ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl43a12 |
|---|---|
| Clone Library Name | barley_pub |
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 57.8 bits (138), Expect = 1e-08 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 8/75 (10%) Frame = +3 Query: 222 KEQRIREKKQAEEP--------ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXX 377 K +R+ KKQA E E + ++Y+ +PHGF+E +S +F QFG Sbjct: 65 KIKRLNPKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLAR 124 Query: 378 XXXTGKSKHYGFIEF 422 TG S+HYGF+EF Sbjct: 125 NKKTGNSRHYGFLEF 139
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 53.9 bits (128), Expect = 1e-07 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = +3 Query: 198 KDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXX 377 K+ + K Q+++++ Q + + VLY+GH+P G +E + +F+QFG Sbjct: 20 KEDAEFQKKVQQVKKRPQTGQTLSPG-VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSR 78 Query: 378 XXXTGKSKHYGFIEF 422 TG SK YGF+EF Sbjct: 79 SKKTGGSKGYGFVEF 93
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 48.5 bits (114), Expect = 6e-06 Identities = 27/75 (36%), Positives = 35/75 (46%) Frame = +3 Query: 198 KDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXX 377 KDF + K IR K Q + V+YIGH+P YE + +F QFG Sbjct: 20 KDF---QQKVHEIRRKSQVGAV--SPGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSR 74 Query: 378 XXXTGKSKHYGFIEF 422 TG SK Y ++EF Sbjct: 75 SKKTGNSKGYAYVEF 89
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 45.1 bits (105), Expect = 7e-05 Identities = 23/67 (34%), Positives = 32/67 (47%) Frame = +3 Query: 222 KEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSK 401 K IR K++A T V+YIGH+P E + +F QFG TG SK Sbjct: 25 KVHDIRRKRKANAL--TPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSK 82 Query: 402 HYGFIEF 422 Y ++E+ Sbjct: 83 GYAYVEY 89
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = +3 Query: 231 RIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYG 410 R ++ +Q ++ + V+Y+GH+P E H+ + QFG TG SK Y Sbjct: 32 RTKKPQQKKKEKLNRGVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYA 91 Query: 411 FIEF 422 F+EF Sbjct: 92 FVEF 95
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 42.7 bits (99), Expect = 3e-04 Identities = 22/65 (33%), Positives = 34/65 (52%) Frame = +3 Query: 228 QRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHY 407 +RI ++K+ E+ T V+Y+ H+P+ E + +F QFG TG SK Y Sbjct: 31 KRITQRKKQEQL--TPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGY 88 Query: 408 GFIEF 422 F+EF Sbjct: 89 AFVEF 93
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 38.1 bits (87), Expect = 0.008 Identities = 22/84 (26%), Positives = 37/84 (44%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 SA P T DG+ +E K RE+ T L++G + E H+ +F+++G Sbjct: 68 SARPHTIDGR---VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYG 124 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + +GF+ F Sbjct: 125 KIESTEIITDKQSGKKRGFGFVTF 148
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 36.2 bits (82), Expect = 0.032 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 25/124 (20%) Frame = +3 Query: 126 LRDKKRNQRR---------------VLSRRSAGPKTGDGKDFLP-------LEGKEQRIR 239 ++DK NQ R VL+ R P T DG++ P ++ + R R Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASR---PHTLDGRNIDPKPCTPRGMQPERSRPR 98 Query: 240 EKKQAEEP--ENT-ATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYG 410 E Q +EP EN+ + +++G +PH E + +F +FG + + +G Sbjct: 99 EGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158 Query: 411 FIEF 422 FI F Sbjct: 159 FITF 162
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 35.4 bits (80), Expect = 0.055 Identities = 21/81 (25%), Positives = 36/81 (44%) Frame = +3 Query: 180 PKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXX 359 P DGK +E K R ++++ E + L++G + E+ + +F QFG Sbjct: 94 PHIIDGKT---VEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV 150 Query: 360 XXXXXXXXXTGKSKHYGFIEF 422 TGK + + F+EF Sbjct: 151 SVKLLTDKTTGKRRGFAFVEF 171
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 35.0 bits (79), Expect = 0.072 Identities = 20/84 (23%), Positives = 37/84 (44%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 +A P + DG+ +E K RE+ T L++G + E H+ +F+++G Sbjct: 68 AARPHSIDGR---VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 124 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + +GF+ F Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVTF 148
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 35.0 bits (79), Expect = 0.072 Identities = 20/84 (23%), Positives = 37/84 (44%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 +A P + DG+ +E K RE+ T L++G + E H+ +F+++G Sbjct: 80 AARPHSIDGR---VVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 136 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + +GF+ F Sbjct: 137 KIDTIEIITDRQSGKKRGFGFVTF 160
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 35.0 bits (79), Expect = 0.072 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 LY+G + ED + F+ FG TG+SK YGFI F Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 35.0 bits (79), Expect = 0.072 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 LY+G + ED + F+ FG TG+SK YGFI F Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 35.0 bits (79), Expect = 0.072 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 279 VLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 V+++G++P+ E M+ F Q G TG K YGF EF Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 34.7 bits (78), Expect = 0.094 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 LY+G + ED + F+ FG TG+SK YGFI F Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF 311
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 34.3 bits (77), Expect = 0.12 Identities = 21/90 (23%), Positives = 38/90 (42%) Frame = +3 Query: 153 RVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSC 332 +V + +A P DG+ +E K RE Q T +++G + E H+ Sbjct: 66 KVDAAMNARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 122 Query: 333 FFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +F+Q+G +GK + + F+ F Sbjct: 123 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 34.3 bits (77), Expect = 0.12 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 +A P DG+ +E K RE T +++G + EDH+ +F+Q+G Sbjct: 73 TARPHKVDGR---VVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYG 129 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + + F+ F Sbjct: 130 KIEVIEIMTDRGSGKKRGFAFVTF 153
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 +A P DG+ +E K RE Q T +++G + E H+ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + + F+ F Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 33.9 bits (76), Expect = 0.16 Identities = 21/82 (25%), Positives = 35/82 (42%) Frame = +3 Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356 GP+ G G D + +RI + + L++G++PH E+ + FF FG Sbjct: 306 GPRPGRG-DMEQNDSDNRRIIRYPDSHQ-------LFVGNLPHDIDENELKEFFMSFGNV 357 Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422 GK ++GF+ F Sbjct: 358 VELRINTKGVGGKLPNFGFVVF 379
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 33.9 bits (76), Expect = 0.16 Identities = 21/82 (25%), Positives = 35/82 (42%) Frame = +3 Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356 GP+ G G D + +RI + + L++G++PH E+ + FF FG Sbjct: 306 GPRPGRG-DMEQNDSDNRRIIRYPDSHQ-------LFVGNLPHDIDENELKEFFMSFGNV 357 Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422 GK ++GF+ F Sbjct: 358 VELRINTKGVGGKLPNFGFVVF 379
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 +A P DG+ +E K RE Q T +++G + E H+ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + + F+ F Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 +A P DG+ +E K RE Q T +++G + E H+ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + + F+ F Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 33.9 bits (76), Expect = 0.16 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 +A P DG+ +E K RE Q T +++G + E H+ +F+Q+G Sbjct: 72 NARPHKVDGR---VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 128 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + + F+ F Sbjct: 129 KIEVIEIMTDRGSGKKRGFAFVTF 152
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 33.5 bits (75), Expect = 0.21 Identities = 16/66 (24%), Positives = 31/66 (46%) Frame = +3 Query: 225 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKH 404 + R+RE++ + + + T +L + ++P + + FG TG+SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKG 174 Query: 405 YGFIEF 422 YGF E+ Sbjct: 175 YGFAEY 180
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 33.5 bits (75), Expect = 0.21 Identities = 14/53 (26%), Positives = 27/53 (50%) Frame = +3 Query: 258 EPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 + + T T +++G +P+ + + +F+ FG TGKS+ YGF+ Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 57
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 33.5 bits (75), Expect = 0.21 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Frame = +3 Query: 168 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATV--LYIGHVPHGFYEDHMSCFFQ 341 ++A P DG+ P +R +++ + P ATV L++G + E+ + +F+ Sbjct: 82 QNARPHKIDGRTVEP-----KRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFK 136 Query: 342 QFGXXXXXXXXXXXXTGKSKHYGFIEF 422 FG TGK + + FIEF Sbjct: 137 DFGQIVSVNIVSDKDTGKKRGFAFIEF 163
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 33.5 bits (75), Expect = 0.21 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Frame = +3 Query: 168 RSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATV--LYIGHVPHGFYEDHMSCFFQ 341 ++A P DG+ P +R + + PE ATV L++G + E+ + +F+ Sbjct: 75 QNARPHKVDGRVVEP-----KRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFK 129 Query: 342 QFGXXXXXXXXXXXXTGKSKHYGFIEF 422 Q+G T K + + F+EF Sbjct: 130 QYGTVVSAAIVVDKETRKKRGFAFVEF 156
>ABT1_HUMAN (Q9ULW3) Activator of basal transcription 1 (hABT1) (Basal| transcriptional activator) Length = 272 Score = 33.1 bits (74), Expect = 0.27 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Frame = +3 Query: 210 PLEGKEQRIREKKQAEEPENTAT---------VLYIGHVPHGFYEDHMSCFFQQFG 350 PLEG EQ + +++ EE E A ++Y+GH+P F H+ +G Sbjct: 15 PLEGTEQTLDAEEEQEESEEAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYG 70
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 33.1 bits (74), Expect = 0.27 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +3 Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 + T T +++G +P+ + + +F+ FG TGKS+ YGF+ Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 33.1 bits (74), Expect = 0.27 Identities = 19/81 (23%), Positives = 34/81 (41%) Frame = +3 Query: 180 PKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXX 359 P T DG+ +E K RE+ T L++G + E H+ +F+++G Sbjct: 71 PHTIDGR---VVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKID 127 Query: 360 XXXXXXXXXTGKSKHYGFIEF 422 +GK + + F+ F Sbjct: 128 SIEIITDKQSGKKRGFAFVTF 148
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 32.7 bits (73), Expect = 0.36 Identities = 22/98 (22%), Positives = 44/98 (44%) Frame = +3 Query: 129 RDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHG 308 RD++ ++R+ GP+ + G++ I ++ P++ L+IG++PH Sbjct: 299 RDQRVREQRINIPPQRGPRP------IREAGEQGDIEPRRMVRHPDSHQ--LFIGNLPHE 350 Query: 309 FYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 + + FFQ +G GK ++GF+ F Sbjct: 351 VDKSELKDFFQSYGNVVELRINSG---GKLPNFGFVVF 385
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 32.7 bits (73), Expect = 0.36 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G++P+ E+ + F + G TGK K YGF E+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 32.7 bits (73), Expect = 0.36 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G++P+ E+ + F + G TGK K YGF E+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 32.3 bits (72), Expect = 0.46 Identities = 22/98 (22%), Positives = 43/98 (43%) Frame = +3 Query: 129 RDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHG 308 RD++ ++R+ GP+ + G+ + ++ P++ L+IG++PH Sbjct: 297 RDQRVREQRINIPPQRGPRP------IREAGEPGDVEPRRMVRHPDSHQ--LFIGNLPHE 348 Query: 309 FYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 + + FFQ FG GK ++GF+ F Sbjct: 349 VDKSELKDFFQNFGNVVELRINSG---GKLPNFGFVVF 383
>ABT1_PONPY (Q5R9Y3) Activator of basal transcription 1| Length = 272 Score = 32.0 bits (71), Expect = 0.61 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%) Frame = +3 Query: 210 PLEGKEQRIREKKQAEEPENTAT---------VLYIGHVPHGFYEDHMSCFFQQFG 350 PL+G EQ + +++ EE E+ A ++Y+GH+P F H+ +G Sbjct: 15 PLKGTEQTLDAEEEQEESEDAACGSKKRVVPGIVYLGHIPPRFRPLHVRNLLSAYG 70
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G++P+ E+ + F + G TGK K YGF E+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 32.0 bits (71), Expect = 0.61 Identities = 16/66 (24%), Positives = 30/66 (45%) Frame = +3 Query: 225 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKH 404 + R+RE++ + + + T +L + ++P + + FG TG SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174 Query: 405 YGFIEF 422 YGF E+ Sbjct: 175 YGFAEY 180
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 32.0 bits (71), Expect = 0.61 Identities = 16/66 (24%), Positives = 30/66 (45%) Frame = +3 Query: 225 EQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKH 404 + R+RE++ + + + T +L + ++P + + FG TG SK Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174 Query: 405 YGFIEF 422 YGF E+ Sbjct: 175 YGFAEY 180
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G++P+ E+ + F + G TGK K YGF E+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G++P+ E+ + F + G TGK K YGF E+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G++P+ E+ + F + G TGK K YGF E+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 31.6 bits (70), Expect = 0.79 Identities = 16/69 (23%), Positives = 33/69 (47%) Frame = +3 Query: 216 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGK 395 E E+ +K++ EE E AT+ ++G + ++ + F+ G T + Sbjct: 149 EEDEESSNKKQKNEETEEPATI-FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDR 207 Query: 396 SKHYGFIEF 422 S+ YG+++F Sbjct: 208 SRGYGYVDF 216
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 31.6 bits (70), Expect = 0.79 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = +3 Query: 273 ATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +T LYIG + G E + F F TG+S+ YGF+ F Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>TOP2A_HUMAN (P11388) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1531 Score = 31.6 bits (70), Expect = 0.79 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 117 EMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEP 263 EM +K+N++++ + + G DG + LEG +QR+ EKKQ EP Sbjct: 1226 EMKAEAEKKNKKKIKNENTEGSPQEDGVE---LEGLKQRL-EKKQKREP 1270
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 31.6 bits (70), Expect = 0.79 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +3 Query: 228 QRIREKKQAEEPENTATV--LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSK 401 +R ++ + P ATV L++G + E + +FQ FG TGK + Sbjct: 104 KRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKR 163 Query: 402 HYGFIEF 422 + F+EF Sbjct: 164 GFAFVEF 170
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 31.2 bits (69), Expect = 1.0 Identities = 15/59 (25%), Positives = 30/59 (50%) Frame = +3 Query: 240 EKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 E ++ +EP A L++G++P+ + ++ FQQ G T +S+ +GF+ Sbjct: 86 ETEEYQEPSEDAK-LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFV 143
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 31.2 bits (69), Expect = 1.0 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = +3 Query: 237 REKKQAEEPENT---ATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHY 407 R ++ E P T + +Y+G++P G + + F + G TG+S+ + Sbjct: 214 RRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGF 273 Query: 408 GFI 416 GF+ Sbjct: 274 GFV 276 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/59 (23%), Positives = 31/59 (52%) Frame = +3 Query: 240 EKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 E+++ +EP A L++G++P+ + ++ F+Q G T +S+ +GF+ Sbjct: 125 EEEEFQEPPEDAK-LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFV 182
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/80 (20%), Positives = 33/80 (41%) Frame = +3 Query: 183 KTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXX 362 KT + + L ++ +++ +++ EN++ LY+G + E H+ F G Sbjct: 6 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 65 Query: 363 XXXXXXXXTGKSKHYGFIEF 422 T S Y ++ F Sbjct: 66 IRVCRDAITKTSLGYAYVNF 85
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 30.8 bits (68), Expect = 1.4 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 24/123 (19%) Frame = +3 Query: 126 LRDKKRNQRR---------------VLSRRSAGPKTGDGKDFLP-------LEGKEQRIR 239 ++DK NQ R VL+ R P T DG++ P ++ + R + Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASR---PHTLDGRNIDPKPCTPRGMQPERTRPK 98 Query: 240 E--KKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGF 413 E +K + + +++G +PH E + +F++FG + + +GF Sbjct: 99 EGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158 Query: 414 IEF 422 I F Sbjct: 159 ITF 161
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = +3 Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356 G K GK F+P + +E+ + EK + T +Y+ + F ++ + FF+ +G Sbjct: 157 GKKVYVGK-FIPRKEREKELGEKAKL------FTNVYVKNFTEDFDDEKLKEFFEPYGKI 209 Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422 GKSK +GF+ F Sbjct: 210 TSYKVMSKED-GKSKGFGFVAF 230
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/62 (24%), Positives = 28/62 (45%) Frame = +3 Query: 237 REKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 +E+K A + E + +++G++ + + F+ G TG K YG+I Sbjct: 51 KEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYI 110 Query: 417 EF 422 EF Sbjct: 111 EF 112
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = +3 Query: 258 EPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 EPEN + ++G + +D M F+ QFG T +S+ +GF+ F Sbjct: 18 EPENLRKI-FVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 30.8 bits (68), Expect = 1.4 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 24/123 (19%) Frame = +3 Query: 126 LRDKKRNQRR---------------VLSRRSAGPKTGDGKDFLP-------LEGKEQRIR 239 ++DK NQ R VL+ R P T DG++ P ++ + R + Sbjct: 42 MKDKTTNQSRGFGFVKFKDPNCVGTVLASR---PHTLDGRNIDPKPCTPRGMQPERTRPK 98 Query: 240 E--KKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGF 413 E +K + + +++G +PH E + +F++FG + + +GF Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158 Query: 414 IEF 422 I F Sbjct: 159 ITF 161
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +3 Query: 276 TVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 T +++G +P YED + F++ G +G+++ Y FI F Sbjct: 165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF 213
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 +++G +P+ E + C F Q+G TGKSK + F+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 30.4 bits (67), Expect = 1.8 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 15/102 (14%) Frame = +3 Query: 162 SRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEP---------------ENTATVLYIGH 296 S + ++GD E + EKK+ EP N +++G Sbjct: 210 SSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGR 269 Query: 297 VPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 + + + F+++G +G+SK YG+++F Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 30.4 bits (67), Expect = 1.8 Identities = 14/71 (19%), Positives = 34/71 (47%) Frame = +3 Query: 210 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389 P + + + +E++ + + ++IG + ED++ +F ++G T Sbjct: 137 PPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT 196 Query: 390 GKSKHYGFIEF 422 G+S+ +GF+ F Sbjct: 197 GRSRGFGFLSF 207
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 +++G +P+ E + C F Q+G TGKSK + F+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFL 82
>PAX3_MOUSE (P24610) Paired box protein Pax-3| Length = 479 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Frame = +3 Query: 156 VLSRRSAGPKTGDGKDF-----LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYED 320 +LS R++ P++ +G D LPL+ K++R R AE+ E H P + + Sbjct: 191 ILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250 Query: 321 HMS 329 ++ Sbjct: 251 ELA 253
>PAX3_HUMAN (P23760) Paired box protein Pax-3 (HUP2)| Length = 479 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Frame = +3 Query: 156 VLSRRSAGPKTGDGKDF-----LPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYED 320 +LS R++ P++ +G D LPL+ K++R R AE+ E H P + + Sbjct: 191 ILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTRE 250 Query: 321 HMS 329 ++ Sbjct: 251 ELA 253
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/52 (23%), Positives = 24/52 (46%) Frame = +3 Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 + T +++G +P +ED + F++ G TG ++ Y F+ F Sbjct: 69 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 120
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +2 Query: 173 GRPQNRRRQGFPAAGGERAEDPGEEASRGAGE 268 GRP +R+ GFP G E+ + +++G+GE Sbjct: 192 GRPSSRKASGFPQPGSEQGQS-SSSSTKGSGE 222
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/52 (23%), Positives = 24/52 (46%) Frame = +3 Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 + T +++G +P +ED + F++ G TG ++ Y F+ F Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 210
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/52 (23%), Positives = 24/52 (46%) Frame = +3 Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 + T +++G +P +ED + F++ G TG ++ Y F+ F Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTF 210
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/82 (21%), Positives = 35/82 (42%) Frame = +3 Query: 177 GPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXX 356 GP T DG+ P + +++ K+ + +++G +P E + FF ++G Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYK-----VFLGGLPSNVTETDLRTFFNRYGKV 122 Query: 357 XXXXXXXXXXTGKSKHYGFIEF 422 KS+ +GF+ F Sbjct: 123 TEVVIMYDQEKKKSRGFGFLSF 144
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 ++IG +P+ E + +F +FG T KSK Y FI F Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 30.0 bits (66), Expect = 2.3 Identities = 10/45 (22%), Positives = 21/45 (46%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 LY+G++P D + ++ G +G+S+ +GF+ Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/71 (25%), Positives = 31/71 (43%) Frame = +3 Query: 210 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389 PLEG + + + ++ E+ V YIG++ + + FF + G T Sbjct: 163 PLEGMDIATTQAEDSQFVESPYKV-YIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGT 221 Query: 390 GKSKHYGFIEF 422 KS +GF+ F Sbjct: 222 SKSNGFGFVSF 232
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +3 Query: 279 VLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 V+Y+G +P+ E+ + G TG+SK Y FIEF Sbjct: 19 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEF 66
>RFCL_PYRFU (Q9UWR2) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (PfuRFC large subunit) Length = 479 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/50 (24%), Positives = 30/50 (60%) Frame = +3 Query: 117 EMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPE 266 E+G+R++++ + + KT + K+ + + +E++ EKK+ E+P+ Sbjct: 417 ELGIREEEKPKVEIEEEEEEEEKTEEEKEEIEEKPEEEKEEEKKEKEKPK 466
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = +3 Query: 240 EKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIE 419 E++ A++ E T L+I ++ + E+ F Q+G TGKSK + +++ Sbjct: 299 EEQIAQKIEETGR-LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQ 357 Query: 420 F 422 F Sbjct: 358 F 358
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/71 (23%), Positives = 31/71 (43%) Frame = +3 Query: 210 PLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389 P G R++ A + E A +++G + + + +F +FG T Sbjct: 46 PRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 105 Query: 390 GKSKHYGFIEF 422 G+S+ +GFI F Sbjct: 106 GRSRGFGFILF 116
>HUTU_RHIME (Q92V80) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 557 Score = 29.3 bits (64), Expect = 3.9 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 Query: 407 IMLGLSCLAVPCNPDSFN 354 +M G CLAV CNPDS + Sbjct: 186 VMAGACCLAVECNPDSID 203
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/84 (22%), Positives = 33/84 (39%) Frame = +3 Query: 171 SAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFG 350 SA P DG+ +E K RE T +++G + E H+ +F+ +G Sbjct: 86 SARPHKVDGR---VVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYG 142 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +GK + + F+ F Sbjct: 143 KIETIEVMEDRQSGKKRGFAFVTF 166
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = +3 Query: 249 QAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 Q E PE L+I H+P F + + F FG T SK +GF+ + Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = +3 Query: 249 QAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 Q E PE L+I H+P F + + F FG T SK +GF+ + Sbjct: 394 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G + + + F FG TGKSK YGF+ F Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G + + + F FG TGKSK YGF+ F Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 28.9 bits (63), Expect = 5.1 Identities = 25/112 (22%), Positives = 44/112 (39%) Frame = +3 Query: 87 GATQRFD*ACEMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPE 266 GAT+ A G + + SAG +G G P + ++ A + E Sbjct: 14 GATENGHEAAPEGEAPVEPSAAAAAPAASAG--SGGGTTTAPSGNQNGAEGDQINASKNE 71 Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 A +++G + + + +F +FG TG+S+ +GFI F Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123
>NISP_LACLA (Q07596) Nisin leader peptide-processing serine protease nisP| precursor (EC 3.4.21.-) Length = 682 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +3 Query: 141 RNQRRVLSRRSAG--PKTGDGKDFLPLEG 221 RN R +S RS P TGDG+DFLP G Sbjct: 638 RNSRGAVSVRSQEILPVTGDGEDFLPALG 666
>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)| (MyT1-L) Length = 1186 Score = 28.9 bits (63), Expect = 5.1 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Frame = +3 Query: 111 ACEMGLRDKKRNQRRVLSRRSAG----PKTGDGKDFLPLEGKEQRIREKKQAEEPENTAT 278 A E G RD R+ R+ G PK+ D P GK+ EKK+++ P T Sbjct: 453 AMEAGRRDNMRSYEDQSPRQLPGEDRKPKSSDSHVKKPYYGKDPSRTEKKESKCP--TPG 510 Query: 279 VLYIGHVPHGFYEDHMS 329 GHV G Y H S Sbjct: 511 CDGTGHVT-GLYPHHRS 526
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/62 (27%), Positives = 26/62 (41%) Frame = +3 Query: 237 REKKQAEEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFI 416 R K + + T +L I +VP F + + +G TG SK YGF+ Sbjct: 129 RGKDLIVQLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFV 188 Query: 417 EF 422 E+ Sbjct: 189 EY 190
>GP152_MOUSE (Q8BXS7) Probable G-protein coupled receptor 152| Length = 511 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 176 RPQNRRRQGFPAAGGERAEDPGEEASRG 259 +PQ+ PA G E A +PGEE S G Sbjct: 446 QPQSNTETPIPAFGDESASNPGEENSSG 473
>SYP_CHLTR (P36431) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 581 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = -1 Query: 211 GRKSLPSPVLGPAERRESTRLWFLFLSLSPI----SHAQSNLCVAPEEEEV 71 G + + P+L PAE E T W FLS + +C+AP EEV Sbjct: 65 GGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEV 115
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = +3 Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 ++A L+IG +P+ +D + FG TG SK Y F E+ Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = +3 Query: 267 NTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 ++A L+IG +P+ +D + FG TG SK Y F E+ Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307
>HUTU_RHILO (Q983H8) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 557 Score = 28.9 bits (63), Expect = 5.1 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -3 Query: 407 IMLGLSCLAVPCNPDSFN 354 +M G CLA+ CNPDS + Sbjct: 187 VMAGACCLAIECNPDSID 204
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%) Frame = +2 Query: 122 GAEGQXXXXXXXXXXXXGRPQNRRRQGFPAAGGERAE--------DPGEEASRGA 262 GA+G+ G P + +G P GE+ E DPGE+ +GA Sbjct: 2307 GAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGA 2361
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/47 (29%), Positives = 19/47 (40%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 LY+ +P + M F Q+G TG S+ GFI F Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/53 (22%), Positives = 22/53 (41%) Frame = +3 Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++ T L + ++P +D F G TG+S YGF+ + Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
>TOP2A_PIG (O46374) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1533 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 117 EMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEP 263 EM +K+ ++++ S + G DG + +EG +QR+ EKKQ EP Sbjct: 1226 EMKAEAEKKIKKKIKSENTEGSPQEDGME---VEGLKQRL-EKKQKREP 1270
>GVPL_HALME (Q02237) Protein gvpL| Length = 322 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 183 KTGDGKDFLPLEGKEQRIREKKQAEEPENTATV 281 + G GK FL + ++R+RE+KQ E T T+ Sbjct: 212 EAGSGKSFLLKKQYDKRLRERKQNRRAELTTTL 244
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/56 (25%), Positives = 22/56 (39%) Frame = +3 Query: 255 EEPENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 E EN L++ + ED + F +FG T S+ +GF+ F Sbjct: 94 EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/53 (22%), Positives = 23/53 (43%) Frame = +3 Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 E++ T L + ++P ++ + F G TG+S YGF+ + Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/53 (22%), Positives = 23/53 (43%) Frame = +3 Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 E++ T L + ++P ++ + F G TG+S YGF+ + Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87
>SNX11_HUMAN (Q9Y5W9) Sorting nexin-11| Length = 270 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 229 CSFPSSGRKSLPSPVLGPAERRESTRLW 146 C P SGR+S PSP P+E ++ +W Sbjct: 182 CFLPRSGRRSSPSP--PPSEEKDHLEVW 207
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G + + + F FG TGKSK YGF+ F Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++G + + + F FG TGKSK YGF+ F Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145
>PLCB2_HUMAN (Q00722) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 2 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-2) (PLC-beta-2) Length = 1181 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +3 Query: 111 ACEMGLRDKKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPE 266 AC++G R +R + SAG G+G EG + R+RE K E E Sbjct: 940 ACKLGPGKGSRKKRSLPREESAGAAPGEGP-----EGVDGRVRELKDRLELE 986
>YPC4_CAEEL (Q11181) Hypothetical protein C05D10.4| Length = 597 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -1 Query: 274 AVFSGSSACFFSRILCSFPSSGRKSLPSPVLGPAERR 164 AV SSACF S SFPS G + P+ G + R Sbjct: 79 AVNRSSSACFHSPHRPSFPSRGLQKYDYPICGVSPSR 115
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/53 (22%), Positives = 23/53 (43%) Frame = +3 Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 E++ T L + ++P ++ + F G TG+S YGF+ + Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/47 (29%), Positives = 19/47 (40%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 LY+ +P + M F Q+G TG S+ GFI F Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/53 (22%), Positives = 22/53 (41%) Frame = +3 Query: 264 ENTATVLYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIEF 422 +++ T L + ++P +D F G TG+S YGF+ + Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
>SNX11_MOUSE (Q91WL6) Sorting nexin-11| Length = 271 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 229 CSFPSSGRKSLPSPVLGPAERRESTRLW 146 C P SGR+S PSP L +E +E W Sbjct: 182 CFLPRSGRRSSPSPPL--SEEKEQLETW 207
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +3 Query: 213 LEGKEQRIREKKQAEEPENTATV-LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXT 389 L G +Q + + AE+P + + L++G++P ++ F++ G T Sbjct: 65 LSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLT 124 Query: 390 GKSKHYGFI 416 G+S+ +GF+ Sbjct: 125 GRSRGFGFV 133
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 14/84 (16%) Frame = +3 Query: 213 LEGKEQRIREKKQAEEPENTA--------------TVLYIGHVPHGFYEDHMSCFFQQFG 350 L+G+ R+ E+ EN++ +Y+G++ G +D + F + G Sbjct: 153 LDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQG 212 Query: 351 XXXXXXXXXXXXTGKSKHYGFIEF 422 +G+S+ +GF+ + Sbjct: 213 KVVDAKVVYDRDSGRSRGFGFVTY 236
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 17/86 (19%) Frame = +3 Query: 216 EGKEQRIREKKQAEEPENTATVLYIGHVPHGFY-----------------EDHMSCFFQQ 344 E E +++ +K+ E T+ IG +P ++ + F + Sbjct: 207 ETSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSR 266 Query: 345 FGXXXXXXXXXXXXTGKSKHYGFIEF 422 FG TG S Y FIEF Sbjct: 267 FGKIISCQVIRDKETGDSLQYAFIEF 292
>IE68_SHV21 (Q01042) Immediate-early protein| Length = 407 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 135 KKRNQRRVLSRRSAGPKTGDGKDFLPLEGKEQRIREKKQAEEPENTA 275 ++R +R R G + G+G++ E E++ E+++AEE E A Sbjct: 72 EERERRGEEEREGEGGEEGEGREEAEEEEAEEKEAEEEEAEEAEEEA 118
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/46 (21%), Positives = 23/46 (50%) Frame = +3 Query: 282 LYIGHVPHGFYEDHMSCFFQQFGXXXXXXXXXXXXTGKSKHYGFIE 419 +Y+G++ + E ++ F ++G TG+ + +GF+E Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVE 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,728,022 Number of Sequences: 219361 Number of extensions: 706297 Number of successful extensions: 2804 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 2676 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2799 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
