ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome... 42 0.37
2gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 0.37
3gb|CP000249.1| Frankia sp. CcI3, complete genome 42 0.37
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.37
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.37
6dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 0.37
7dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.37
8dbj|AK063638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.37
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.37
10ref|XM_522954.1| PREDICTED: Pan troglodytes similar to Type III ... 40 1.5
11ref|NM_192800.1| Oryza sativa (japonica cultivar-group), predic... 40 1.5
12gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.5
13ref|XM_993192.1| PREDICTED: Mus musculus hypothetical LOC319225 ... 40 1.5
14ref|XM_920558.2| PREDICTED: Mus musculus hypothetical LOC633385 ... 40 1.5
15ref|XM_898079.2| PREDICTED: Mus musculus hypothetical LOC319225 ... 40 1.5
16dbj|AK051854.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 1.5
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
19gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 1.5
20dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
21dbj|AK070411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.5
22emb|AL049836.3|CNS0000H Human chromosome 14 DNA sequence BAC R-1... 40 1.5
23emb|AL355032.6|CNS05TC3 Human chromosome 14 DNA sequence BAC R-7... 40 1.5
24gb|AC129223.5| Mus musculus BAC clone RP24-535L7 from 9, complet... 40 1.5
25gb|AC147565.4| Mus musculus BAC clone RP23-116P18 from 9, comple... 40 1.5
26ref|NM_192420.1| Oryza sativa (japonica cultivar-group), predic... 38 5.8
27gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 5.8
28gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome... 38 5.8
29gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome... 38 5.8
30gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene clu... 38 5.8
31gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 38 5.8
32ref|XM_566442.1| Cryptococcus neoformans hypothetical protein (C... 38 5.8
33gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 38 5.8
34emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 38 5.8
35gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 38 5.8
36dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 5.8
37emb|BX296521.18| Zebrafish DNA sequence from clone CH211-194E11 ... 38 5.8
38gb|AF421382.1|AF421382 Mycobacterium avium EmrB efflux protein (... 38 5.8
39gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 5.8
40dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.8
41gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 38 5.8
42dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.8
43dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic D... 38 5.8
44dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.8
45dbj|AK111300.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.8
46dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 5.8
47emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 38 5.8
48gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 38 5.8
49gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 38 5.8
50gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 5.8 
>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038F07,
              complete sequence
          Length = 175703

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 85     ccctatcccgccgccggccgg 105
              |||||||||||||||||||||
Sbjct: 109008 ccctatcccgccgccggccgg 108988
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 25     ccggcgcggctcggggcgagc 45
              |||||||||||||||||||||
Sbjct: 410660 ccggcgcggctcggggcgagc 410680



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 49      atcggcgtcggcgccgcga 67
               |||||||||||||||||||
Sbjct: 4473969 atcggcgtcggcgccgcga 4473987
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 93      cgccgccggccggattcggccggaa 117
               ||||||||||||||||| |||||||
Sbjct: 1086437 cgccgccggccggattcagccggaa 1086461



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 82      ccgccctatcccgccgccg 100
               |||||||||||||||||||
Sbjct: 4391707 ccgccctatcccgccgccg 4391725
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 85       ccctatcccgccgccggccgg 105
                |||||||||||||||||||||
Sbjct: 19390457 ccctatcccgccgccggccgg 19390437



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 47       gcatcggcgtcggcgccgc 65
                |||||||||||||||||||
Sbjct: 13308186 gcatcggcgtcggcgccgc 13308168
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 85      ccctatcccgccgccggccgg 105
               |||||||||||||||||||||
Sbjct: 2140668 ccctatcccgccgccggccgg 2140688
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 47      gcatcggcgtcggcgccgcga 67
               |||||||||||||||||||||
Sbjct: 5297997 gcatcggcgtcggcgccgcga 5297977



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 49      atcggcgtcggcgccgcgacaag 71
               |||||||||||||||||| ||||
Sbjct: 4886544 atcggcgtcggcgccgcgccaag 4886566



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 48      catcggcgtcggcgccgcg 66
               |||||||||||||||||||
Sbjct: 3628816 catcggcgtcggcgccgcg 3628798
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>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1679_B08
          Length = 142529

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    ccctatcccgccgccggccgg 105
             |||||||||||||||||||||
Sbjct: 55361 ccctatcccgccgccggccgg 55381
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>dbj|AK063638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G05, full
           insert sequence
          Length = 1326

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 85  ccctatcccgccgccggccgg 105
           |||||||||||||||||||||
Sbjct: 656 ccctatcccgccgccggccgg 636
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 85       ccctatcccgccgccggccgg 105
                |||||||||||||||||||||
Sbjct: 19550006 ccctatcccgccgccggccgg 19549986



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 47       gcatcggcgtcggcgccgc 65
                |||||||||||||||||||
Sbjct: 13388365 gcatcggcgtcggcgccgc 13388347
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>ref|XM_522954.1| PREDICTED: Pan troglodytes similar to Type III iodothyronine
            deiodinase (Type-III 5deiodinase) (DIOIII) (Type 3 DI)
            (5DIII) (LOC467559), mRNA
          Length = 1995

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   ggagctccggcgcggctcgg 38
            ||||||||||||||||||||
Sbjct: 1382 ggagctccggcgcggctcgg 1401
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>ref|NM_192800.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 39 ggcgagcagcatcggcgtcg 58
          ||||||||||||||||||||
Sbjct: 57 ggcgagcagcatcggcgtcg 76
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ggcgagcagcatcggcgtcg 58
              ||||||||||||||||||||
Sbjct: 120979 ggcgagcagcatcggcgtcg 120960
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>ref|XM_993192.1| PREDICTED: Mus musculus hypothetical LOC319225 (LOC319225), mRNA
          Length = 3038

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gaggccgcggggtcaccggg 20
           ||||||||||||||||||||
Sbjct: 382 gaggccgcggggtcaccggg 401
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>ref|XM_920558.2| PREDICTED: Mus musculus hypothetical LOC633385 (LOC633385), mRNA
          Length = 3037

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gaggccgcggggtcaccggg 20
           ||||||||||||||||||||
Sbjct: 382 gaggccgcggggtcaccggg 401
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>ref|XM_898079.2| PREDICTED: Mus musculus hypothetical LOC319225 (LOC319225), mRNA
          Length = 3038

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gaggccgcggggtcaccggg 20
           ||||||||||||||||||||
Sbjct: 382 gaggccgcggggtcaccggg 401
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>dbj|AK051854.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230010O13
           product:unclassifiable, full insert sequence
          Length = 1792

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gaggccgcggggtcaccggg 20
           ||||||||||||||||||||
Sbjct: 329 gaggccgcggggtcaccggg 310
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 39       ggcgagcagcatcggcgtcg 58
                ||||||||||||||||||||
Sbjct: 28336737 ggcgagcagcatcggcgtcg 28336718
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 39       ggcgagcagcatcggcgtcg 58
                ||||||||||||||||||||
Sbjct: 24500724 ggcgagcagcatcggcgtcg 24500705



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 40       gcgagcagcatcggcgtcg 58
                |||||||||||||||||||
Sbjct: 26508045 gcgagcagcatcggcgtcg 26508063
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      caccgggagctccggcgcgg 33
               ||||||||||||||||||||
Sbjct: 2467656 caccgggagctccggcgcgg 2467675
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0686E09
          Length = 156425

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ggcgagcagcatcggcgtcg 58
             ||||||||||||||||||||
Sbjct: 81108 ggcgagcagcatcggcgtcg 81089
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>dbj|AK070411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023053C07, full
           insert sequence
          Length = 2466

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  ggcgagcagcatcggcgtcg 58
           ||||||||||||||||||||
Sbjct: 248 ggcgagcagcatcggcgtcg 267
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>emb|AL049836.3|CNS0000H Human chromosome 14 DNA sequence BAC R-1029J19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 207774

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     ggagctccggcgcggctcgg 38
              ||||||||||||||||||||
Sbjct: 115591 ggagctccggcgcggctcgg 115610
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>emb|AL355032.6|CNS05TC3 Human chromosome 14 DNA sequence BAC R-796G6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 203108

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ggagctccggcgcggctcgg 38
              ||||||||||||||||||||
Sbjct: 176461 ggagctccggcgcggctcgg 176442
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>gb|AC129223.5| Mus musculus BAC clone RP24-535L7 from 9, complete sequence
          Length = 150462

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gaggccgcggggtcaccggg 20
              ||||||||||||||||||||
Sbjct: 107196 gaggccgcggggtcaccggg 107215
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>gb|AC147565.4| Mus musculus BAC clone RP23-116P18 from 9, complete sequence
          Length = 206373

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gaggccgcggggtcaccggg 20
              ||||||||||||||||||||
Sbjct: 181412 gaggccgcggggtcaccggg 181393
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>ref|NM_192420.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1770

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 40 gcgagcagcatcggcgtcg 58
          |||||||||||||||||||
Sbjct: 58 gcgagcagcatcggcgtcg 76
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
             sequence
          Length = 2300533

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    cctatcccgccgccggccg 104
             |||||||||||||||||||
Sbjct: 40298 cctatcccgccgccggccg 40280
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>gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035N09,
              complete sequence
          Length = 129468

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     gcatcggcgtcggcgccgc 65
              |||||||||||||||||||
Sbjct: 126997 gcatcggcgtcggcgccgc 126979
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>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03
             map S20262S, complete sequence
          Length = 149553

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    gcatcggcgtcggcgccgc 65
             |||||||||||||||||||
Sbjct: 24539 gcatcggcgtcggcgccgc 24521
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>gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene cluser, complete
             sequence; and bacteriophytochrome (bphP), PpsR protein
             (ppsR), cytochrome C2 (cycA), geranylgeranyl
             bacteriochlorophyll reductase (bchP), light harvesting
             pigment major facilitator family (bch2),
             geranylgeranyl-bacteriochlorophyll synthetase (bchG),
             PpsR1 (ppsR1), and transcriptional regulator, AerR (aerR)
             genes, complete cds; and 2-vinyl bacteriochlorophillide
             hydratase BchF subunit (bchF) gene, partial cds
          Length = 30040

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    gcatcggcgtcggcgccgc 65
             |||||||||||||||||||
Sbjct: 25861 gcatcggcgtcggcgccgc 25843
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 92      ccgccgccggccggattcg 110
               |||||||||||||||||||
Sbjct: 3176977 ccgccgccggccggattcg 3176959
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>ref|XM_566442.1| Cryptococcus neoformans hypothetical protein (CNA00130) partial mRNA
          Length = 3025

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   cctatcccgccgccggccg 104
            |||||||||||||||||||
Sbjct: 1017 cctatcccgccgccggccg 999
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   ccggattcggccggaatcg 120
             |||||||||||||||||||
Sbjct: 46502 ccggattcggccggaatcg 46520
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 92      ccgccgccggccggattcg 110
               |||||||||||||||||||
Sbjct: 1354427 ccgccgccggccggattcg 1354409
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     gcatcggcgtcggcgccgc 65
              |||||||||||||||||||
Sbjct: 362991 gcatcggcgtcggcgccgc 363009
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 92      ccgccgccggccggattcggccg 114
               |||||||||||||| ||||||||
Sbjct: 2705665 ccgccgccggccggtttcggccg 2705643
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>emb|BX296521.18| Zebrafish DNA sequence from clone CH211-194E11 in linkage group 7,
              complete sequence
          Length = 185817

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      gccgcggggtcaccgggag 22
              |||||||||||||||||||
Sbjct: 112333 gccgcggggtcaccgggag 112351
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>gb|AF421382.1|AF421382 Mycobacterium avium EmrB efflux protein (emrB) gene, complete cds
          Length = 1617

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 35  tcggggcgagcagcatcgg 53
           |||||||||||||||||||
Sbjct: 538 tcggggcgagcagcatcgg 520
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 49      atcggcgtcggcgccgcga 67
               |||||||||||||||||||
Sbjct: 1400518 atcggcgtcggcgccgcga 1400500
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 47      gcatcggcgtcggcgccgc 65
               |||||||||||||||||||
Sbjct: 2342734 gcatcggcgtcggcgccgc 2342716
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 92      ccgccgccggccggattcg 110
               |||||||||||||||||||
Sbjct: 2099545 ccgccgccggccggattcg 2099527
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>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0095O23
          Length = 159792

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    gcatcggcgtcggcgccgc 65
             |||||||||||||||||||
Sbjct: 21144 gcatcggcgtcggcgccgc 21126
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>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0006H05
          Length = 154821

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     gcgagcagcatcggcgtcg 58
              |||||||||||||||||||
Sbjct: 116664 gcgagcagcatcggcgtcg 116682
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>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0433B06
          Length = 126258

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    gcatcggcgtcggcgccgc 65
             |||||||||||||||||||
Sbjct: 81773 gcatcggcgtcggcgccgc 81755
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>dbj|AK111300.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-B02, full
           insert sequence
          Length = 768

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  gcgagcagcatcggcgtcg 58
           |||||||||||||||||||
Sbjct: 243 gcgagcagcatcggcgtcg 261
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>dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O19, full
           insert sequence
          Length = 2451

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  gcgagcagcatcggcgtcg 58
           |||||||||||||||||||
Sbjct: 246 gcgagcagcatcggcgtcg 264
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 42      gagcagcatcggcgtcggc 60
               |||||||||||||||||||
Sbjct: 1328076 gagcagcatcggcgtcggc 1328094
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 30      gcggctcggggcgagcagc 48
               |||||||||||||||||||
Sbjct: 2113836 gcggctcggggcgagcagc 2113854
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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    gctccggcgcggctcgggg 40
             |||||||||||||||||||
Sbjct: 22929 gctccggcgcggctcgggg 22911
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 94      gccgccggccggattcggc 112
               |||||||||||||||||||
Sbjct: 1800158 gccgccggccggattcggc 1800176



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     tcggggcgagcagcatcgg 53
              |||||||||||||||||||
Sbjct: 646079 tcggggcgagcagcatcgg 646097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 624,148
Number of Sequences: 3902068
Number of extensions: 624148
Number of successful extensions: 56768
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53108
Number of HSP's gapped (non-prelim): 3660
length of query: 124
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 103
effective length of database: 17,151,101,840
effective search space: 1766563489520
effective search space used: 1766563489520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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