ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41e04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC023494.31| Homo sapiens 3 BAC RP11-59M4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 57963 Score = 46.1 bits (23), Expect = 0.061 Identities = 26/27 (96%) Strand = Plus / Minus Query: 37 cccctctctcctccccaccaccaccgc 63 |||||||||||||||||||||| |||| Sbjct: 37858 cccctctctcctccccaccacccccgc 37832
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 gatgggcgatctgtgagccgcg 146 |||||||||||||||||||||| Sbjct: 12281944 gatgggcgatctgtgagccgcg 12281965
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 213 gctcctcgccgcttgcgcggcg 234 |||||||||||||||||||||| Sbjct: 3209763 gctcctcgccgcttgcgcggcg 3209784
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 228 cgcggcgctcgtccccgcggcg 249 |||||||||||||||||||||| Sbjct: 2916744 cgcggcgctcgtccccgcggcg 2916765
>gb|DQ184476.1| Orf virus strain NZ2, complete genome Length = 137820 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 262 gggggcgacgcgcccgcgcccgcggc 287 ||||||| |||||||||||||||||| Sbjct: 49801 gggggcgccgcgcccgcgcccgcggc 49826
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 gatgggcgatctgtgagccgcg 146 |||||||||||||||||||||| Sbjct: 12278707 gatgggcgatctgtgagccgcg 12278728
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 44 ctcctccccaccaccaccgcggccgc 69 |||||||||||||||||||| ||||| Sbjct: 8713969 ctcctccccaccaccaccgccgccgc 8713994
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 gatgggcgatctgtgagccgcg 146 |||||||||||||||||||||| Sbjct: 51477 gatgggcgatctgtgagccgcg 51498
>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463G12 Length = 145403 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 44 ctcctccccaccaccaccgcggccgc 69 |||||||||||||||||||| ||||| Sbjct: 121016 ctcctccccaccaccaccgccgccgc 121041
>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052K15 Length = 156250 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Plus Query: 44 ctcctccccaccaccaccgcggccgc 69 |||||||||||||||||||| ||||| Sbjct: 13048 ctcctccccaccaccaccgccgccgc 13073
>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full insert sequence Length = 3171 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 gatgggcgatctgtgagccgcg 146 |||||||||||||||||||||| Sbjct: 183 gatgggcgatctgtgagccgcg 204
>dbj|AK063627.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F03, full insert sequence Length = 707 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 44 ctcctccccaccaccaccgcggccgc 69 |||||||||||||||||||| ||||| Sbjct: 181 ctcctccccaccaccaccgccgccgc 156
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 42.1 bits (21), Expect = 0.95 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 cccctctctcctccccaccaccacc 61 |||||||| |||||||||||||||| Sbjct: 47232 cccctctcccctccccaccaccacc 47208
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cccaccaccaccgcggccgcc 70 ||||||||||||||||||||| Sbjct: 2492923 cccaccaccaccgcggccgcc 2492903
>gb|AY530951.1| Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds Length = 158797 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 gcggcgctcgtccccgcggcg 249 ||||||||||||||||||||| Sbjct: 104299 gcggcgctcgtccccgcggcg 104279
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcggcgctcgtccccgcggcg 249 ||||||||||||||||||||| Sbjct: 192463 gcggcgctcgtccccgcggcg 192483 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 gcggcgctcgtccccgcggcg 249 ||||||||||||||||||||| Sbjct: 182533 gcggcgctcgtccccgcggcg 182553
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 accaccaccgcggccgccatc 73 ||||||||||||||||||||| Sbjct: 419585 accaccaccgcggccgccatc 419565
>gb|AY023077.1| Oryza sativa microsatellite MRG5402 containing (GAG)X8, closest to marker S13561, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 95 ccaccaccaccgcggccgcc 76
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ccttcttcctcgacccctctctcc 47 ||||||||||| |||||||||||| Sbjct: 79838 ccttcttcctctacccctctctcc 79861
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ccttcttcctcgacccctctctcc 47 ||||||||||| |||||||||||| Sbjct: 1719 ccttcttcctctacccctctctcc 1742
>gb|AC121517.7| Mus musculus chromosome 15, clone RP23-120A12, complete sequence Length = 222681 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctctcctccccaccaccacc 61 |||||||||||||||||||| Sbjct: 54066 ctctcctccccaccaccacc 54047
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 ctcgccgcttgcgcggcgctcgtc 240 |||||||| ||||||||||||||| Sbjct: 1340829 ctcgccgcctgcgcggcgctcgtc 1340806
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctctcctccccaccaccacc 61 |||||||||||||||||||| Sbjct: 68761 ctctcctccccaccaccacc 68780
>ref|NM_001040018.1| Gallus gallus olfactomedin-like 3 (OLFML3), mRNA Length = 1179 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gctcctcctgctgctcctcgccgc 224 ||||||||||| |||||||||||| Sbjct: 21 gctcctcctgccgctcctcgccgc 44
>gb|BC058963.1| Mus musculus calneuron 1, mRNA (cDNA clone MGC:66918 IMAGE:6811387), complete cds Length = 2566 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 591 cgcagggagggggcgacgcg 572
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 ctcgccgcttgcgcggcgctcgtc 240 |||||||| ||||||||||||||| Sbjct: 2119206 ctcgccgcctgcgcggcgctcgtc 2119229
>ref|NM_021371.1| Mus musculus calneuron 1 (Caln1), mRNA Length = 2123 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 603 cgcagggagggggcgacgcg 584
>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence Length = 248320 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 130038 cgcagggagggggcgacgcg 130057
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 ccctctctcctccccaccaccacc 61 ||||||||||||||| |||||||| Sbjct: 650558 ccctctctcctcccccccaccacc 650581
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence Length = 187517 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 78611 ccaccaccaccgcggccgcc 78592
>gb|AY271650.1| Streptomyces hygroscopicus isolate ASH34 ketosyntase/methyl-malonyl-CoA transferase (pksI) gene, partial cds Length = 720 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 ccaccaccgcggccgccatctccc 77 |||||||||||||||| ||||||| Sbjct: 280 ccaccaccgcggccgcgatctccc 257
>ref|XM_801760.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053511787.10) partial mRNA Length = 795 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgctcctcctgctgctcctc 219 |||||||||||||||||||| Sbjct: 327 cgctcctcctgctgctcctc 346
>ref|XM_803500.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053506971.60) partial mRNA Length = 819 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgctcctcctgctgctcctc 219 |||||||||||||||||||| Sbjct: 327 cgctcctcctgctgctcctc 346
>ref|XM_810626.1| Trypanosoma cruzi strain CL Brener puromycin-sensitive aminopeptidase-like protein (Tc00.1047053508593.150) partial mRNA Length = 3540 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 caccaccgcggccgccatctcccg 78 |||||||||||| ||||||||||| Sbjct: 1866 caccaccgcggcagccatctcccg 1843
>ref|XM_816836.1| Trypanosoma cruzi strain CL Brener puromycin-sensitive aminopeptidase-like protein (Tc00.1047053506529.90) partial mRNA Length = 3543 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 caccaccgcggccgccatctcccg 78 |||||||||||| ||||||||||| Sbjct: 1866 caccaccgcggcagccatctcccg 1843
>gb|AC123058.3| Mus musculus BAC clone RP23-188J8 from 19, complete sequence Length = 194636 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 acccctctctcctccccacc 55 |||||||||||||||||||| Sbjct: 4423 acccctctctcctccccacc 4404
>gb|AY392421.1| Streptomyces clavuligerus plasmid pSCL2 clone contig9.69, partial sequence Length = 3618 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 cgcggccgccatctcccgcacccg 84 |||||||| ||||||||||||||| Sbjct: 442 cgcggccgtcatctcccgcacccg 465
>gb|AC124952.15| Medicago truncatula clone mth2-24m24, complete sequence Length = 134356 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ctctctcctccccaccacca 59 |||||||||||||||||||| Sbjct: 37887 ctctctcctccccaccacca 37868
>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence Length = 107371 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 ccccaccaccaccgcggccgccatctcc 76 ||||||||||||| | |||||||||||| Sbjct: 74392 ccccaccaccacctccgccgccatctcc 74365
>gb|AC124969.12| Medicago truncatula clone mth2-15o15, complete sequence Length = 134863 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ctctctcctccccaccacca 59 |||||||||||||||||||| Sbjct: 26792 ctctctcctccccaccacca 26773
>gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map 7, complete sequence Length = 212485 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 accaccaccgcggccgccat 72 |||||||||||||||||||| Sbjct: 2739 accaccaccgcggccgccat 2758
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gggcgacgcgcccgcgcccg 283 |||||||||||||||||||| Sbjct: 1373969 gggcgacgcgcccgcgcccg 1373988 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gggcgacgcgcccgcgcccg 283 |||||||||||||||||||| Sbjct: 1373555 gggcgacgcgcccgcgcccg 1373574
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 ctcgccgcttgcgcggcgctcgtc 240 |||||||| ||||||||||||||| Sbjct: 2254037 ctcgccgcctgcgcggcgctcgtc 2254014
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 catctcccgcacccgcacgc 89 |||||||||||||||||||| Sbjct: 288675 catctcccgcacccgcacgc 288694
>dbj|AB236173.1| Gallus gallus ONT1 mRNA for Olfactomedin-Noelin-Tiarin factor 1, complete cds Length = 1179 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gctcctcctgctgctcctcgccgc 224 ||||||||||| |||||||||||| Sbjct: 21 gctcctcctgccgctcctcgccgc 44
>gb|AC157538.19| Medicago truncatula clone mth2-150a17, complete sequence Length = 102530 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctctctcctccccaccacca 59 |||||||||||||||||||| Sbjct: 33352 ctctctcctccccaccacca 33371
>gb|AC090123.68| Mus musculus strain C57BL/6J clone rp23-323l3 map 7, complete sequence Length = 223438 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 accaccaccgcggccgccat 72 |||||||||||||||||||| Sbjct: 181356 accaccaccgcggccgccat 181375
>gb|AC131239.20| Medicago truncatula clone mth2-18o15, complete sequence Length = 140751 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctctctcctccccaccacca 59 |||||||||||||||||||| Sbjct: 40224 ctctctcctccccaccacca 40243
>gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, complete sequence Length = 162784 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctctcctccccaccaccacc 61 |||||||||||||||||||| Sbjct: 20814 ctctcctccccaccaccacc 20795
>gb|AY436766.1| Triticum aestivum low-molecular-weight glutenin subunit group 5 type III gene, promoter region Length = 1945 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 cccaccaccaccgcggccgc 69 |||||||||||||||||||| Sbjct: 415 cccaccaccaccgcggccgc 396
>dbj|AK163648.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830009F22 product:calneuron 1, full insert sequence Length = 1566 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 75 cgcagggagggggcgacgcg 56
>dbj|AK158892.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K430359E17 product:calneuron 1, full insert sequence Length = 2075 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 584 cgcagggagggggcgacgcg 565
>gb|U25724.1|CPU25724 Cavia porcellus alpha-2C adrenoceptor gene, complete cds Length = 1995 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gacccctctctcctccccac 54 |||||||||||||||||||| Sbjct: 1711 gacccctctctcctccccac 1692
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gggcgacgcgcccgcgcccg 283 |||||||||||||||||||| Sbjct: 1259808 gggcgacgcgcccgcgcccg 1259789
>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10) Length = 98944 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 152 ccaccaccaccgcggccgcc 133
>emb|BX934430.2| Gallus gallus finished cDNA, clone ChEST969p12 Length = 1037 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gctcctcctgctgctcctcgccgc 224 ||||||||||| |||||||||||| Sbjct: 87 gctcctcctgccgctcctcgccgc 110
>emb|CR353701.1| Gallus gallus finished cDNA, clone ChEST933m5 Length = 1341 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gctcctcctgctgctcctcgccgc 224 ||||||||||| |||||||||||| Sbjct: 104 gctcctcctgccgctcctcgccgc 127
>gb|AC012543.4|AC012543 Homo sapiens, clone RP11-1K11, complete sequence Length = 159697 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cccctctctcctccccacca 56 |||||||||||||||||||| Sbjct: 42279 cccctctctcctccccacca 42298
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 27037710 ccaccaccaccgcggccgcc 27037691
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ccttcttcctcgacccctctctcc 47 ||||||||||| |||||||||||| Sbjct: 28275037 ccttcttcctctacccctctctcc 28275060
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctctcctccccaccaccacc 61 |||||||||||||||||||| Sbjct: 23136986 ctctcctccccaccaccacc 23137005
>emb|BX950745.1| Gallus gallus finished cDNA, clone ChEST820f10 Length = 1322 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gctcctcctgctgctcctcgccgc 224 ||||||||||| |||||||||||| Sbjct: 89 gctcctcctgccgctcctcgccgc 112
>gb|AC160924.1| Medicago truncatula chromosome 7 BAC clone mte1-74g1, complete sequence Length = 98471 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 ccccaccaccaccgcggccgccatctcc 76 ||||||||||||| | |||||||||||| Sbjct: 31478 ccccaccaccacctccgccgccatctcc 31451
>gb|AC007971.3| Homo sapiens BAC clone RP11-510C23 from 2, complete sequence Length = 146705 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 gacccctctctcctccccaccacc 58 |||||| ||||||||||||||||| Sbjct: 127785 gaccccactctcctccccaccacc 127808
>ref|XM_344102.2| PREDICTED: Rattus norvegicus calneuron 1 (predicted) (Caln1_predicted), mRNA Length = 1912 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 1062 cgcagggagggggcgacgcg 1043
>dbj|AK067843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127F16, full insert sequence Length = 1431 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 157 ccaccaccaccgcggccgcc 176
>gb|BC057129.1| Mus musculus calneuron 1, mRNA (cDNA clone MGC:63247 IMAGE:6811387), complete cds Length = 2566 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 591 cgcagggagggggcgacgcg 572
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 ctcgccgcttgcgcggcgctcgtc 240 |||||||| ||||||||||||||| Sbjct: 877729 ctcgccgcatgcgcggcgctcgtc 877706
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 ccttcttcctcgacccctctctcc 47 ||||||||||| |||||||||||| Sbjct: 28259615 ccttcttcctctacccctctctcc 28259638
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 26963299 ccaccaccaccgcggccgcc 26963280
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 118527 ccaccaccaccgcggccgcc 118546
>gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosome 19, complete sequence Length = 148454 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 acccctctctcctccccacc 55 |||||||||||||||||||| Sbjct: 144412 acccctctctcctccccacc 144393
>gb|AC127238.5| Mus musculus BAC clone RP24-378P20 from 7, complete sequence Length = 224224 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 28 cttcctcgacccctctctcctccccacc 55 |||||||||||| |||||||| |||||| Sbjct: 43075 cttcctcgacccttctctcctacccacc 43048
>gb|AC131802.4| Mus musculus BAC clone RP24-542I6 from 7, complete sequence Length = 174956 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 cttcctcgacccctctctcctccccacc 55 |||||||||||| |||||||| |||||| Sbjct: 128984 cttcctcgacccttctctcctacccacc 129011
>emb|CT573078.1| Medicago truncatula chromosome 5 clone mte1-4f8, COMPLETE SEQUENCE Length = 165916 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ccaccaccaccgcggccgcc 70 |||||||||||||||||||| Sbjct: 99204 ccaccaccaccgcggccgcc 99223
>gb|AC145553.4| Mus musculus BAC clone RP23-106M1 from 7, complete sequence Length = 188631 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 28 cttcctcgacccctctctcctccccacc 55 |||||||||||| |||||||| |||||| Sbjct: 186928 cttcctcgacccttctctcctacccacc 186901
>emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12 on chromosome 3, complete sequence Length = 141577 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ctctctcctccccaccacca 59 |||||||||||||||||||| Sbjct: 103920 ctctctcctccccaccacca 103939
>gb|AC171001.2| Mus musculus BAC clone RP23-317I13 from chromosome 7, complete sequence Length = 183576 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 cttcctcgacccctctctcctccccacc 55 |||||||||||| |||||||| |||||| Sbjct: 42677 cttcctcgacccttctctcctacccacc 42704
>dbj|AB041539.1| Mus musculus brain cDNA, clone MNCb-0849, similar to calmodulin (Homo sapiens) Length = 2123 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 cgcagggagggggcgacgcg 273 |||||||||||||||||||| Sbjct: 603 cgcagggagggggcgacgcg 584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,520,763 Number of Sequences: 3902068 Number of extensions: 2520763 Number of successful extensions: 86433 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83973 Number of HSP's gapped (non-prelim): 2460 length of query: 287 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 265 effective length of database: 17,147,199,772 effective search space: 4544007939580 effective search space used: 4544007939580 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
