ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl39c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 149 2e-36
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 55 6e-08
3SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit ... 30 2.0
4PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM ... 29 4.5
5MYO1F_HUMAN (O00160) Myosin If (Myosin-IE) 29 4.5
6SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 28 7.7

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score =  149 bits (377), Expect = 2e-36
 Identities = 75/99 (75%), Positives = 76/99 (76%)
 Frame = +2

Query: 143 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 322
           MLTATKPLVGGAC          TFVVPEARRKPGNGRRTSVSKVG             L
Sbjct: 1   MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60

Query: 323 SADSNGAAVGTVTRPDVHVQDRTHATEMEATVTVHMSKA 439
           SADSNGAAVGTVTRPDVHVQDRTHATEM+ATVTVHMSKA
Sbjct: 61  SADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKA 99



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:2)
          Length = 932

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 39/97 (40%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = +2

Query: 143 MLTATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 319
           M TATKPLVG             +F+V EARRKP  N RRT V                 
Sbjct: 1   MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVGSTSTTTTTTT------ 51

Query: 320 LSADSNGAAVGTVTRPDVHVQDRTHATEMEATVTVHM 430
           +  D NG A+ TV +P  H  D     EM+ATV+VHM
Sbjct: 52  ILTDVNGPALTTVAKPG-HQYDLKQTVEMKATVSVHM 87



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>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium|
           channel protein type X alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.8) (Peripheral nerve
           sodium channel 3) (Sensory neuron sodium channel)
          Length = 1956

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +1

Query: 64  LGRNQPRRCNLPPHRVAQ*PTPQRTHDADGDQAASRGRVCRAVVVGPAEDVRGAR 228
           LGR   +   LP   + Q P P R H  +G      G +      GPA D  G +
Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592



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>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa)
          Length = 1200

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 242 VSGEPRAPRTSSAGPTTTARHTRPRLAAWSPSA 144
           +S EPR PR  S+      RH RP L A  P A
Sbjct: 71  LSREPRGPRALSSFVRDARRHPRPALTASPPPA 103



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>MYO1F_HUMAN (O00160) Myosin If (Myosin-IE)|
          Length = 1098

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 64   LGRNQPRRCNLPPHRVAQ*PTPQRTHDADGDQAASRGRVCRAVVVGPAEDVRGARGSPET 243
            + + +PRR +  P R A  P P R  D +G   ++RG      ++      R  RG P T
Sbjct: 930  MAKGKPRRSSQAPTRAA--PAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHRPPRGPPST 987



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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/66 (33%), Positives = 26/66 (39%)
 Frame = -1

Query: 227 RAPRTSSAGPTTTARHTRPRLAAWSPSASWVRCGVGYCATRWGGRLHRLGWFRPS*TVQP 48
           R+   S  G   + RH R R  +WS S S  R    Y  +R  GR H  G  R       
Sbjct: 378 RSSSRSRRGYYRSGRHARSRSRSWSRSRSRSR---RYSRSRSRGRRHSDGGSRDGHRYSR 434

Query: 47  CPGRSG 30
            P R G
Sbjct: 435 SPARRG 440


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,441,654
Number of Sequences: 219361
Number of extensions: 943706
Number of successful extensions: 2851
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2849
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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