ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41h06 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 60.1 bits (144), Expect = 2e-09 Identities = 30/30 (100%), Positives = 30/30 (100%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKNV 196 MLLGGLIDTLTGANKSARLKGTVVLMRKNV Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNV 30
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/29 (75%), Positives = 28/29 (96%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNV 196 +LGG+IDT+TG++K +RLKGTVVLMRKNV Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNV 29
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/28 (71%), Positives = 25/28 (89%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKN 193 +LGG+I LTG NK+ARLKG++VLMRKN Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKN 27
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 35.4 bits (80), Expect = 0.042 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKNV 196 M LGG++D + G + ++KG V+LM+KNV Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNV 30
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 30.0 bits (66), Expect = 1.7 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = +2 Query: 110 LLGGLIDTLTGANKSA---RLKGTVVLMRKNV 196 + G L D LTG ++KGTVVLM+KNV Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNV 32
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 29.6 bits (65), Expect = 2.3 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNV 196 +LGGL+ ++ ++KGTVVLMRKNV Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNV 23
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 29.3 bits (64), Expect = 3.0 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKN 193 L+GGLI G + S ++KGTVV+M+KN Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKN 29
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 28.9 bits (63), Expect = 3.9 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNV 196 N+ ++KGTVVLMRKNV Sbjct: 10 NRGHKIKGTVVLMRKNV 26
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 28.9 bits (63), Expect = 3.9 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = +2 Query: 146 NKSARLKGTVVLMRKNV 196 NK +++GTVVLMRKNV Sbjct: 10 NKGHKIRGTVVLMRKNV 26
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.9 bits (63), Expect = 3.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 28.9 bits (63), Expect = 3.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGR 310 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 264 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 241 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 218 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 195 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 195
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 28.5 bits (62), Expect = 5.1 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +1 Query: 70 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAH 183 G + RRGG DA G D GG R GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 27.7 bits (60), Expect = 8.7 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKNV 196 +LGGL D LTG N + ++KG VLM + + Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKL 28
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 27.7 bits (60), Expect = 8.7 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 79 KARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQE 192 + +RGG E++ + H ++E +GHG + +QE Sbjct: 661 RVKRGGSEEEEEQKGTHHHSLEDEEDEEEGHGRSLSQE 698 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,294,359 Number of Sequences: 219361 Number of extensions: 382906 Number of successful extensions: 1046 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1044 length of database: 80,573,946 effective HSP length: 40 effective length of database: 71,799,506 effective search space used: 1723188144 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
