ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl38d02 |
|---|---|
| Clone Library Name | barley_pub |
>RPA2_PONPY (Q5REE8) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1136 Score = 45.4 bits (106), Expect = 6e-05 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = +1 Query: 157 EEDYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPM 336 E+ A L+EL R H+ESF+Y + EGL + +I P E + + L+ P + Sbjct: 29 EQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTI-LDAVISPPTV 87 Query: 337 KDGRLGQ--PLYPQECRQGRISYSGEFKVE 420 G + + +YP ECR R +Y G+ + Sbjct: 88 PKGTICKEVSVYPAECRGRRCTYRGKLTAD 117
>RPA2_RAT (O54888) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) (RNA polymerase I 127 kDa subunit) Length = 1135 Score = 45.1 bits (105), Expect = 8e-05 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Frame = +1 Query: 157 EEDYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPM 336 E+ A L++L R H++SF+Y + EGL + +I P E +L + ++ P + Sbjct: 29 EQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTI-VDAAISPPAV 87 Query: 337 KDGRLGQPL--YPQECRQGRISYSGEFKVE 420 G + + L YP ECR R +Y G+ + Sbjct: 88 PKGTICKELNIYPAECRGRRSTYRGKLTAD 117
>RPA2_HUMAN (Q9H9Y6) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 45.1 bits (105), Expect = 8e-05 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = +1 Query: 157 EEDYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPM 336 E+ A L+EL R H+ESF+Y + EGL + +I P E + + L+ P + Sbjct: 29 EQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTI-LDAVISPPTV 87 Query: 337 KDGRLGQP--LYPQECRQGRISYSGEFKVE 420 G + + +YP ECR R +Y G+ + Sbjct: 88 PKGTICKEANVYPAECRGRRSTYRGKLTAD 117
>RPA2_MOUSE (P70700) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 42.4 bits (98), Expect = 5e-04 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Frame = +1 Query: 157 EEDYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPP- 333 E+ A L++L R H++SF+Y EGL + +I P E +L ++ + PP Sbjct: 29 EQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISL--TIVDAVISPPS 86 Query: 334 MKDGRLGQPL--YPQECRQGRISYSGEFKVE 420 + G + + L YP ECR + +Y G + Sbjct: 87 VPKGTICKDLNVYPAECRGRKSTYRGRLTAD 117
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 37.7 bits (86), Expect = 0.013 Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 16/106 (15%) Frame = +1 Query: 166 YATLRELYRPHIESFD-YFLDEG----LDKMLLSIRPM------EITHPSSNTTLRM--- 303 Y L+ PHIESF+ F D+G LD L I E P L + Sbjct: 36 YPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERADPQGKNKLTIRYK 95 Query: 304 --SLEKGHVLPPMKDGRLGQPLYPQECRQGRISYSGEFKVEAVFQF 435 L+K V PP + ++P ECR+ +SY G K+ A F++ Sbjct: 96 SIELQKSQV-PPTNRWAKNREIFPAECRERHVSYRG--KLSATFEY 138
>RPOB_BACSU (P37870) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 37.0 bits (84), Expect = 0.022 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + T +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE------DFTGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P YP +E ++ ++YS +V+ Sbjct: 73 EPKYPVEESKERDVTYSAPLRVK 95
>RPOB_BACLD (Q65PB5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1193 Score = 37.0 bits (84), Expect = 0.022 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + T +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE------DFTGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P YP +E ++ ++YS +V+ Sbjct: 73 EPKYPVEESKERDVTYSAPLRVK 95
>RPOB_BACHK (Q6HPR6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 35.8 bits (81), Expect = 0.049 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + T +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE------DFTGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y EC++ ++Y+ +V+ Sbjct: 73 EPKYSVDECKERDVTYAAPLRVK 95
>RPOB_BACCZ (Q63H98) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 35.8 bits (81), Expect = 0.049 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + T +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE------DFTGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y EC++ ++Y+ +V+ Sbjct: 73 EPKYSVDECKERDVTYAAPLRVK 95
>RPOB_BACCR (Q81J48) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 35.8 bits (81), Expect = 0.049 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + T +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE------DFTGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y EC++ ++Y+ +V+ Sbjct: 73 EPKYSVDECKERDVTYAAPLRVK 95
>RPOB_BACC1 (Q73FA4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 35.8 bits (81), Expect = 0.049 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + T +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE------DFTGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y EC++ ++Y+ +V+ Sbjct: 73 EPKYSVDECKERDVTYAAPLRVK 95
>RPOB_BACAN (Q81VT8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1177 Score = 35.8 bits (81), Expect = 0.049 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + T +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFQDISPIE------DFTGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y EC++ ++Y+ +V+ Sbjct: 73 EPKYSVDECKERDVTYAAPLRVK 95
>RPOB_OCEIH (Q8ETY8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1179 Score = 35.4 bits (80), Expect = 0.065 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +1 Query: 205 SFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLGQPLYP-QECR 381 S+D+FL+EGL +M I P+E + T +SLE D LG P YP E + Sbjct: 36 SYDWFLEEGLREMFQDISPIE------DFTGNLSLE-------FVDYSLGDPKYPVDEAK 82 Query: 382 QGRISYSGEFKVE 420 + ++Y+ +V+ Sbjct: 83 ERDVTYNAPLRVK 95
>RPA2_DROME (P20028) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1129 Score = 34.7 bits (78), Expect = 0.11 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPP-----MK 339 L L PH++SFD L GLD + P P+ + M +E + P + Sbjct: 32 LANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGE-KISMKVESIWIAKPKVPQDVI 90 Query: 340 DGRLGQPLYPQECRQGRISYSG 405 D R + +YP + RQ +SYSG Sbjct: 91 DVRT-REIYPTDSRQLHVSYSG 111
>RPOB_STAS1 (Q49V52) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 34.7 bits (78), Expect = 0.11 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+D+FL+EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYDWFLEEGLLEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +YS +V+ Sbjct: 73 EPKYDLEESKNRDTTYSAPLRVK 95
>RPOB_CARHZ (Q3A9Q7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1132 Score = 33.1 bits (74), Expect = 0.32 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = +1 Query: 202 ESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLGQPLYP-QEC 378 +S+ +FLDEGL ++ I P+ ++ T +SLE D LG+P Y +EC Sbjct: 32 KSYQWFLDEGLREVFREISPI------TDFTGNLSLE-------FLDYYLGKPKYSVEEC 78 Query: 379 RQGRISYSGEFKVE 420 ++ +YS +V+ Sbjct: 79 KERDFTYSAPLRVK 92
>RPOB_STAHJ (Q4L3K3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 32.3 bits (72), Expect = 0.55 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+D+FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYDWFLKEGLLEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAES (Q8CQ84) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 32.3 bits (72), Expect = 0.55 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+D+FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYDWFLKEGLLEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAEQ (Q5HRL0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 32.3 bits (72), Expect = 0.55 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+D+FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYDWFLKEGLLEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_THECE (P31814) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1122 Score = 32.0 bits (71), Expect = 0.71 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = +1 Query: 160 EDYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMK 339 E Y + L R H++S++ F+D G+ +++ ++ P + K + P Sbjct: 21 EAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPDIPD----FEVKFGKVRLGEPEF 76 Query: 340 DGRLGQ--PLYPQECRQGRISYSGEFKVEAV 426 GQ PLYP + R ++YS +E + Sbjct: 77 QEAQGQRKPLYPMDARIRNLTYSAPIYLELI 107
>RPOB_GEOKA (Q5L405) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1190 Score = 31.6 bits (70), Expect = 0.93 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L S+ +FLDEGL +M I P+E + + +SLE D LG Sbjct: 26 LPNLIEIQTSSYQWFLDEGLREMFREISPIE------DFSGNLSLE-------FIDYSLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E ++ ++Y+ +V+ Sbjct: 73 EPKYTVEEAKERDVTYAAPLRVK 95
>RPOB_BACHD (Q9Z9M2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1180 Score = 31.6 bits (70), Expect = 0.93 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +1 Query: 205 SFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLGQPLYP-QECR 381 S+ +FLDEGL +M I P++ G+++ D LG+P YP E + Sbjct: 36 SYQWFLDEGLREMFQDISPIQDF-------------TGNLVLEFIDYSLGEPKYPVDESK 82 Query: 382 QGRISYSGEFKVE 420 + ++Y+ +V+ Sbjct: 83 ERDVTYAAPLRVK 95
>RPA2_YEAST (P22138) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (A135) (RNA polymerase I subunit 2) Length = 1203 Score = 31.6 bits (70), Expect = 0.93 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 22/103 (21%) Frame = +1 Query: 166 YATLRELYRPHIESFDYFLDEGLDKMLLSI-------------RPMEITHPSSNT----- 291 + L+E +PHI SF+ L EG D LL++ +P+ SN+ Sbjct: 35 FPLLQEAVQPHIGSFNA-LTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEDEISNSGYLGN 93 Query: 292 TLRMSLEKGHVLPPMKDGRLG----QPLYPQECRQGRISYSGE 408 L +S+E+ + PM + + + +YP E RQ SY G+ Sbjct: 94 KLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGK 136
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = +1 Query: 166 YATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDG 345 + ++ L + HI+SF+YF++ + K++ + ++T + L LP +++ Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMKANE--KVTSDADPMWYLKYLNIYVGLPDVEES 90 Query: 346 -RLGQPLYPQECRQGRISYSGEFKVE 420 + +P+ P ECR ++YS V+ Sbjct: 91 FNVTRPVSPHECRLRDMTYSAPITVD 116
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Frame = +1 Query: 166 YATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDG 345 + ++ L + HI+SF+YF++ + K++ + ++T + L LP +++ Sbjct: 33 FLKVKGLVKQHIDSFNYFINVEIKKIMKANE--KVTSDADPMWYLKYLNIYVGLPDVEES 90 Query: 346 -RLGQPLYPQECRQGRISYSGEFKVE 420 + +P+ P ECR ++YS V+ Sbjct: 91 FNVTRPVSPHECRLRDMTYSAPITVD 116
>RPA2_EUPOC (P28365) DNA-directed RNA polymerase I second largest subunit (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1166 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%) Frame = +1 Query: 178 RELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDG-RLG 354 + + R HI+SFD+ + L++ + P + P + + L D LG Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKK-----LTLWYDSFELG 71 Query: 355 QP-----------LYPQECRQGRISYS 402 QP LYP ECRQ +++Y+ Sbjct: 72 QPSLGEIDYDSHILYPSECRQRKMTYT 98
>RPOB_STAAU (P47768) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1182 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+++FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAAW (P60279) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+++FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAAS (Q6GBU5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+++FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAAR (Q6GJC6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+++FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAAN (P60278) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+++FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAAM (Q932F8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+++FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_STAAC (Q5HID3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1183 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L L +S+++FL EGL +M I P+E + T +SLE D RLG Sbjct: 26 LPNLIEIQTKSYEWFLREGLIEMFRDISPIE------DFTGNLSLE-------FVDYRLG 72 Query: 355 QPLYP-QECRQGRISYSGEFKVE 420 +P Y +E + +Y+ +V+ Sbjct: 73 EPKYDLEESKNRDATYAAPLRVK 95
>RPOB_SYMTH (Q67JT3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1250 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 205 SFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLGQPLYP-QECR 381 S+ +FL EGL +M I P++ G+++ D LG+P Y +EC+ Sbjct: 34 SYQWFLREGLQEMFQDISPIQDF-------------TGNLVLEFIDYSLGEPKYSIEECK 80 Query: 382 QGRISYSGEFKV 417 + ++Y+ +V Sbjct: 81 ERDVTYAAPLRV 92
>RPOB_BACSK (Q5WLS0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1180 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +1 Query: 205 SFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLGQPLYP-QECR 381 S+ +FLDEGL +M I P++ G+++ D LG+P YP E + Sbjct: 36 SYQWFLDEGLREMFQDISPIQDF-------------TGNLVLEFIDYSLGEPKYPVDESK 82 Query: 382 QGRISYSGEFKVE 420 + ++++ +V+ Sbjct: 83 ERDVTFAAPLRVK 95
>RPOB2_HALSA (P15352) DNA-directed RNA polymerase subunit B'' (EC 2.7.7.6)| Length = 523 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Frame = +1 Query: 160 EDYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHV---LP 330 E Y + L H S++ FL+ G+ ++ +E + +E G V P Sbjct: 11 ESYFSKERLAEHHFRSYNAFLEHGMQDVVTEKERIETDIGDKEDEEPVWVELGDVRAVTP 70 Query: 331 PMKDGRLGQPL-YPQECRQGRISYSGEFKVE 420 +++ + L YPQE R I+YS +E Sbjct: 71 RVREADGSEELLYPQEARLRNITYSAPVFME 101
>LAD1_MOUSE (P57016) Ladinin 1 (Lad-1) (Linear IgA disease autoantigen)| Length = 528 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +1 Query: 7 GSTLPAESPHAAATRRSPAPSCHTLAHRIPPTDMQM 114 G LP +SP ++A + +PAP T A R PP +Q+ Sbjct: 321 GRALPDKSPPSSAEQSTPAPP--TKASRFPPITLQV 354
>RPOB2_METTH (O27123) DNA-directed RNA polymerase subunit B'' (EC 2.7.7.6)| Length = 519 Score = 29.3 bits (64), Expect = 4.6 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +1 Query: 181 ELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNT-TLRMSLEKGHVLPPMKDGRLGQ 357 +L HI S++ F+ + +++ + P+E+ T ++S+EK + DG + Sbjct: 23 DLVDHHIHSYNDFVSNRIQEIIDTSEPIELEQGKYRVETGKVSIEKPFIKEA--DGSKSK 80 Query: 358 PLYPQECRQGRISYSGEFKVE 420 +YP E R ++YS +E Sbjct: 81 -IYPTEARLRNLTYSAHMSLE 100
>HPCL_MOUSE (Q9QXE0) 2-hydroxyphytanoyl-CoA lyase (EC 4.1.-.-) (2-HPCL)| Length = 581 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 376 TPAGRAVVPTDHPSLVGA 323 TP G+ VVP +HP+ VGA Sbjct: 250 TPMGKGVVPDNHPNCVGA 267
>RPB2_YEAST (P08518) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (B150) (RNA polymerase II subunit 2) Length = 1224 Score = 28.9 bits (63), Expect = 6.0 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 16/104 (15%) Frame = +1 Query: 157 EEDYATLRELYRP------HIESFDYFLDEGLDKMLLSIRPMEITHPSSNTT-------- 294 E+ +A + +R ++SF+ F+D L ++ + + + +TT Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRK 87 Query: 295 LRMSLEKGHVLPPMKDGRLG--QPLYPQECRQGRISYSGEFKVE 420 +S K +V PM + G LYPQE R ++YS V+ Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVD 131
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Frame = +1 Query: 13 TLPAESPHAAAT----RRSPAPSCHTLAHRIPP 99 T+PA +P AT RR PAP + H +PP Sbjct: 23 TVPATTPARPATITIQRRHPAPKADSTPHTLPP 55
>RPOB_GLOVI (Q7NIA0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1112 Score = 28.5 bits (62), Expect = 7.9 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = +1 Query: 175 LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKDGRLG 354 L +L ESF +FL+EGL + LLS P+ ++ T +M L H L +D +L Sbjct: 26 LPDLVEIQRESFRWFLEEGLIEELLSFSPI------TDYTGKMEL---HFL---QDYKLK 73 Query: 355 QPLYP-QECRQGRISYSGEFKV 417 +P Y +E ++ +YS + V Sbjct: 74 EPKYSVEEAKRRDSTYSVQMYV 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,472,252 Number of Sequences: 219361 Number of extensions: 803717 Number of successful extensions: 2532 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 2432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2520 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
