ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41b02 |
|---|---|
| Clone Library Name | barley_pub |
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 32.3 bits (72), Expect = 0.35 Identities = 23/64 (35%), Positives = 30/64 (46%) Frame = +2 Query: 11 PASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGSPXXXXXXXXXXXXTQPPSWRRSGGRS 190 PA+P L+ PP+R++ RR + E PA PA P + PS R G S Sbjct: 739 PAAPALTAPPVRTRRRRKLY-ELPAAGAPPPAAGP--APVPVVPSPTAELPSSPRPGSAS 795 Query: 191 ASPA 202 A PA Sbjct: 796 AGPA 799
>UL51_PRVKA (Q85227) Protein UL51| Length = 236 Score = 25.8 bits (55), Expect(2) = 0.44 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +2 Query: 20 PLLSLPPIRSQIRRPAFPEPPADLGLDPAG 109 P+ + P R+ RPA P PP + G D G Sbjct: 173 PVPAQPAPRATAARPAPPPPPEEAGEDEEG 202 Score = 25.0 bits (53), Expect(2) = 0.44 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 91 GTRPRRIAAPTRDSRDPIPPHPAAKLAPQRRSQRLA 198 G RP AAP +PP AK P +++RLA Sbjct: 202 GDRPEDDAAPL------LPPRAPAKTRPPEKARRLA 231
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 25.8 bits (55), Expect(2) = 1.4 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +2 Query: 11 PASPLLSLPPIRSQIRRPAF-PEPPADLGLDP 103 P SP+ S PP + Q P F P PP + L P Sbjct: 483 PPSPIYSPPPPQVQPLPPTFSPPPPRRIHLPP 514 Score = 23.1 bits (48), Expect(2) = 1.4 Identities = 10/19 (52%), Positives = 10/19 (52%) Frame = +1 Query: 100 PRRIAAPTRDSRDPIPPHP 156 PRRI P R P PP P Sbjct: 507 PRRIHLPPPPHRQPRPPTP 525
>ELF4_HUMAN (Q99607) ETS-related transcription factor Elf-4 (E74-like factor 4)| (Myeloid Elf-1-like factor) Length = 663 Score = 29.6 bits (65), Expect = 2.3 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Frame = +2 Query: 11 PASPLL--SLPPIRSQIRRPAFPEPPADLGLDPAGSPXXXXXXXXXXXXTQPP-----SW 169 P +PL+ LP + + RP P PP G PAG +QPP ++ Sbjct: 477 PGAPLILSGLPQLLAGANRPTNPAPPTVTGAGPAGP------------SSQPPGTVIAAF 524 Query: 170 RRSGGRSASP 199 R+ G +A+P Sbjct: 525 IRTSGTTAAP 534
>PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS10 precursor| Length = 801 Score = 29.3 bits (64), Expect = 2.9 Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Frame = -1 Query: 161 AAGCGGIG--SRESRVGAAIRRGRVPDLRGAQEMRGGGFESEL-GGERGEGKLAG 6 AAG GG+G S G A G L GA RG G L GG G G AG Sbjct: 193 AAGVGGVGGFSNGGATGGAGGAGGAGGLFGAGRERGSGGSGNLTGGAGGAGGNAG 247
>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs| Length = 716 Score = 29.3 bits (64), Expect = 2.9 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Frame = -1 Query: 167 NLAAGCGGIGSRESRVGAAIRRG-----RVPDLRGAQEMRGGGFESELGGERGEG 18 +L G GG+G+R R G + RG R+ + RG +GGGF++ G G G Sbjct: 107 DLPRGGGGMGNRNQRGGPMVSRGGGAGNRLNNRRG----QGGGFQNR--GATGSG 155
>ACN1_ACAGO (Q8I948) Acanthoscurrin-1 precursor| Length = 156 Score = 29.3 bits (64), Expect = 2.9 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -1 Query: 155 GCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEGKLAG 6 G GG+G + G + G + RG GGG+ GG G GK G Sbjct: 107 GGGGLGGGKGLGGGGLGGGGLGGGRGGGYGGGGGYGGGYGGGYGGGKYKG 156
>X_WHV1 (P03167) Trans-activating protein X| Length = 141 Score = 28.9 bits (63), Expect = 3.8 Identities = 15/34 (44%), Positives = 16/34 (47%) Frame = +2 Query: 11 PASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGS 112 PA +L L P SQ P FP P A PA S Sbjct: 11 PARDVLLLRPFGSQSSGPPFPRPSAGSAASPASS 44
>AVEN_HUMAN (Q9NQS1) Cell death regulator Aven| Length = 362 Score = 28.9 bits (63), Expect = 3.8 Identities = 24/66 (36%), Positives = 26/66 (39%) Frame = -1 Query: 203 PPARRCDLRCGANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERG 24 P R R GA A GG G G RGR RGA+ RGGG G RG Sbjct: 20 PGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGG-----GAPRG 74 Query: 23 EGKLAG 6 + G Sbjct: 75 SRREPG 80
>SO2B1_RAT (Q9JHI3) Solute carrier organic anion transporter family member 2B1| (Solute carrier family 21 member 9) (Organic anion transporter moatp1) Length = 682 Score = 28.9 bits (63), Expect = 3.8 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +3 Query: 48 LKSAAPHFLSPPQIWDSTPPDRRAD--AGLARSDPAAPS 158 L A PHF+S P +D + PDR D A L AP+ Sbjct: 122 LLMALPHFISEPYRYDHSSPDRSQDFEASLCLPTTMAPA 160
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 Query: 20 PLLSLPPIRSQIRRPAFPEPPADLGLDP 103 P+L LPP+ S P P P A G+ P Sbjct: 578 PILPLPPLSSATPPPGIPPPGAPQGMPP 605
>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -1 Query: 173 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 18 GA A G GGIG + G G D GA GG + +GG G+G Sbjct: 453 GAGGAGGAGGIGETDGSAGGVATGGEGGD--GAT----GGVDGGVGGAGGKG 498 Score = 28.1 bits (61), Expect = 6.5 Identities = 17/56 (30%), Positives = 21/56 (37%) Frame = -1 Query: 173 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEGKLAG 6 GA L G GG+G +G+ G G G G +GG G G G Sbjct: 206 GATLVGGTGGVGGATGLIGSGGFGGAGGAAAGVGTTGGVGGSGGVGGVFGNGGFGG 261
>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -1 Query: 173 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 18 GA A G GGIG + G G D GA GG + +GG G+G Sbjct: 453 GAGGAGGAGGIGETDGSAGGVATGGEGGD--GAT----GGVDGGVGGAGGKG 498 Score = 28.1 bits (61), Expect = 6.5 Identities = 17/56 (30%), Positives = 21/56 (37%) Frame = -1 Query: 173 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEGKLAG 6 GA L G GG+G +G+ G G G G +GG G G G Sbjct: 206 GATLVGGTGGVGGATGLIGSGGFGGAGGAAAGVGTTGGVGGSGGVGGVFGNGGFGG 261
>REPB_ECOLI (Q57154) RepFIB replication protein A| Length = 325 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +1 Query: 97 RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 177 R R+ AP +S++ P+PP PA K++P+ Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300
>REP11_ECOLI (Q52347) RepFIB replication protein A| Length = 325 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +1 Query: 97 RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 177 R R+ AP +S++ P+PP PA K++P+ Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300
>REP10_ECOLI (Q52219) RepFIB replication protein A| Length = 325 Score = 28.5 bits (62), Expect = 5.0 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +1 Query: 97 RPRRIAAPTRDSRD-PIPPHPAAKLAPQ 177 R R+ AP +S++ P+PP PA K++P+ Sbjct: 273 RRPRLKAPNDESKENPLPPSPAEKVSPE 300
>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)| Length = 296 Score = 28.5 bits (62), Expect = 5.0 Identities = 16/38 (42%), Positives = 16/38 (42%) Frame = +2 Query: 2 GTQPASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGSP 115 G QP P PP Q R P P PPA L P P Sbjct: 134 GPQPRPPQGPPPPAGPQPRPPQGPPPPAGPHLRPTQGP 171
>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2| Length = 871 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 100 PRRIAAPTRDSRDPIPPHPAAKLAPQRRSQRL 195 PR + P +R I P PAAK AP ++ RL Sbjct: 215 PRLVRRPGGPARPVIAPKPAAKPAPAKQRGRL 246
>VCAP_EHV1V (Q6S6S9) Major capsid protein (MCP) (Capsid protein VP5)| Length = 1376 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 72 LSPPQIWDSTPPDRRADAGLARS 140 L PP IWD P RAD G AR+ Sbjct: 731 LLPPLIWDCDPILHRADMGRARA 753
>VCAP_EHV1B (P28920) Major capsid protein (MCP) (Capsid protein VP5)| Length = 1376 Score = 28.1 bits (61), Expect = 6.5 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 72 LSPPQIWDSTPPDRRADAGLARS 140 L PP IWD P RAD G AR+ Sbjct: 731 LLPPLIWDCDPILHRADMGRARA 753
>PTF1A_RAT (Q64305) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 326 Score = 28.1 bits (61), Expect = 6.5 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +3 Query: 54 SAAPHFLSPPQIWDSTPPDRRADAGLARSDPAAP 155 SAAPH L+PP + D P+ D+G D AP Sbjct: 75 SAAPHALAPPPLGDPGEPE---DSGSYCCDAGAP 105
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 28.1 bits (61), Expect = 6.5 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 7/73 (9%) Frame = +2 Query: 5 TQPASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGSPXXXXXXXXXXXXTQP-------P 163 ++PA P P +P+ P PP+ G DP P P Sbjct: 157 SRPAIPSRPTAPTPRSANKPSSPVPPSAGGKDPRAGQTSTTSKATTVSGGGPRPKIVSRP 216 Query: 164 SWRRSGGRSASPA 202 + GRSA PA Sbjct: 217 QSPTAPGRSAPPA 229
>PYRG_PYRAE (Q8ZSY7) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 530 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 136 DPIPPHPAAKLAPQRRSQRLAGG 204 DP PHP LAP++R + GG Sbjct: 404 DPETPHPVVHLAPEQREVDVLGG 426
>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 774 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +2 Query: 11 PASPLLSLPPIRSQIRRPAFPEPPADLGL 97 P S LL+ PP +Q RP PEP GL Sbjct: 740 PPSGLLAKPPRTAQPPRPPVPEPATPRGL 768
>K1C15_SHEEP (O77727) Keratin, type I cytoskeletal 15 (Cytokeratin-15) (CK-15)| (Keratin-15) (K15) Length = 453 Score = 27.7 bits (60), Expect = 8.6 Identities = 17/57 (29%), Positives = 20/57 (35%) Frame = -1 Query: 173 GANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEGKLAGY 3 G +L AG GG G G R R GG+ GG G G G+ Sbjct: 20 GGSLLAGGGGFGGGSLYGGGGSRTISASSARFVSSGSAGGYGGGFGGGAGSGYGGGF 76
>FOXN4_HUMAN (Q96NZ1) Forkhead box protein N4| Length = 517 Score = 27.7 bits (60), Expect = 8.6 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +2 Query: 2 GTQPASPLLSLPPIRSQIRRPAFPEPPADLGLDPAG 109 G QP+S L P + S +P FP PP P G Sbjct: 126 GGQPSSGLQDPPHLYSPATQPQFPLPPGAQQCPPVG 161
>PR28_MYCTU (P0A5Q6) Proline-rich 28 kDa antigen precursor| Length = 310 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 2 GTQPASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGS 112 G A PLL PPI + + PA P +L P GS Sbjct: 28 GKASADPLLPPPPIPAPVSAPATVPPVQNLTALPGGS 64
>PR28_MYCBO (P0A5Q7) Proline-rich 28 kDa antigen precursor| Length = 310 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 Query: 2 GTQPASPLLSLPPIRSQIRRPAFPEPPADLGLDPAGS 112 G A PLL PPI + + PA P +L P GS Sbjct: 28 GKASADPLLPPPPIPAPVSAPATVPPVQNLTALPGGS 64
>SP110_HUMAN (Q9HB58) Sp110 nuclear body protein (Speckled 110 kDa)| (Transcriptional coactivator Sp110) (Interferon-induced protein 41/75) Length = 689 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +2 Query: 11 PASPLLSLPPIRSQIRRPAFPEPPADLGLDPA 106 P SPL S+P IR P PE P ++ P+ Sbjct: 242 PHSPLGSMPEIRDNSPEPNDPEEPQEVSSTPS 273
>PTH_CAUCR (Q9AAV9) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 205 Score = 27.7 bits (60), Expect = 8.6 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = -1 Query: 161 AAGCGGIGSRESRVGAAIRRGRV 93 AAG GI S S+VG A RRGR+ Sbjct: 112 AAGNNGIRSVTSQVGDAFRRGRI 134
>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1| (Adenovirus early region 1B-associated protein 5) (E1B-55 kDa-associated protein 5) (E1B-AP5) Length = 856 Score = 27.7 bits (60), Expect = 8.6 Identities = 20/67 (29%), Positives = 25/67 (37%) Frame = -1 Query: 206 PPPARRCDLRCGANLAAGCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGER 27 PPP +R D R G GG G + + RG GGF++ GG Sbjct: 603 PPPEKRFDNRGGGGFRGRGGGGGFQRY------------ENRGPPGGNRGGFQNRGGGSG 650 Query: 26 GEGKLAG 6 G G G Sbjct: 651 GGGNYRG 657
>FBRL_HUMAN (P22087) Fibrillarin (34 kDa nucleolar scleroderma antigen)| Length = 321 Score = 27.7 bits (60), Expect = 8.6 Identities = 19/46 (41%), Positives = 19/46 (41%) Frame = -1 Query: 155 GCGGIGSRESRVGAAIRRGRVPDLRGAQEMRGGGFESELGGERGEG 18 G G G R R G RGR RG GGG GG RG G Sbjct: 17 GFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +2 Query: 20 PLLSLPPIRSQIRRPAFPEPPADLGLDPAGSP 115 P +SLP Q + PA P PP G +P P Sbjct: 2951 PRVSLPVRSRQQQSPAIPLPPMHSGSEPGARP 2982 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,834,721 Number of Sequences: 219361 Number of extensions: 423563 Number of successful extensions: 2526 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2256 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2517 length of database: 80,573,946 effective HSP length: 44 effective length of database: 70,922,062 effective search space used: 1702129488 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
