ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl33a04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 252 bits (127), Expect = 9e-64 Identities = 187/207 (90%) Strand = Plus / Plus Query: 87 atgggtttcgataatgaatgtattctgaatatacaaactcttcctggtgaatatttttgc 146 ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct: 2720860 atgggtttcgataatgagtgtgttctgaatattcaaactcttcctggtgaatatttctgt 2720919 Query: 147 cctgtttgtcggacactcatataccccaacgaagctctgcaagctcagtgcacacatctc 206 |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 2720920 cctgtttgtcggacgctcatatgtcccaacgaagctctgcaaactcagtgcacacatctc 2720979 Query: 207 tactgcaaaccttgcttggcttatgtagcagcaaccacacaagcctgcccttatgatggt 266 ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| Sbjct: 2720980 tactgcaaaccctgcttggcttacatagtggcaacaacacaagcctgcccttatgatggc 2721039 Query: 267 tacttagtgacggaagctgattccaag 293 || || || || ||||||||||||||| Sbjct: 2721040 tatttggttacagaagctgattccaag 2721066 Score = 174 bits (88), Expect = 2e-40 Identities = 157/180 (87%) Strand = Plus / Plus Query: 292 agcctctggtggattcaaataaatcacttgctgagacaattggtaaagttacagtacaat 351 |||||||| |||| ||||||||| | ||||||||||||||||||||||||||||| || | Sbjct: 2721167 agcctctgatggaatcaaataaaccccttgctgagacaattggtaaagttacagtccact 2721226 Query: 352 gcctgtacaacaagagtggttgccaatggcaaggaaacctgtctgaatgcaacacacatg 411 | | ||| ||||||||||||| |||||||| || || |||||||| |||| |||||||| Sbjct: 2721227 gtcagtatcacaagagtggttgtcaatggcatggtaatctgtctgactgcatcacacatg 2721286 Query: 412 gtaccgcttgcgcctatgggaactcgcctgttgtttgtaaccgttgtggtactcagattg 471 |||| |||| |||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 2721287 gtactacttgtgcctatgggaactctcctgtagtttgtaaccgttgcagtactcagattg 2721346
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 252 bits (127), Expect = 9e-64 Identities = 187/207 (90%) Strand = Plus / Plus Query: 87 atgggtttcgataatgaatgtattctgaatatacaaactcttcctggtgaatatttttgc 146 ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct: 2720804 atgggtttcgataatgagtgtgttctgaatattcaaactcttcctggtgaatatttctgt 2720863 Query: 147 cctgtttgtcggacactcatataccccaacgaagctctgcaagctcagtgcacacatctc 206 |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 2720864 cctgtttgtcggacgctcatatgtcccaacgaagctctgcaaactcagtgcacacatctc 2720923 Query: 207 tactgcaaaccttgcttggcttatgtagcagcaaccacacaagcctgcccttatgatggt 266 ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| Sbjct: 2720924 tactgcaaaccctgcttggcttacatagtggcaacaacacaagcctgcccttatgatggc 2720983 Query: 267 tacttagtgacggaagctgattccaag 293 || || || || ||||||||||||||| Sbjct: 2720984 tatttggttacagaagctgattccaag 2721010 Score = 174 bits (88), Expect = 2e-40 Identities = 157/180 (87%) Strand = Plus / Plus Query: 292 agcctctggtggattcaaataaatcacttgctgagacaattggtaaagttacagtacaat 351 |||||||| |||| ||||||||| | ||||||||||||||||||||||||||||| || | Sbjct: 2721111 agcctctgatggaatcaaataaaccccttgctgagacaattggtaaagttacagtccact 2721170 Query: 352 gcctgtacaacaagagtggttgccaatggcaaggaaacctgtctgaatgcaacacacatg 411 | | ||| ||||||||||||| |||||||| || || |||||||| |||| |||||||| Sbjct: 2721171 gtcagtatcacaagagtggttgtcaatggcatggtaatctgtctgactgcatcacacatg 2721230 Query: 412 gtaccgcttgcgcctatgggaactcgcctgttgtttgtaaccgttgtggtactcagattg 471 |||| |||| |||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 2721231 gtactacttgtgcctatgggaactctcctgtagtttgtaaccgttgcagtactcagattg 2721290
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 252 bits (127), Expect = 9e-64 Identities = 187/207 (90%) Strand = Plus / Plus Query: 87 atgggtttcgataatgaatgtattctgaatatacaaactcttcctggtgaatatttttgc 146 ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct: 89786 atgggtttcgataatgagtgtgttctgaatattcaaactcttcctggtgaatatttctgt 89845 Query: 147 cctgtttgtcggacactcatataccccaacgaagctctgcaagctcagtgcacacatctc 206 |||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 89846 cctgtttgtcggacgctcatatgtcccaacgaagctctgcaaactcagtgcacacatctc 89905 Query: 207 tactgcaaaccttgcttggcttatgtagcagcaaccacacaagcctgcccttatgatggt 266 ||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| Sbjct: 89906 tactgcaaaccctgcttggcttacatagtggcaacaacacaagcctgcccttatgatggc 89965 Query: 267 tacttagtgacggaagctgattccaag 293 || || || || ||||||||||||||| Sbjct: 89966 tatttggttacagaagctgattccaag 89992 Score = 174 bits (88), Expect = 2e-40 Identities = 157/180 (87%) Strand = Plus / Plus Query: 292 agcctctggtggattcaaataaatcacttgctgagacaattggtaaagttacagtacaat 351 |||||||| |||| ||||||||| | ||||||||||||||||||||||||||||| || | Sbjct: 90093 agcctctgatggaatcaaataaaccccttgctgagacaattggtaaagttacagtccact 90152 Query: 352 gcctgtacaacaagagtggttgccaatggcaaggaaacctgtctgaatgcaacacacatg 411 | | ||| ||||||||||||| |||||||| || || |||||||| |||| |||||||| Sbjct: 90153 gtcagtatcacaagagtggttgtcaatggcatggtaatctgtctgactgcatcacacatg 90212 Query: 412 gtaccgcttgcgcctatgggaactcgcctgttgtttgtaaccgttgtggtactcagattg 471 |||| |||| |||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 90213 gtactacttgtgcctatgggaactctcctgtagtttgtaaccgttgcagtactcagattg 90272
>gb|AC011296.3| Homo sapiens BAC clone RP11-96K1 from 7, complete sequence Length = 130513 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 tattctggtgaggctgtcctgg 34 |||||||||||||||||||||| Sbjct: 5861 tattctggtgaggctgtcctgg 5840
>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence Length = 195169 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 133 gtgaatatttttgccctgtttg 154 |||||||||||||||||||||| Sbjct: 91262 gtgaatatttttgccctgtttg 91241
>gb|AC129222.4| Mus musculus BAC clone RP24-532L14 from 14, complete sequence Length = 181469 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 96 gataatgaatgtattctgaatataca 121 |||||||||||||| ||||||||||| Sbjct: 115198 gataatgaatgtatcctgaatataca 115223
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 307 caaataaatcacttgctgaga 327 ||||||||||||||||||||| Sbjct: 1021978 caaataaatcacttgctgaga 1021958
>gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosome 8, complete sequence Length = 220224 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ctctgcaagctcagtgcacac 201 ||||||||||||||||||||| Sbjct: 85399 ctctgcaagctcagtgcacac 85379
>gb|AC127165.4| Homo sapiens 12 BAC RP11-240I8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97473 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 125 tcttcctggtgaatatttttgccctgttt 153 |||||||| | |||||||||||||||||| Sbjct: 7798 tcttcctgtttaatatttttgccctgttt 7770
>gb|AC134525.5| Mus musculus BAC clone RP24-496F7 from 8, complete sequence Length = 215900 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ctctgcaagctcagtgcacac 201 ||||||||||||||||||||| Sbjct: 189487 ctctgcaagctcagtgcacac 189467
>gb|AC122258.4| Mus musculus BAC clone RP23-182F18 from 7, complete sequence Length = 186441 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 aacccttactggatagaagttagt 75 ||||||||||||| |||||||||| Sbjct: 19583 aacccttactggacagaagttagt 19560
>emb|Z98598.1|SPAC1B3 S.pombe chromosome I cosmid c1B3 Length = 42149 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 aattggtaaagttacagtacaatg 352 |||||||| ||||||||||||||| Sbjct: 31859 aattggtagagttacagtacaatg 31882
>gb|AC157606.5| Mus musculus chromosome 7, clone RP23-466J2, complete sequence Length = 174676 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 aacccttactggatagaagttagt 75 ||||||||||||| |||||||||| Sbjct: 135522 aacccttactggacagaagttagt 135499
>gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, complete sequence Length = 149173 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 cagcaaccacacaagcctgc 254 |||||||||||||||||||| Sbjct: 92980 cagcaaccacacaagcctgc 92961
>dbj|AP006506.1| Mus musculus genomic DNA, chromosome 4, clone: RP23-284M8, complete sequence Length = 255195 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 ggaactcgcctgttgtttgt 449 |||||||||||||||||||| Sbjct: 160180 ggaactcgcctgttgtttgt 160161
>gb|AF107563.1|MUSPEX1 Mus musculus Cast (Cast) and peroxisomal membrane anchor protein (Pex14) genes, partial sequence Length = 53094 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ggaactcgcctgttgtttgt 449 |||||||||||||||||||| Sbjct: 34708 ggaactcgcctgttgtttgt 34727
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 acaagcctgcccttatgatg 264 |||||||||||||||||||| Sbjct: 2106527 acaagcctgcccttatgatg 2106546
>emb|BX950195.14| Zebrafish DNA sequence from clone CH211-232M10 in linkage group 19, complete sequence Length = 149624 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aatgaatgtattctgaatat 118 |||||||||||||||||||| Sbjct: 117822 aatgaatgtattctgaatat 117803
>dbj|AP003777.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-249I1, complete sequence Length = 173223 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 attccaagcctctggtggattcaaataa 313 ||||||||||||||||||| | |||||| Sbjct: 161137 attccaagcctctggtggacttaaataa 161164
>dbj|AP003066.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-360K13, complete sequence Length = 187688 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 attccaagcctctggtggattcaaataa 313 ||||||||||||||||||| | |||||| Sbjct: 146593 attccaagcctctggtggacttaaataa 146620
>emb|AL611967.21| Mouse DNA sequence from clone RP23-121D17 on chromosome 4, complete sequence Length = 173824 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ggaactcgcctgttgtttgt 449 |||||||||||||||||||| Sbjct: 7750 ggaactcgcctgttgtttgt 7769 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,348,858 Number of Sequences: 3902068 Number of extensions: 4348858 Number of successful extensions: 77723 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77605 Number of HSP's gapped (non-prelim): 118 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
