS+ R E V  R D + G +PLK  N   CQIC            FVACNEC FP+C
Sbjct: 1   MVAGSYRRYEFVRNRDDSDDGLKPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFPLC 60

Query: 336 RDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           + CYEYER++G+Q CPQCK R++R  G  RV
Sbjct: 61  QSCYEYERKDGSQCCPQCKARFRRHNGSPRV 91



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>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
           protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score = 94.7 bits (234), Expect = 8e-20
 Identities = 40/76 (52%), Positives = 49/76 (64%)
 Frame = +3

Query: 204 DGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCP 383
           +GE   +P+K      CQIC            FVAC+ C+FPVCR CYEYER++G Q+CP
Sbjct: 4   EGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCP 63

Query: 384 QCKTRYKRLKGCARVP 431
           QCKTRYKRLKG   +P
Sbjct: 64  QCKTRYKRLKGSPAIP 79



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>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-4) (Irregular xylem protein 5)
           (AtIRX5)
          Length = 1049

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 27/59 (45%), Positives = 35/59 (59%)
 Frame = +3

Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           C++C            FVAC+ C +PVC+ CYEYER  G + CPQC T YKR KG  ++
Sbjct: 23  CKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQCNTLYKRHKGSPKI 81



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>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-8) (Irregular xylem protein 1)
           (AtIRX1)
          Length = 985

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKTRY 401
           C  C            FVAC+EC+FP+C+ C EYE +EG + C +C   Y
Sbjct: 9   CNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRCGNPY 58



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>MYRIP_MOUSE (Q8K3I4) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting|
           protein) (Exophilin-8) (Slp homolog lacking C2 domains
           c)
          Length = 856

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQCK 392
           C EC F VC+ C  Y++ E    C  C+
Sbjct: 81  CGECKFSVCKSCCSYQKHEKLWVCCVCQ 108



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>MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting|
           protein) (Exophilin-8) (Slp homolog lacking C2 domains
           c)
          Length = 859

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQCK 392
           C +C F VC+ C  Y++ E    C  C+
Sbjct: 81  CGDCKFNVCKSCCSYQKHEKAWVCCVCQ 108



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>YL053_MIMIV (Q5UPC9) Hypothetical protein L53|
          Length = 100

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +3

Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKTRYKRLK 413
           C+IC            F++C E   PV   CYE      T  C  CK   K  K
Sbjct: 7   CKICCASAKKCCDEPVFISCREKCEPVIYKCYEICEPVCTPVCKPCKPICKPCK 60



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>YAC4_SCHPO (Q09818) Putative general negative regulator of transcription|
           C16C9.04c
          Length = 489

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTRY 401
           +C + VCR C+ + + +    CP C+  Y
Sbjct: 36  QCGYRVCRFCWHHIKEDLNGRCPACRRLY 64



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>MAT1_MARGL (P51950) CDK-activating kinase assembly factor MAT1 (RING finger|
           protein MAT1) (Menage a trois) (CDK7/cyclin H assembly
           factor)
          Length = 324

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 312 NECAFPVCRDCYEYERREGTQNCPQCKTRYKR 407
           N C   +C +C E     G+ +CP C T  +R
Sbjct: 25  NVCGHTLCENCVEILFVRGSGSCPSCNTPLRR 56



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>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C) (Thyroid receptor-interacting protein 8)
            (TRIP-8)
          Length = 2540

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 309  CNECAFPVCRDCYEYERREGTQN 377
            C +C F VC DCY+ + R+ +++
Sbjct: 1860 CQKCGFVVCLDCYKAKERKSSRD 1882



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>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)|
           (dRING protein) (Sex comb extra protein)
          Length = 435

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 17/69 (24%), Positives = 22/69 (31%)
 Frame = +3

Query: 192 VIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGT 371
           VI    E    P    +   C IC             +   EC    C DC     R G 
Sbjct: 26  VITDSTEIAVSPRSLHSELMCPICLDMLKKT------MTTKECLHRFCSDCIVTALRSGN 79

Query: 372 QNCPQCKTR 398
           + CP C+ +
Sbjct: 80  KECPTCRKK 88



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>RNF4_HUMAN (P78317) RING finger protein 4|
          Length = 190

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 14/67 (20%), Positives = 22/67 (32%)
 Frame = +3

Query: 198 RRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQN 377
           R   + GA  L+     +C IC             +   EC    C  C   +  +    
Sbjct: 114 RNARDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANT 172

Query: 378 CPQCKTR 398
           CP C+ +
Sbjct: 173 CPTCRKK 179



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>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 377

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 34  ECLHRFCSDCIVTALRSGNKECPTCRKK 61



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>JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation protein 2A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A)
           (Testis-specific gene A protein) (Zinc-finger protein
           TSGA)
          Length = 1214

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386
           C  C F VC DCY  +R+    NC Q
Sbjct: 560 CPRCGFGVCVDCYRLKRK----NCQQ 581



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>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKK 90



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>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)|
           (Transcription repressor Ring1A)
          Length = 406

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKK 90



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>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKK 90



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>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger|
           protein 1) (RING1a)
          Length = 406

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKK 90



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>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1323

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386
           C  C F VC DCY  +R+    NC Q
Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697



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>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger|
           protein 2-B) (RING finger protein 1B-B) (RING1b-B)
          Length = 343

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 62  ECLHRFCSDCIVTALRSGNKECPTCRKK 89



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>RNF4_MOUSE (Q9QZS2) RING finger protein 4|
          Length = 194

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/65 (23%), Positives = 21/65 (32%)
 Frame = +3

Query: 204 DGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCP 383
           DG  G RP       +C IC             +   EC    C  C   +  +    CP
Sbjct: 123 DGATGPRP---SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCP 178

Query: 384 QCKTR 398
            C+ +
Sbjct: 179 TCRKK 183



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>JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylation protein 2A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1321

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386
           C  C F VC DCY  +R+    NC Q
Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697



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>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)|
          Length = 1195

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 318  CAFPVCRDCYEYERREGTQNCPQC 389
            C  P C     Y+RR+GT  CP C
Sbjct: 1135 CGNPSCGHIAIYDRRKGTLRCPVC 1158



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>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger|
           protein 2-A) (RING finger protein 1B-A) (RING1b-A)
          Length = 344

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKK 90



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>MAT1_MOUSE (P51949) CDK-activating kinase assembly factor MAT1 (RING finger|
           protein MAT1) (Menage a trois) (CDK7/cyclin H assembly
           factor) (p36) (p35)
          Length = 309

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 312 NECAFPVCRDCYEYERREGTQNCPQCKTRYKR 407
           N C   +C  C +     G  NCP+C T  ++
Sbjct: 24  NVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55



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>MAT1_HUMAN (P51948) CDK-activating kinase assembly factor MAT1 (RING finger|
           protein MAT1) (Menage a trois) (CDK7/cyclin H assembly
           factor) (p36) (p35) (Cyclin G1-interacting protein)
           (RING finger protein 66)
          Length = 309

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 312 NECAFPVCRDCYEYERREGTQNCPQCKTRYKR 407
           N C   +C  C +     G  NCP+C T  ++
Sbjct: 24  NVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55



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>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKK 93



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>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKK 93



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>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b) (RING
           finger protein BAP-1) (DinG protein)
           (Huntingtin-interacting protein 2-interacting protein 3)
           (HIP2-interacting protein 3)
          Length = 336

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKK 93



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>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKK 93



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>SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)|
          Length = 671

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = +3

Query: 177 RNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYE 356
           +NEL+ I+R G    R  +  +   C  C               C  C   VCRDC   +
Sbjct: 40  KNELLEIKRKG--AKRGSQHYSDRTCARCQESLGRLSPKTN--TCRGCNHLVCRDC-RIQ 94

Query: 357 RREGTQNCPQC 389
              GT  C  C
Sbjct: 95  ESNGTWRCKVC 105



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>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 308

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTR 398
           EC    C DC     R G + CP C+ +
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKK 93



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>CAH3_HUMAN (P07451) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)|
           (Carbonate dehydratase III) (CA-III)
          Length = 259

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 318 CAFPVCRDCYEYERREGTQNCPQC 389
           C FP CRD + Y+    T  C +C
Sbjct: 181 CLFPACRDYWTYQGSFTTPPCEEC 204



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>SYH_DEHE1 (Q3ZAI8) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 418

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           +C    C+   E   R     CP C   Y RLK C  V
Sbjct: 206 DCKREECQCVAENAPRSADYLCPDCLAHYNRLKECLTV 243



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>TNR14_HUMAN (Q92956) Tumor necrosis factor receptor superfamily member 14|
           precursor (Herpesvirus entry mediator A) (Tumor necrosis
           factor receptor-like 2) (TR2)
          Length = 283

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 318 CAFPVCRDCYEYERREGTQNCPQCKTRYKRLKGCARV 428
           C  P    C E E   G++ CP+C   Y+  + C  +
Sbjct: 34  CYAPALPSCKEDEYPVGSECCPKCSPGYRVKEACGEL 70



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>CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3|
           ubiquitin protein ligase CNOT4) (CCR4-associated factor
           4) (Potential transcriptional repressor NOT4Hp)
          Length = 575

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 300 FVACNECAFPVCRDCYEYERREGTQNCPQCKTRY 401
           F  C  C + +CR C+   R +    CP C+  Y
Sbjct: 28  FFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 60



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>CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3|
           ubiquitin protein ligase CNOT4) (CCR4-associated factor
           4) (Potential transcriptional repressor NOT4Hp)
          Length = 575

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 300 FVACNECAFPVCRDCYEYERREGTQNCPQCKTRY 401
           F  C  C + +CR C+   R +    CP C+  Y
Sbjct: 28  FFPCT-CGYQICRFCWHRIRTDENGLCPACRKPY 60



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>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C)
          Length = 2350

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 309  CNECAFPVCRDCYEYERREGTQN 377
            C +C F  C DCY+ + R+ +++
Sbjct: 1671 CRKCGFVACLDCYKAKERKSSRD 1693


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,858,801
Number of Sequences: 219361
Number of extensions: 355424
Number of successful extensions: 1342
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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